mRNA_M-pyrifera_M_contig738.17489.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig738.17489.1
Unique NamemRNA_M-pyrifera_M_contig738.17489.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig738.17489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig738contigM-pyrifera_M_contig738:23318..26802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size640
Cds size621
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig738.17489.1prot_M-pyrifera_M_contig738.17489.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig738 23335..26802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.7157567-UTR-M-pyrifera_M_contig738:23317..233341622816635.7157567-UTR-M-pyrifera_M_contig738:23317..23334Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig738 23318..23334 +
1692278090.381904-UTR-M-pyrifera_M_contig738:23317..233341692278090.381904-UTR-M-pyrifera_M_contig738:23317..23334Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig738 23318..23334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.730124-CDS-M-pyrifera_M_contig738:23334..234711622816635.730124-CDS-M-pyrifera_M_contig738:23334..23471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig738 23335..23471 +
1692278090.3917975-CDS-M-pyrifera_M_contig738:23334..234711692278090.3917975-CDS-M-pyrifera_M_contig738:23334..23471Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig738 23335..23471 +
1622816635.7435598-CDS-M-pyrifera_M_contig738:26290..266021622816635.7435598-CDS-M-pyrifera_M_contig738:26290..26602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig738 26291..26602 +
1692278090.4026017-CDS-M-pyrifera_M_contig738:26290..266021692278090.4026017-CDS-M-pyrifera_M_contig738:26290..26602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig738 26291..26602 +
1622816635.756171-CDS-M-pyrifera_M_contig738:26630..268021622816635.756171-CDS-M-pyrifera_M_contig738:26630..26802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig738 26631..26802 +
1692278090.4138143-CDS-M-pyrifera_M_contig738:26630..268021692278090.4138143-CDS-M-pyrifera_M_contig738:26630..26802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig738 26631..26802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig738.17489.1

>prot_M-pyrifera_M_contig738.17489.1 ID=prot_M-pyrifera_M_contig738.17489.1|Name=mRNA_M-pyrifera_M_contig738.17489.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=207bp
MVNVRSKHCEQETCKTRPIFAFPGSPKGVFCVEHAEPGMVDVINKRCAEV
GGCSKQPSYGHESDRRATFCAKHALAGVVNIVSIRCLHGCDKHAAYGTPG
SKKRQYFLEHSEGGMVHVDQARPPHKPRRRVAHRKQGGNAVTEGAACVRY
SSSSSSRAMITRLSMRMFGLLLLVRSGGRVGGVSPLATRAARWGVRKELP
VERNCAR
