mRNA_M-pyrifera_M_contig73549.17433.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73549.17433.1
Unique NamemRNA_M-pyrifera_M_contig73549.17433.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Match: A0A2R5GM28_9STRA (Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GM28_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.740e-12
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:    4 NSQVMRARVVWLMG--APVGLKLNKAIGTWLGGVALYVVEVWDSASRLTRPLEHVVLVILAFLATLGG--SLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILST 315
             S VMR RV+W++   AP+G KLN+ +   LG   L+ +E W   +    P    +L  +  L+ LGG  S+ +A A D  +  TLH  FLY  FARLH  QL+ +ST
Sbjct:  300 QSGVMRKRVLWVLSQHAPLGFKLNEGLDEVLGNTVLFAIESWHVFTAQLAPFGPQLLFTIGVLSLLGGGLSMVLAFACDAASFVTLHIQFLYNFFARLHRFQLAGMST 407
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BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Match: UPI000A2A5EB9 (phosphatidylinositol N-acetylglucosaminyltransferase subunit Q n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5EB9)

HSP 1 Score: 67.4 bits (163), Expect = 8.140e-11
Identity = 38/105 (36.19%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:    7 SQVMRARVVWLMGAPVGLKLNKAIGTWLGGVALYVVEVWDSASRLTRPLEHVVLVILAFLATLGGSLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILSTLS 321
            +Q++   + WLMG P GLKLNK +  +LG   LY + +W +  ++ +P    VL +      LG +  I+ A+D++++ TLH  F Y   ARL+SLQ+  + +LS
Sbjct:  321 AQLLTQLINWLMGVPGGLKLNKTLTNFLGKFFLYHIYLWQTYLQVIQPYLQPVLWMCIMSGCLGMTFLISMASDVFSLLTLHIYFFYVYAARLYSLQIYAILSLS 425
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BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Match: A0A8C5Q5D5_9ANUR (Phosphatidylinositol glycan anchor biosynthesis class Q n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5Q5D5_9ANUR)

HSP 1 Score: 65.9 bits (159), Expect = 2.810e-10
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   34 WLMGAPVGLKLNKAIGTWLGGVALYVVEVWDSASRLTRPLEHVVLVILAFLATLGGSLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILSTL 318
            WLMGAP GLK+NKA+   LG   +Y + +W S  RL  P   V+L  +   A LG S+A++  +DI A+ T H    Y   ARL+ L++  L++L
Sbjct:  306 WLMGAPAGLKMNKALDEVLGRFFMYHIHLWISYIRLMSPFIEVILWYIGLSACLGLSVALSVLSDIIALLTFHIYCFYVYGARLYCLKIHGLASL 400
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BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Match: A0A401SZ52_CHIPU (Uncharacterized protein n=3 Tax=Orectolobiformes TaxID=30503 RepID=A0A401SZ52_CHIPU)

HSP 1 Score: 65.9 bits (159), Expect = 2.820e-10
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   34 WLMGAPVGLKLNKAIGTWLGGVALYVVEVWDSASRLTRPLEHVVLVILAFLATLGGSLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILSTL 318
            WLMGAP GLK+NKA+   LG   LY + +W S   LT P   ++L  +   A LG ++A++  +DI A+ T H    Y   ARL+ L++  LS+L
Sbjct:  326 WLMGAPAGLKMNKALDEVLGRFFLYHIHLWISYIHLTSPFIEMILWYVGLAACLGLTVALSVVSDIIALLTFHIYCFYVYGARLYCLKIYGLSSL 420
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BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Match: UPI001ABE1599 (phosphatidylinositol N-acetylglucosaminyltransferase subunit Q n=2 Tax=Bufo TaxID=8383 RepID=UPI001ABE1599)

HSP 1 Score: 65.5 bits (158), Expect = 3.830e-10
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   34 WLMGAPVGLKLNKAIGTWLGGVALYVVEVWDSASRLTRPLEHVVLVILAFLATLGGSLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILSTL 318
            WLMGAP GLK+N+A+   LG   +Y + +W S  RL  P   V+L  +   A LG S+A++  +DI A+ T H    Y   ARL+ L++  LS+L
Sbjct:  308 WLMGAPAGLKMNRALDEVLGRFFMYHIHLWISYIRLMSPFIEVILWYIGLSACLGLSVALSILSDIIALLTFHIYCFYVYGARLYCLKMHGLSSL 402
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BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Match: A0A821GVY2_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821GVY2_9NEOB)

