mRNA_M-pyrifera_M_contig73623.17446.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73623.17446.1
Unique NamemRNA_M-pyrifera_M_contig73623.17446.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Match: A0A7S2F5N5_9STRA (F-actin-capping protein subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5N5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.780e-20
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 MAGEGDESQLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQPLLVATCAKTGKTFLKCDYNRDGDSFR 228
            MA  G E  ++ +L++++RMPP++I  NL+ L  L P+  D+LL++VDQPL  ATC +TG+ FL CDYNRDGDS+R
Sbjct:    1 MASAGAEDPIIASLSIMRRMPPNKIEQNLSGLLNLIPDQTDELLQRVDQPLQEATCGQTGRPFLLCDYNRDGDSYR 76
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BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Match: D2VJJ6_NAEGR (F-actin-capping protein subunit beta n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VJJ6_NAEGR)

HSP 1 Score: 86.7 bits (213), Expect = 7.290e-19
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:   16 DESQLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQPLLVATCAKTGKTFLKCDYNRDGDSFR 228
            ++SQL  AL+L +R+PP+++  NL+ +T LAP   DDLL+ VD PL +  CA+TGK +L CDYNRDGDS+R
Sbjct:    4 EDSQLNSALDLFRRLPPAQLETNLSFVTELAPHLTDDLLQTVDCPLKIRKCAETGKDYLVCDYNRDGDSYR 74
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BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Match: A0A139AMB6_GONPJ (F-actin-capping protein subunit beta n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AMB6_GONPJ)

HSP 1 Score: 86.7 bits (213), Expect = 1.390e-18
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:   16 DESQLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQPLLVATCAKTGKTFLKCDYNRDGDSFR 228
            D+S L  AL+L++R+PP+ +  NLA L  LAP   ++LL  VDQPL V  C KTGK +L CDYNRDGDS+R
Sbjct:   48 DQSDLDSALDLMRRLPPNRVEENLANLIELAPHLTEELLSAVDQPLKVQKCKKTGKEYLLCDYNRDGDSYR 118
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BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Match: F0YCA6_AURAN (F-actin-capping protein subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCA6_AURAN)

HSP 1 Score: 85.5 bits (210), Expect = 2.250e-18
Identity = 38/74 (51.35%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    7 GEGDESQLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQPLLVATCAKTGKTFLKCDYNRDGDSFR 228
            G+  +  +  AL++++RMPP++I  NL+ L  L PE  D+LL++VDQPL  ATCA++G+ +L CDYNRDGDS+R
Sbjct:    2 GDAKKDPISCALSIMRRMPPNKIEHNLSGLLNLVPEHTDELLQRVDQPLEEATCAESGRKYLLCDYNRDGDSYR 75
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BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Match: A0A1S8VHQ7_9FUNG (F-actin-capping protein subunit beta n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VHQ7_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 2.600e-18
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:   25 QLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQPLLVATCAKTGKTFLKCDYNRDGDSFR 228
            QL  AL+L++R PPS+   NLAKL  L P+  +DLL  VDQPL +  C+KTGK FL CDYNRDGDS R
Sbjct:    4 QLDCALDLMRRQPPSKTTQNLAKLLLLVPDLTEDLLSSVDQPLKIEQCSKTGKDFLLCDYNRDGDSHR 71
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BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Match: A0A4P9XTA7_9FUNG (F-actin-capping protein subunit beta n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XTA7_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 2.800e-18
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   25 QLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQPLLVATCAKTGKTFLKCDYNRDGDSFR 228
            QL +A++L++R+PP     NLA L  LAP   +DLL+ VDQPL V  C KTG+ +L+CDYNRDGDS+R
Sbjct:    4 QLEYAVDLMRRLPPQNTEDNLAALIDLAPHLAEDLLQSVDQPLRVERCRKTGREYLRCDYNRDGDSYR 71
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BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Match: F4NVU3_BATDJ (F-actin-capping protein subunit beta n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NVU3_BATDJ)

HSP 1 Score: 83.6 bits (205), Expect = 1.000e-17
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   25 QLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQPLLVATCAKTGKTFLKCDYNRDGDSFR 228
            QL  AL+L++R PPS+   NLAKL  L P+  +DLL  VDQPL V  C +TGK FL CDYNRDGDS R
Sbjct:    4 QLDCALDLMRRQPPSKTTQNLAKLIQLVPDLTEDLLTSVDQPLKVEKCVRTGKDFLLCDYNRDGDSHR 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Match: UPI001E1DBC4C (F-actin-capping protein subunit beta-like isoform X2 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DBC4C)

HSP 1 Score: 82.4 bits (202), Expect = 1.090e-17
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   19 ESQLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQPLLVATCAKTGKTFLKCDYNRDGDSFR 228
            + QL  AL+L++R+PP +I  NL+ L  L P   +DLL  VDQPL +A C  TGK FL CDYNRDGDS+R
Sbjct:    3 DQQLDCALDLMRRLPPQQIEKNLSDLIDLVPNLCEDLLSSVDQPLKIARCKTTGKDFLLCDYNRDGDSYR 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Match: A0A0D1ZDK7_EXOME (F-actin-capping protein subunit beta n=2 Tax=Exophiala mesophila TaxID=212818 RepID=A0A0D1ZDK7_EXOME)

HSP 1 Score: 83.6 bits (205), Expect = 1.090e-17
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:   16 DESQLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQPLLVATCAKTGKTFLKCDYNRDGDSFR 228
            D++Q   AL+L++R+ P  +  NL  +T+L P+ E+DLL  VDQPL  A C KTG+ +L CDYNRDGDS+R
Sbjct:    3 DDAQFDAALDLLRRLSPLSVADNLKAITSLVPDLEEDLLSSVDQPLTSARCKKTGRDYLLCDYNRDGDSYR 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Match: A0A6A5C1Z6_NAEFO (F-actin-capping protein subunit beta n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C1Z6_NAEFO)