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mRNA from alignment at M-pyrifera_M_contig738:23318..26802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig738.17489.1 ID=mRNA_M-pyrifera_M_contig738.17489.1|Name=mRNA_M-pyrifera_M_contig738.17489.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3485bp|location=Sequence derived from alignment at M-pyrifera_M_contig738:23318..26802+ (Macrocystis pyrifera P11B4 male)
CGCACGCCGACGAGGGCATGGTTAACGTGCGGAGCAAGCACTGCGAACAG
GAGACGTGCAAAACGCGACCCATTTTCGCGTTCCCGGGTTCTCCAAAAGG
CGTTTTCTGCGTGGAGCACGCGGAACCGGGGATGGTCGACGTGATCAACA
AGAGGTAAGAGTCGTGATGCCATGGTACATGCCGCAGGTCCACATTTTGT
TGTTGTACCTTTTGAGGTACCTTTTATTGTCTTGCTTGGAGCCAAGCATT
TTCTTCAGTTGTATGTGCTTTGCCCTGTTTTATTTTTTTCCCTGAGGTGT
TTTTTCCACTCTCCAGAGCTATTGCAGCGGTGCACACATCGGCCACGGAC
TACGTTTGTTGGCCTAGAGTCCATGTGAGAATACCAACAAGTCGGTGAAG
TACTATGTGAGAACAACAGGGATTAGGTAGAACGTATGAGAAGAATAACG
ATGAGCCAATGTGATAGCATCAACAATGATGAGTTCGTGTGTGGTAGCAA
CATGAAAGATGAGGCAATGTAGCAGCAGCAACAGTGATAAGGTAAAGGCG
AGTAGCAACAGCTGTAGGGATGTAAGGTACAGTGTGCTAACAACAACAAG
GTTGAGCTAATAGGGTGTTTTTGCGATAATCCAATTTGGTTGGGTTATAG
TAATATTCGAAACAAAAGCATTCGAAACAACAAACATGAGGCGATGGTTG
GCTGAACAGGCGAATCCGAAGGCCCTAGCCAGTCAGAAGTTTCTCCGTTT
GCGAACCAACCCACTGAGTTTACCCAGCCCGAGAACACTCGTGTTAAAAG
CGTCGCTCTGGTCACTTTTTCCCACAGCCTTGACGACGATACTAACTTTT
CGTGGGTTGGGGCATCTATCGGAAAGGAAACAGACTGCACCAAAAGCTCG
AACGAATTGGTGCCACCCAAGCACGTTGCCGACACCAAAACGTTAGCACA
AGAACAAGAAGAACAACAACTATTAATAACAACAACAACAACAACAACAA
CAACACGTTTCACTGTAGGTTAGTGGCCGATCGTCGTCCTTGCTTCTGCG
GTTGCGTTGGGGCTCGAATCTCGATTGGTTGAGCGAATGCCACGACAGCG
CGGCACTAGGAGTGCACGAGCACGAAAGAGAAAACGGAGCCGCTCTCGCC
ACCATGTCAGAATTGAAGACAAACTACGTGCTGCCGCTGGTTGGAATTTT
TGTCAGAAGTTGAATACAAAAATGGGTTTTTTTTCAAAGTCTTGTTTTAC
TTGACTTAATAATACTCCCCGCTGTCTTAGAATCGAAACACAAAAGTGGG
GTGTCGAGTTTTTTGTTTTTGTTTGTTTGTTTCGTGTACCCTTGAGGTGC
ACCTACTTTTTTCTGGGGCTCCTGACTTGATTGTAATACACCTGGCATGA
GCTCTACTGTACGCTTCACCCAGAAACTGACTTCGAGACGGTACGAAACT
GCAATCCGATTATTACGGGAGGCCATAGTAAATATGACCAAATATTGTTA
GTAGAAATAGGTAAATATATAGGTGTTTATTTATACCATAGGTCCTATTA
ACTATGGACCTCCGTAATACTTAGAACAATCTAGTGGTGTTTCGTCGATA
TTGGGTAGTTTCTCGGTTGACCATGAATAGATAAGCGAGGGAGATCTAAG
GCTCATTCTTATCGGAGAGGTTTTTTTCCAGAATTTCCAAAGTTTGGAAA
AAAATGGAGCTATGTATCAAGATACGGACGCGTTCTGTCACTATTCGTGA
AATTCTCCAGAAGCGAAAAAATCGTGTTGGTTTAAATTTCACACATCTCG
GGAAAACAATCAGTCACACATTTCGGGAAAACAATCAGGAAAATCTTGGA
AGATGAAAAAAAATTGCGCGAAACGAACATGGAAATTATCGGAAAGAACG
CTCTCCGATAAGAGTGACCCTAAGTAAGAGCCTTCAAGAAGGAAAAGTGG
GATATTTTGTGATGAACAAAATAAATTGCTACGAAGGCCTTGGGACTTCA
GAAGTGGGAAATGTAGCGATAGTAAAGTGACGATTGCAGCAACTTTGTGG
CCAACAAGCGATTGGGGGATGATACGGCACAATAATATTGGTGTCCGAGT
TACAATGGTCGATGCAAGGAGTCGCACGGAACGGGCGGACCATGACCCTA
ATAACCGTACTGCTGAGCGGTCACGCCTAAATGGTTGATTGATATCACCA
GAGTTGTCATCGTCTTAGTCGCTCTCTTCAACACCCAAAGGAGTTGAGAG
GATAGTCGATTCAAGCCGGACGTGCCGCAGCAGGTACGATATTTTATGGG
AGGGATAAAATTAGAGAGTTGTAGAGCACAAACGAGATTGGAAGATATTA
GGCCCGATAGTACCCCCCCCCTCTCCCTGATAGTGGTGATGATGATGGTG
ATGACAATGGTGGTGGTGATCGTGCTGATGATGGTGATAAGGATGCTGAT
