mRNA_M-pyrifera_M_contig73854.17499.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73854.17499.1
Unique NamemRNA_M-pyrifera_M_contig73854.17499.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73854.17499.1 vs. uniprot
Match: A0A836C5B8_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C5B8_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 1.810e-12
Identity = 61/184 (33.15%), Postives = 90/184 (48.91%), Query Frame = 1 
Query:  421 ATRFTVVVCMDVSGSMEGQPWEDSVNAFNTFVKTRRAAIERSGHPNEDLVGVVVYHSVGSTAIPISPLAGDISLSATCGGGTNFAAGINASMQMFRAAGPYDDDNVPVFIFMSDG----GSSSGDVEMRSLAAELGPSARVHVQGFGSGADTNRLTNLA--AHGNGTYRSAADGVEFESSMRDI 954
            ATRF +V C+D SGSM GQ W+D + A+   +  RR     +    EDLV V+ ++   ++   ++P+A   S     GGGT FA  ++   Q   A      D  P+ IFMSDG    GS+   V  + + +  G +  VH  GF +G+    L  LA  A G G + S   GV+  ++   I
Sbjct: 8274 ATRFHLVFCLDASGSMSGQKWQDVMTAYGQLLARRR-----NDQGLEDLVTVITFNDSVTSHYELTPIALAPSSVGYTGGGTCFAPPLH---QAAAAMARQPHDASPLLIFMSDGQNQDGSAPVSVMDQIVGSYQGRNLMVHTIGFQAGSGEAMLQQLAGRAGGAGRFHSCPSGVDLSAAFVSI 8449
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BLAST of mRNA_M-pyrifera_M_contig73854.17499.1 vs. uniprot
Match: A0A5M6D0F1_9BACT (VWA domain-containing protein n=2 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6D0F1_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 6.050e-7
Identity = 56/182 (30.77%), Postives = 86/182 (47.25%), Query Frame = 1 
Query:  436 VVVCMDVSGSMEGQPWEDSVNAFNTFVKTRRAAIERSGHPNEDLVGVVVYHSVGSTAIPISPLAGDI--SLSAT-CGGGTNFAAGINASMQMFRAAGPYDDDNVP-VFIFMSDGGSSSGDVEMRSLAAELGPSA-RVHVQGFGSGADTNRLTNLAAHGNGTYRSAADGVEFESSMRDIGTSL 966
            VV+ +D SGSMEG  + D  +A + FV T          P E+ VG+  Y+   S  +P++    +I   L+A   GG T+ + G++A   +       D   V    I M+DG  + G  E  ++A  L     ++H   FGSGAD  R+  +A  G G +  A    E  ++ R+I  SL
Sbjct:  149 VVLVVDRSGSMEGDKFADLQSAISVFVNTL------GDTPVEEAVGLASYNDTASEDVPLTLDLNEIVDGLAALRVGGRTSISRGMSAGASLMENG--RDASFVERTMIVMTDGLHNEGP-EPSTVATTLAAGGVQLHTITFGSGADQERMREIARIGRGRHYHALTATELRNAYREIALSL 321
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BLAST of mRNA_M-pyrifera_M_contig73854.17499.1 vs. uniprot
Match: M5RQA9_9BACT (von Willebrand factor type A n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5RQA9_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.230e-6
Identity = 58/188 (30.85%), Postives = 85/188 (45.21%), Query Frame = 1 
Query:  436 VVVCMDVSGSMEGQPWEDSVNAFNTFVKTRRAAIERSGHPNEDLVGVVVYHSVGSTAIPISPLAGDISL------SATCGGGTNFAAGINASMQMFRAAGPYDDDNVP-VFIFMSDGGSSSGDVEMRSLAAELGPSA-RVHVQGFGSGADTNRLTNLAAHGNGTYRSAADGVEFESSMRDIGTSLEPM 975
            VV+ +D SGSM G    D  +A N F  T        G P ++ VG+  Y+      + +S    D++L      +   GG T+ + G++A   +   +   D   V    I M+DG  + G  E R  A E+      +H   FG+GADT R+  +AA GNG    AA G E     R+I  +L  M