HSP 1 Score: 83.2 bits (204), Expect = 1.510e-17
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   16 DESQLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQPLLVATCAKTGKTFLKCDYNRDGDSFR 228
            ++ QL  AL+L +R+PPS++  NL+ +T LAP   DDLL+ VD PL +  C +TGK +L CDYNRDGDS+R
Sbjct:    4 EDKQLNCALDLFRRLPPSQLETNLSFVTELAPHLTDDLLQTVDCPLKIKKCPETGKDYLICDYNRDGDSYR 74
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73623.17446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2F5N5_9STRA7.780e-2052.63F-actin-capping protein subunit beta n=1 Tax=Dicty... [more]
D2VJJ6_NAEGR7.290e-1954.93F-actin-capping protein subunit beta n=1 Tax=Naegl... [more]
A0A139AMB6_GONPJ1.390e-1856.34F-actin-capping protein subunit beta n=1 Tax=Gonap... [more]
F0YCA6_AURAN2.250e-1851.35F-actin-capping protein subunit beta n=1 Tax=Aureo... [more]
A0A1S8VHQ7_9FUNG2.600e-1860.29F-actin-capping protein subunit beta n=1 Tax=Batra... [more]
A0A4P9XTA7_9FUNG2.800e-1855.88F-actin-capping protein subunit beta n=1 Tax=Thamn... [more]
F4NVU3_BATDJ1.000e-1760.29F-actin-capping protein subunit beta n=2 Tax=Batra... [more]
UPI001E1DBC4C1.090e-1755.71F-actin-capping protein subunit beta-like isoform ... [more]
A0A0D1ZDK7_EXOME1.090e-1752.11F-actin-capping protein subunit beta n=2 Tax=Exoph... [more]
A0A6A5C1Z6_NAEFO1.510e-1753.52F-actin-capping protein subunit beta n=2 Tax=Naegl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73623contigM-pyrifera_M_contig73623:98..325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue5.2e-15
Seed eggNOG ortholog5762.XP_002675701.1
KEGG koko:K10365
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008290,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009987,GO:0010639,GO:0015629,GO:0016043,GO:0030029,GO:0030036,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030837,GO:0031333,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043244,GO:0043254,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051015,GO:0051016,GO:0051128,GO:0051129,GO:0051493,GO:0051494,GO:0051693,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0110053,GO:1901879,GO:1901880,GO:1902903,GO:1902904
EggNOG free text desc.barbed-end actin filament capping
EggNOG OGsKOG3174@1,KOG3174@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Exons1
Model size228
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.4140885-CDS-M-pyrifera_M_contig73623:97..3251622816633.4140885-CDS-M-pyrifera_M_contig73623:97..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73623 98..325 -
1692278089.1487896-CDS-M-pyrifera_M_contig73623:97..3251692278089.1487896-CDS-M-pyrifera_M_contig73623:97..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73623 98..325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73623.17446.1prot_M-pyrifera_M_contig73623.17446.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73623 98..325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73623.17446.1

>prot_M-pyrifera_M_contig73623.17446.1 ID=prot_M-pyrifera_M_contig73623.17446.1|Name=mRNA_M-pyrifera_M_contig73623.17446.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MAGEGDESQLMHALNLVQRMPPSEIRGNLAKLTALAPEAEDDLLEKVDQP
LLVATCAKTGKTFLKCDYNRDGDSFR
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mRNA from alignment at M-pyrifera_M_contig73623:98..325-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73623.17446.1 ID=mRNA_M-pyrifera_M_contig73623.17446.1|Name=mRNA_M-pyrifera_M_contig73623.17446.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig73623:98..325- (Macrocystis pyrifera P11B4 male)
ATGGCTGGAGAAGGCGACGAATCGCAGCTGATGCACGCGCTGAACCTGGT
GCAGCGCATGCCCCCGTCGGAGATCCGCGGGAACTTGGCCAAGCTGACGG
CGCTGGCGCCAGAGGCGGAGGATGACCTCTTGGAAAAAGTGGACCAGCCT
TTGCTCGTGGCCACCTGCGCCAAAACGGGAAAAACCTTCCTCAAATGCGA
CTACAACAGGGACGGAGACTCCTTCCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73623:98..325-

>mRNA_M-pyrifera_M_contig73623.17446.1 ID=mRNA_M-pyrifera_M_contig73623.17446.1|Name=mRNA_M-pyrifera_M_contig73623.17446.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig73623:98..325- (Macrocystis pyrifera P11B4 male)
ATGGCTGGAGAAGGCGACGAATCGCAGCTGATGCACGCGCTGAACCTGGT
GCAGCGCATGCCCCCGTCGGAGATCCGCGGGAACTTGGCCAAGCTGACGG
CGCTGGCGCCAGAGGCGGAGGATGACCTCTTGGAAAAAGTGGACCAGCCT
TTGCTCGTGGCCACCTGCGCCAAAACGGGAAAAACCTTCCTCAAATGCGA
CTACAACAGGGACGGAGACTCCTTCCGGATGGCTGGAGAAGGCGACGAAT
CGCAGCTGATGCACGCGCTGAACCTGGTGCAGCGCATGCCCCCGTCGGAG
ATCCGCGGGAACTTGGCCAAGCTGACGGCGCTGGCGCCAGAGGCGGAGGA
TGACCTCTTGGAAAAAGTGGACCAGCCTTTGCTCGTGGCCACCTGCGCCA
AAACGGGAAAAACCTTCCTCAAATGCGACTACAACAGGGACGGAGACTCC
TTCCGG
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