HSP 1 Score: 65.5 bits (158), Expect = 3.850e-10
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   34 WLMGAPVGLKLNKAIGTWLGGVALYVVEVWDSASRLTRPLEHVVLVILAFLATLGGSLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILSTL 318
            WLMGAP GLK+N+A+   LG   +Y + +W S  RL  P   V+L  +   A LG S+A++  +DI A+ T H    Y   ARL+ L++  LS+L
Sbjct:  308 WLMGAPAGLKMNRALDEVLGRFFMYHIHLWISYIRLMSPFIEVILWYIGLSACLGLSVALSILSDIIALLTFHIYCFYVYGARLYCLKMHGLSSL 402
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BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Match: A0A0G4ELH4_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELH4_VITBC)

HSP 1 Score: 64.7 bits (156), Expect = 7.320e-10
Identity = 42/104 (40.38%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:   16 MRARVVWLMGAPVGLKLNKAIGTWLGGVALYVVEVW-DSASRLTRPLEHVV-LVILAFLATLGGSLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILSTLS 321
            +R ++ WLM AP+G+K+N+++G +LGG+ L  +E+W D    L   L  +V LV L  +A LG S  +A A DI  + TLH  ++Y   ARL S+ +S +  LS
Sbjct:  399 LRRQLEWLMVAPLGVKVNRSVGGFLGGLMLTTIELWGDLTGHLAAYLPALVRLVGLCGVAGLGVSFQLAMAIDILTIATLHLCYIYVGLARLWSVSISCIFALS 502
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BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Match: UPI001CFBB25E (phosphatidylinositol N-acetylglucosaminyltransferase subunit Q n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBB25E)

HSP 1 Score: 64.3 bits (155), Expect = 9.780e-10
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   34 WLMGAPVGLKLNKAIGTWLGGVALYVVEVWDSASRLTRPLEHVVLVILAFLATLGGSLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILSTL 318
            WLMGAP GLK+N+A+   LG   LY + +W S   L  P   ++L  +  LA+LG ++A++  +DI A+ T H    Y   ARL+ L +  LS+L
Sbjct:  322 WLMGAPAGLKMNRALDQVLGRFFLYHIHLWISYIHLMSPFIEMILWYVGLLASLGLTVALSVISDIIALLTFHIYCFYVYGARLYCLMVHGLSSL 416
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BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Match: Q6GPR4_XENLA (MGC82665 protein n=3 Tax=Xenopus TaxID=8353 RepID=Q6GPR4_XENLA)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-9
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:   34 WLMGAPVGLKLNKAIGTWLGGVALYVVEVWDSASRLTRPLEHVVLVILAFLATLGGSLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILSTL 318
            WLMGAP GLK+N+A+   LG   +Y + +W S  RL  P   V+L  +   A LG S+A++  +DI A+ T H    Y   ARL+  ++  LS+L
Sbjct:  308 WLMGAPAGLKMNRALDEVLGRFFMYHIHLWISYIRLMSPFIEVILWYIGLSACLGLSVALSILSDIIALLTFHIYCFYVYGARLYCFKMHGLSSL 402
[Close]
BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Match: UPI0007EE73B7 (phosphatidylinositol N-acetylglucosaminyltransferase subunit Q n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0007EE73B7)

HSP 1 Score: 63.9 bits (154), Expect = 1.330e-9
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   34 WLMGAPVGLKLNKAIGTWLGGVALYVVEVWDSASRLTRPLEHVVLVILAFLATLGGSLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILSTL 318
            WLMGAP GLK+N+A+   LG   LY + +W S   LT P    +L  + F A LG ++A++  +DI A+ T H    Y   ARL+ L++  LS+L
Sbjct:  323 WLMGAPAGLKMNRALDQVLGRFFLYHIHLWISYVHLTSPFIERILWHVGFSACLGLTVAMSVLSDIIALLTFHIYCFYVYGARLYCLKICGLSSL 417
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73549.17433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5GM28_9STRA6.740e-1239.81Phosphatidylinositol N-acetylglucosaminyltransfera... [more]
UPI000A2A5EB98.140e-1136.19phosphatidylinositol N-acetylglucosaminyltransfera... [more]
A0A8C5Q5D5_9ANUR2.810e-1041.05Phosphatidylinositol glycan anchor biosynthesis cl... [more]
A0A401SZ52_CHIPU2.820e-1041.05Uncharacterized protein n=3 Tax=Orectolobiformes T... [more]
UPI001ABE15993.830e-1041.05phosphatidylinositol N-acetylglucosaminyltransfera... [more]
A0A821GVY2_9NEOB3.850e-1041.05(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A0G4ELH4_VITBC7.320e-1040.38Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
UPI001CFBB25E9.780e-1040.00phosphatidylinositol N-acetylglucosaminyltransfera... [more]
Q6GPR4_XENLA1.330e-940.00MGC82665 protein n=3 Tax=Xenopus TaxID=8353 RepID=... [more]
UPI0007EE73B71.330e-941.05phosphatidylinositol N-acetylglucosaminyltransfera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73549contigM-pyrifera_M_contig73549:773..1099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score75.5
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog192875.XP_004342647.1
Preferred namePIGQ
KEGG koko:K03860
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categorysignal anchor
GOsGO:0000506,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005975,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016254,GO:0016740,GO:0016757,GO:0016758,GO:0017176,GO:0019538,GO:0019637,GO:0031224,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509,GO:1990234
EggNOG free text desc.phosphatidylinositol N-acetylglucosaminyltransferase activity
EggNOG OGs39UWG@33154,KOG1183@1,KOG1183@2759
COG Functional cat.MO
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size327
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.739787-UTR-M-pyrifera_M_contig73549:772..7871622816632.739787-UTR-M-pyrifera_M_contig73549:772..787Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73549 773..787 +
1692278088.8259435-UTR-M-pyrifera_M_contig73549:772..7871692278088.8259435-UTR-M-pyrifera_M_contig73549:772..787Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73549 773..787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.7506683-CDS-M-pyrifera_M_contig73549:787..10991622816632.7506683-CDS-M-pyrifera_M_contig73549:787..1099Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73549 788..1099 +
1692278088.8385012-CDS-M-pyrifera_M_contig73549:787..10991692278088.8385012-CDS-M-pyrifera_M_contig73549:787..1099Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73549 788..1099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73549.17433.1prot_M-pyrifera_M_contig73549.17433.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73549 788..1099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73549.17433.1