Sbjct:   27 VVLVVDRSGSMSGAKIADLRDAINIFTSTLE------GTPVQEQVGLASYNDRAREDVQLSD---DLNLITRAMAAMPVGGFTSISRGMDAGHSIMNRS--RDAKFVEKTMIVMTDGKHNRGR-EPRESADEIARDGITIHTITFGAGADTTRMREVAAIGNGKTFHAASGDELRRIYREIALTLSTM 202
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BLAST of mRNA_M-pyrifera_M_contig73854.17499.1 vs. uniprot
Match: A0A7K0XJR1_9ACTN (VWA domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7K0XJR1_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 3.610e-5
Identity = 60/202 (29.70%), Postives = 92/202 (45.54%), Query Frame = 1 
Query:  394 LTAAQAGGFATR--FTVVVCMDVSGSMEGQPWEDSVNAFNTFVKTRRAAIERSGHPNEDLVGVVVYHSVGSTAIPISPL----AGDIS---LSATCGGGTNFAAGINASM-QMFRAAGPYDDDNVPVFIFMSDGGSSSGDVEMRSLA-----AELGPSARVHVQGFGSGADTNRLTNLAAHGNGTYRSAADGVEFESSMRDI 954
            LTA      A+R    +V+ +D SGSM G+P E S  A  T    RR A        +D++GVV + + G   +P + +    AG++    +    GG T+ +AG    + +  RA          V + +SDG  ++G  +   LA     A+ G S      GFG G D   L  +   GNGT+R A D    +++ R+I
Sbjct:   26 LTAPMPDEIASRPGQALVIVLDRSGSMAGEPLEASKRAIATLA--RRLA-------PQDVLGVVTFDNQGDVVVPATRMRDLNAGELDARIMGIRAGGSTDLSAGYLLGLREAGRATAALGSVGATVLV-VSDGHVNAGIADPVILAGLAQRAQAGDSVTTSTVGFGLGYDEVLLEAITRGGNGTHRFAPD---VDAATREI 214
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BLAST of mRNA_M-pyrifera_M_contig73854.17499.1 vs. uniprot
Match: A0A7S0R064_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R064_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 6.060e-5
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    1 DFVCFDVEVNRNGGVRVILTFVPDSVEEFIQFKGRTARRGEEGDFRQIFLRSD----VTAKLEL---SDDDLTAAVAANNLQD 228
            D+   D  V  NGG+ +++ +VPDS  E+IQF GRTAR+ + G F  + L+SD    +TA  E    S DD T  V  N LQD
Sbjct:   32 DYRVQDDAVEINGGLMLVIGYVPDSEREYIQFLGRTARQDKRGQFCAVLLKSDYDSALTAGAEAVGASGDDQTGVVR-NILQD 113
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BLAST of mRNA_M-pyrifera_M_contig73854.17499.1 vs. uniprot
Match: A0A2T3FBI3_9FIRM (VWFA domain-containing protein n=7 Tax=Enterocloster TaxID=2719313 RepID=A0A2T3FBI3_9FIRM)

HSP 1 Score: 55.5 bits (132), Expect = 9.530e-5
Identity = 50/169 (29.59%), Postives = 79/169 (46.75%), Query Frame = 1 
Query:  436 VVVCMDVSGSMEGQPWEDSVNAFNTFVKTRRAAIERSGHPNEDLVGVVVYHSV--GSTAIPISP-LAGDISLSATCGGGTNFAAGINASMQMFRAAGPYDDDNVPVFIFMSDG----GSSSGDVEMRSLAAELGPSARVHVQGFGSGADTNRLTNLAAHGNGTYRSAAD 921
            +++C DVSGSM+G+P EDS  A  +  ++       SG+     +GV++++S   G T   + P +    + S T  GGTN    +   ++ F   GP   + +   + MSDG      S+ +++     A    S  VH  G GS  D N L  +A    GTY+   D
Sbjct:  551 MLLCCDVSGSMQGRPIEDSRAAVISMAESM------SGNAR---LGVILFNSSVQGLTDFTVQPDVIRSTAESMTANGGTNIFDTVVHGLESFPKNGP---EVLNTLVVMSDGQENNSHSAEEIQTAIGQAAKDKSILVHCLGLGSEVDANYLQTIAQSTGGTYQYVTD 707
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73854.17499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836C5B8_9CHLO1.810e-1233.15Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A5M6D0F1_9BACT6.050e-730.77VWA domain-containing protein n=2 Tax=Roseiconus n... [more]