AATGACGACGATGATTGCCATGATGGGGATGATGATGCTAATGGTGACGA
TGGTGCTCCCACTCACTCGCTTGCCTGATATCCAGCCTGTGGTAAAACGA
AACAGGCGAAAGCCAAAAAAGCTAATTCCTACGTACGGTGGCATGGCTCG
CCAGTATTCAAAATAAAATTGGGCCCAAATATGGCCGCTCCGACGCACTC
ACACCACCCCCACCCACAAACCCACGACTCGGGCACGACGACCAGCAACT
CTCCTCCTCCCCCACCACCNNNNNNNNNNAACAGGAGGGGATAGCGGTGG
TGGGCGGTGTGCGGGCGGGTTGCCCTCCCCCCCCCCCTATTCAAAAAAAA
AATGGGCCCCAATACCCCCCCCCCCCCCCCCCCCCCCCATATAGTCAGCA
GTCAGGAGCATGCTTGGCCTAAACGTACCCCTCCCCCCGCACTACCGCAG
CATGCATCACCGTCGGAATTTTGTATGACCCAAGCGCCACTTTCCTCCCC
CCCGCTACGACGCCTTGGGCCAGGTGCGCTGAGGTGGGAGGCTGCTCGAA
ACAGCCTTCGTACGGCCACGAGAGCGACAGGAGGGCTACCTTCTGCGCGA
AGCACGCCTTGGCGGGTGTGGTGAACATCGTCAGTATCAGGTGCCTTCAC
GGCTGTGACAAGCACGCGGCGTACGGCACCCCGGGGAGCAAGAAACGGCA
GTACTTCTTGGAGCACTCCGAGGGAGGGATGGTTCACGTTGATCAGGCGA
GGCCACCCCACAAGCCCCGGCGGCGTGTCGCGCATCGGAAGCAAGGTGGT
AACGCGGTTACGGAGGGCGCTGCTTGTGTCCGGTAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGCGATGATAACGCGG
CTATCGATGAGGATGTTCGGGTTGCTGTTGCTGGTGAGAAGCGGCGGCAG
AGTGGGGGGAGTGAGCCCTCTGGCGACACGAGCAGCCCGTTGGGGGGTGC
GGAAGGAACTGCCGGTGGAAAGAAATTGTGCGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig738:23318..26802+

>mRNA_M-pyrifera_M_contig738.17489.1 ID=mRNA_M-pyrifera_M_contig738.17489.1|Name=mRNA_M-pyrifera_M_contig738.17489.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1242bp|location=Sequence derived from alignment at M-pyrifera_M_contig738:23318..26802+ (Macrocystis pyrifera P11B4 male)
ATGGTTAACGTGCGGAGCAAGCACTGCGAACAGGAGACGTGCAAAACGCG
ACCCATTTTCGCGTTCCCGGGTTCTCCAAAAGGCGTTTTCTGCGTGGAGC
ACGCGGAACCGGGGATGGTCGACGTGATCAACAAGAGATGGTTAACGTGC
GGAGCAAGCACTGCGAACAGGAGACGTGCAAAACGCGACCCATTTTCGCG
TTCCCGGGTTCTCCAAAAGGCGTTTTCTGCGTGGAGCACGCGGAACCGGG
GATGGTCGACGTGATCAACAAGAGGTGCGCTGAGGTGGGAGGCTGCTCGA
AACAGCCTTCGTACGGCCACGAGAGCGACAGGAGGGCTACCTTCTGCGCG
AAGCACGCCTTGGCGGGTGTGGTGAACATCGTCAGTATCAGGTGCCTTCA
CGGCTGTGACAAGCACGCGGCGTACGGCACCCCGGGGAGCAAGAAACGGC
AGTACTTCTTGGAGCACTCCGAGGGAGGGATGGTTCACGTTGATCAGGCG
AGGCCACCCCACAAGCCCCGGCGGCGTGTCGCGCATCGGAAGCAAGGTGG
TAACGCGGTTACGGAGGGCGCTGCTTGTGTCCGGTAGTGCGCTGAGGTGG
GAGGCTGCTCGAAACAGCCTTCGTACGGCCACGAGAGCGACAGGAGGGCT
ACCTTCTGCGCGAAGCACGCCTTGGCGGGTGTGGTGAACATCGTCAGTAT
CAGGTGCCTTCACGGCTGTGACAAGCACGCGGCGTACGGCACCCCGGGGA
GCAAGAAACGGCAGTACTTCTTGGAGCACTCCGAGGGAGGGATGGTTCAC
GTTGATCAGGCGAGGCCACCCCACAAGCCCCGGCGGCGTGTCGCGCATCG
GAAGCAAGGTGGTAACGCGGTTACGGAGGGCGCTGCTTGTGTCCGGTACA
GCAGCAGCAGCAGCAGCAGGGCGATGATAACGCGGCTATCGATGAGGATG
TTCGGGTTGCTGTTGCTGGTGAGAAGCGGCGGCAGAGTGGGGGGAGTGAG
CCCTCTGGCGACACGAGCAGCCCGTTGGGGGGTGCGGAAGGAACTGCCGG
TGGAAAGAAATTGTGCGAGGCAGCAGCAGCAGCAGCAGCAGGGCGATGAT
AACGCGGCTATCGATGAGGATGTTCGGGTTGCTGTTGCTGGTGAGAAGCG
GCGGCAGAGTGGGGGGAGTGAGCCCTCTGGCGACACGAGCAGCCCGTTGG
GGGGTGCGGAAGGAACTGCCGGTGGAAAGAAATTGTGCGAGG
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