>prot_M-pyrifera_M_contig73549.17433.1 ID=prot_M-pyrifera_M_contig73549.17433.1|Name=mRNA_M-pyrifera_M_contig73549.17433.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MRARVVWLMGAPVGLKLNKAIGTWLGGVALYVVEVWDSASRLTRPLEHVV
LVILAFLATLGGSLAIATATDIWAVFTLHTNFLYRLFARLHSLQLSILST
LSLL
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mRNA from alignment at M-pyrifera_M_contig73549:773..1099+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73549.17433.1 ID=mRNA_M-pyrifera_M_contig73549.17433.1|Name=mRNA_M-pyrifera_M_contig73549.17433.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig73549:773..1099+ (Macrocystis pyrifera P11B4 male)
CTGAATTCGCAGGTGATGCGAGCTCGTGTGGTGTGGCTGATGGGCGCACC
CGTGGGCCTCAAGCTGAACAAGGCCATTGGCACGTGGCTGGGCGGCGTGG
CGCTGTATGTGGTGGAGGTGTGGGATTCAGCCTCGAGGCTCACTCGACCA
TTGGAACACGTGGTTCTCGTCATCCTCGCCTTTTTGGCCACTCTCGGTGG
ATCTCTGGCCATCGCCACTGCCACTGACATTTGGGCCGTGTTTACGCTGC
ACACAAACTTCCTGTACCGGCTTTTTGCGCGTCTGCACTCTCTGCAGCTC
TCGATCCTCTCCACGCTCTCCTTGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73549:773..1099+

>mRNA_M-pyrifera_M_contig73549.17433.1 ID=mRNA_M-pyrifera_M_contig73549.17433.1|Name=mRNA_M-pyrifera_M_contig73549.17433.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig73549:773..1099+ (Macrocystis pyrifera P11B4 male)
ATGCGAGCTCGTGTGGTGTGGCTGATGGGCGCACCCGTGGGCCTCAAGCT
GAACAAGGCCATTGGCACGTGGCTGGGCGGCGTGGCGCTGTATGTGGTGG
AGGTGTGGGATTCAGCCTCGAGGCTCACTCGACCATTGGAACACGTGGTT
CTCGTCATCCTCGCCTTTTTGGCCACTCTCGGTGGATCTCTGGCCATCGC
CACTGCCACTGACATTTGGGCCGTGTTTACGCTGCACACAAACTTCCTGT
ACCGGCTTTTTGCGCGTCTGCACTCTCTGCAGCTCTCGATCCTCTCCACG
CTCTCCTTGCTGATGCGAGCTCGTGTGGTGTGGCTGATGGGCGCACCCGT
GGGCCTCAAGCTGAACAAGGCCATTGGCACGTGGCTGGGCGGCGTGGCGC
TGTATGTGGTGGAGGTGTGGGATTCAGCCTCGAGGCTCACTCGACCATTG
GAACACGTGGTTCTCGTCATCCTCGCCTTTTTGGCCACTCTCGGTGGATC
TCTGGCCATCGCCACTGCCACTGACATTTGGGCCGTGTTTACGCTGCACA
CAAACTTCCTGTACCGGCTTTTTGCGCGTCTGCACTCTCTGCAGCTCTCG
ATCCTCTCCACGCTCTCCTTGCTG
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