M5RQA9_9BACT1.230e-630.85von Willebrand factor type A n=2 Tax=Rhodopirellul... [more]
A0A7K0XJR1_9ACTN3.610e-529.70VWA domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S0R064_9CHLO6.060e-543.37Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A2T3FBI3_9FIRM9.530e-529.59VWFA domain-containing protein n=7 Tax=Enteroclost... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73854contigM-pyrifera_M_contig73854:1..984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog227086.JGI_V11_56151
KEGG koko:K20478
Hectar predicted targeting categoryother localisation
EggNOG OGs2CXTS@1,2RZNF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size984
Cds size984
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.45387-CDS-M-pyrifera_M_contig73854:0..9841622816636.45387-CDS-M-pyrifera_M_contig73854:0..984Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73854 1..984 +
1692278090.8885953-CDS-M-pyrifera_M_contig73854:0..9841692278090.8885953-CDS-M-pyrifera_M_contig73854:0..984Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73854 1..984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73854.17499.1prot_M-pyrifera_M_contig73854.17499.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73854 1..984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73854.17499.1

>prot_M-pyrifera_M_contig73854.17499.1 ID=prot_M-pyrifera_M_contig73854.17499.1|Name=mRNA_M-pyrifera_M_contig73854.17499.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=328bp
DFVCFDVEVNRNGGVRVILTFVPDSVEEFIQFKGRTARRGEEGDFRQIFL
RSDVTAKLELSDDDLTAAVAANNLQDVISAKRDVIRADVLARNLQRSKDL
QNDHRRGEEFLADMANYQAENRKAMLQYMKLLTAAQAGGFATRFTVVVCM
DVSGSMEGQPWEDSVNAFNTFVKTRRAAIERSGHPNEDLVGVVVYHSVGS
TAIPISPLAGDISLSATCGGGTNFAAGINASMQMFRAAGPYDDDNVPVFI
FMSDGGSSSGDVEMRSLAAELGPSARVHVQGFGSGADTNRLTNLAAHGNG
TYRSAADGVEFESSMRDIGTSLEPMHL*
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mRNA from alignment at M-pyrifera_M_contig73854:1..984+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73854.17499.1 ID=mRNA_M-pyrifera_M_contig73854.17499.1|Name=mRNA_M-pyrifera_M_contig73854.17499.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig73854:1..984+ (Macrocystis pyrifera P11B4 male)
GACTTTGTCTGCTTCGATGTTGAGGTGAACCGCAACGGTGGAGTCCGTGT
CATCCTCACGTTCGTACCTGACTCGGTGGAGGAGTTCATCCAGTTCAAGG
GCAGGACGGCAAGGAGAGGTGAGGAGGGTGACTTCCGTCAGATTTTCCTC
CGCTCCGACGTCACCGCCAAGCTGGAGCTCTCCGACGATGACCTCACTGC
CGCAGTCGCAGCCAACAACCTGCAGGACGTCATCTCTGCCAAGCGCGATG
TCATCCGTGCCGACGTCCTCGCACGTAACCTCCAGCGATCGAAGGATCTC
CAGAATGACCACAGGCGGGGAGAGGAGTTCCTGGCAGATATGGCCAACTA
CCAGGCAGAGAACAGGAAGGCCATGCTGCAGTACATGAAGCTGCTCACTG
CCGCCCAGGCAGGCGGCTTCGCCACTCGCTTCACCGTCGTCGTCTGCATG
GACGTCTCCGGCTCGATGGAGGGCCAGCCCTGGGAGGACTCTGTCAATGC
CTTCAATACCTTCGTCAAGACCAGGAGGGCAGCCATTGAGCGCTCTGGCC
ACCCCAACGAGGACCTCGTGGGCGTTGTGGTGTACCACTCGGTGGGCTCC
ACTGCCATTCCCATCAGCCCCTTGGCAGGAGACATCAGTCTTTCAGCCAC
TTGCGGTGGTGGCACCAACTTTGCGGCAGGCATCAATGCCAGCATGCAGA
TGTTCCGAGCTGCCGGACCCTACGACGACGACAACGTGCCGGTCTTCATT
TTCATGTCTGACGGTGGCTCTTCTTCGGGAGACGTGGAGATGCGATCTCT
GGCCGCAGAGCTCGGCCCTTCTGCCCGCGTTCATGTCCAAGGATTTGGTT
CTGGTGCTGACACAAACCGACTGACAAACCTGGCTGCGCATGGCAACGGT
ACGTACCGCAGTGCCGCCGATGGCGTAGAATTCGAGTCGTCCATGCGCGA
CATTGGCACCAGCTTGGAGCCGATGCACCTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73854:1..984+

>mRNA_M-pyrifera_M_contig73854.17499.1 ID=mRNA_M-pyrifera_M_contig73854.17499.1|Name=mRNA_M-pyrifera_M_contig73854.17499.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1968bp|location=Sequence derived from alignment at M-pyrifera_M_contig73854:1..984+ (Macrocystis pyrifera P11B4 male)
GACTTTGTCTGCTTCGATGTTGAGGTGAACCGCAACGGTGGAGTCCGTGT
CATCCTCACGTTCGTACCTGACTCGGTGGAGGAGTTCATCCAGTTCAAGG
GCAGGACGGCAAGGAGAGGTGAGGAGGGTGACTTCCGTCAGATTTTCCTC
CGCTCCGACGTCACCGCCAAGCTGGAGCTCTCCGACGATGACCTCACTGC
CGCAGTCGCAGCCAACAACCTGCAGGACGTCATCTCTGCCAAGCGCGATG
TCATCCGTGCCGACGTCCTCGCACGTAACCTCCAGCGATCGAAGGATCTC
CAGAATGACCACAGGCGGGGAGAGGAGTTCCTGGCAGATATGGCCAACTA
CCAGGCAGAGAACAGGAAGGCCATGCTGCAGTACATGAAGCTGCTCACTG
CCGCCCAGGCAGGCGGCTTCGCCACTCGCTTCACCGTCGTCGTCTGCATG
GACGTCTCCGGCTCGATGGAGGGCCAGCCCTGGGAGGACTCTGTCAATGC
CTTCAATACCTTCGTCAAGACCAGGAGGGCAGCCATTGAGCGCTCTGGCC
ACCCCAACGAGGACCTCGTGGGCGTTGTGGTGTACCACTCGGTGGGCTCC
ACTGCCATTCCCATCAGCCCCTTGGCAGGAGACATCAGTCTTTCAGCCAC
TTGCGGTGGTGGCACCAACTTTGCGGCAGGCATCAATGCCAGCATGCAGA
TGTTCCGAGCTGCCGGACCCTACGACGACGACAACGTGCCGGTCTTCATT
TTCATGTCTGACGGTGGCTCTTCTTCGGGAGACGTGGAGATGCGATCTCT
GGCCGCAGAGCTCGGCCCTTCTGCCCGCGTTCATGTCCAAGGATTTGGTT
CTGGTGCTGACACAAACCGACTGACAAACCTGGCTGCGCATGGCAACGGT
ACGTACCGCAGTGCCGCCGATGGCGTAGAATTCGAGTCGTCCATGCGCGA
CATTGGCACCAGCTTGGAGCCGATGCACCTCTAGGACTTTGTCTGCTTCG
ATGTTGAGGTGAACCGCAACGGTGGAGTCCGTGTCATCCTCACGTTCGTA
CCTGACTCGGTGGAGGAGTTCATCCAGTTCAAGGGCAGGACGGCAAGGAG
AGGTGAGGAGGGTGACTTCCGTCAGATTTTCCTCCGCTCCGACGTCACCG
CCAAGCTGGAGCTCTCCGACGATGACCTCACTGCCGCAGTCGCAGCCAAC
AACCTGCAGGACGTCATCTCTGCCAAGCGCGATGTCATCCGTGCCGACGT
CCTCGCACGTAACCTCCAGCGATCGAAGGATCTCCAGAATGACCACAGGC
GGGGAGAGGAGTTCCTGGCAGATATGGCCAACTACCAGGCAGAGAACAGG
AAGGCCATGCTGCAGTACATGAAGCTGCTCACTGCCGCCCAGGCAGGCGG
CTTCGCCACTCGCTTCACCGTCGTCGTCTGCATGGACGTCTCCGGCTCGA
TGGAGGGCCAGCCCTGGGAGGACTCTGTCAATGCCTTCAATACCTTCGTC
AAGACCAGGAGGGCAGCCATTGAGCGCTCTGGCCACCCCAACGAGGACCT
CGTGGGCGTTGTGGTGTACCACTCGGTGGGCTCCACTGCCATTCCCATCA
GCCCCTTGGCAGGAGACATCAGTCTTTCAGCCACTTGCGGTGGTGGCACC
AACTTTGCGGCAGGCATCAATGCCAGCATGCAGATGTTCCGAGCTGCCGG
ACCCTACGACGACGACAACGTGCCGGTCTTCATTTTCATGTCTGACGGTG
GCTCTTCTTCGGGAGACGTGGAGATGCGATCTCTGGCCGCAGAGCTCGGC
CCTTCTGCCCGCGTTCATGTCCAAGGATTTGGTTCTGGTGCTGACACAAA
CCGACTGACAAACCTGGCTGCGCATGGCAACGGTACGTACCGCAGTGCCG
CCGATGGCGTAGAATTCGAGTCGTCCATGCGCGACATTGGCACCAGCTTG
GAGCCGATGCACCTCTAG
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