mRNA_M-pyrifera_M_contig7347.17418.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7347.17418.1 vs. uniprot
Match: D7FQA6_ECTSI (DBC1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQA6_ECTSI) HSP 1 Score: 234 bits (598), Expect = 1.510e-62 Identity = 149/289 (51.56%), Postives = 170/289 (58.82%), Query Frame = 1 Query: 2131 QRRLEPSPLAKTVWSIGDLASRFPKLAVPESLTHVIASWVALDTRAIGVVPMLCQPIHAAXXXXXXXXXXXXXKIANGASGKRVANGKRKRVETEISRALDEGGGTEGRAAAAAAAVAGGNAQGRAWEARVLVPYGLVPEQAADGCWAEAMRLVLAPS-------TAGVCSEVKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVDANGSAAETPLTLPGGLWDPELDGGDPEVDDNRALISTAVRVCQKPGGVDLAHCSSWLKFCELHEEDRTTVVFLCGGGVRAAE 2976 ++RLEP+PL+K WS+GDL + FP LA+P+SLTH IASW ALDTRAIGV+PMLCQP+ A + G + GK A R WEARVLVP+GL+PE+AA GCW EA+RLVLAPS TA K XXXXXXXXXXXXX D + LTLPGGLWD ELDGGDPE DDNRALISTAVR C+ G VDLA CS+WLKF ELH+E+RTTVVFLCGGGVR AE Sbjct: 287 EQRLEPTPLSKLTWSVGDLMNSFPGLAIPDSLTHAIASWAALDTRAIGVIPMLCQPLTDARAAAGEESV---------SRGPHASGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASEGPVRVWEARVLVPFGLIPEKAAKGCWGEALRLVLAPSQVASTTPTAACKQRDKVSDPDAEXXXXXXXXXXXXXEGIVTELAEDKKGIDPLVEGRSLTLPGGLWDEELDGGDPEADDNRALISTAVRTCKTAGSVDLARCSTWLKFSELHDEERTTVVFLCGGGVRVAE 566
BLAST of mRNA_M-pyrifera_M_contig7347.17418.1 vs. uniprot
Match: A0A6H5L5S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5S1_9PHAE) HSP 1 Score: 136 bits (343), Expect = 6.030e-29 Identity = 210/597 (35.18%), Postives = 260/597 (43.55%), Query Frame = 1 Query: 670 DSDRDWRRDEGR---GEVQPP-LAVSVEGVTLGGRGVRAADDPAG------VHVRLPLRGKP-PPARKGRL-PGGQPQPQERESQWWLPSRQEQFPP----QGPRGVDGALP--GYAHGCDYSHDRPVSPPKLASAAGQQPWQ-NRQRSVDSFHSSXXXXXXXXXXXXXXSDGFQSRGYLSGVD--RLPGRATPPPDAGPQLPNGG--QRRSAYAQAMHNKRFTG-SASRGXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPHAPMPFRPHDPGPQFPRCTSYPPQPPFQEGPPSGHWD-IGFGDG--------------------RFCDGGGXXXXXXXXXXXVDVEEDPTRRPAGGTAWGSLCGGGEDE-EAFPLVHTSPEWTPGIGRGALVVQRRDKSPQSGPAGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATAKATTATKGGSETAISESDGKAETERDPSPPAAQTAEPAVEAPAQDPEPGKVASVASFAVENVAAASVEDSAKPS-DAVAAPADNPAKTAR------QRRLEPSPLAKTVWSIGDLASRFPKLAVPESLTHVIASWVALDTRAIGVVPMLCQPI 2301 D D R EGR G+ QP LAV++E VTLGGR RA P G VHVRLPL+G+P PPA G L P PQ+ W +Q+QFPP PR GA+P GYAHG SPP W N+ FH XXXXXX RLP P A P NGG +RRSAYA AMHNKRF G S ++G XXXXXX AP DP P R PP + P +G + IG G G XXXXXXXXXXX W SL G E++ E FPLVHTSPEWTP A V++R +S A +G ++ + GS A ++G+ E++R VE+ +D E + S+A A+V + KP+ DA A A + + ++ +RRLEPSPL++ WS+GDL + FP LA+P+SLTH IASW ALDTRAIGV+PMLCQP+ Sbjct: 447 DGDESRRLREGRNLGGDRQPSRLAVTMESVTLGGR--RAPPPPRGPHGGRGVHVRLPLQGRPAPPAHHGALLPPRGAMPQDHNPHWR--QQQQQFPPGRGLPPPRANIGAVPQGGYAHGS-------ASPPPR--------WPINQHAGARPFHGGGVGNASEGXXXXXXXXXXXXXXXXXXXXXARLPINHPRAPLAPPGPSNGGGQERRSAYATAMHNKRFMGASGNQGPGGGAGEPQQGLSAXXXXXXFGLPTGRPPVMAPR----GDPRPPLVRHGFQGRGPPARGPPGTGAFGGIGIGGGVXXXXXXXRLGVAPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWVSLGGSNEEDGEGFPLVHTSPEWTP-----AWVMKRDHRSGTVQGAYRGNAGGGDCEAGTSVGCGEEGVGGDERVQRESAMSESN-------GSSAAARAAEGRNESDRPRL---------LVESAVRDKEEEEAGSLAG--------AAVGEGGKPATDAGGATASSSSCSSVTLLPPCERRLEPSPLSRLTWSVGDLMNSFPGLAIPDSLTHAIASWAALDTRAIGVIPMLCQPL 991
BLAST of mRNA_M-pyrifera_M_contig7347.17418.1 vs. uniprot
Match: A0A7S1XPR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPR5_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 7.400e-8 Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 1 Query: 2737 GSAAETPLTLPGGLWDPELDGGDPEVDDNRALISTAVRVCQKPGGVDLAHCSSWLKFCELHEED 2928 G P LPGG W+ E DGGDPEVDD LI TAVR ++ ++L C SW+KF E H ++ Sbjct: 31 GGGDGAPAALPGGYWNAEEDGGDPEVDD-ACLICTAVREVRRTFNLNLQGCRSWVKFLEFHYDE 93
BLAST of mRNA_M-pyrifera_M_contig7347.17418.1 vs. uniprot
Match: A0A2R6WE85_MARPO (EF-hand domain-containing protein n=5 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WE85_MARPO) HSP 1 Score: 61.2 bits (147), Expect = 1.150e-5 Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1 Query: 2770 GGLWDPELDGGDPEVDDNRALISTAVRVCQKPGGVDLAHCSSWLKFCELHEE 2925 GG+WD ELDGGDP +D+ ALI TA+R ++ +DL+ C +W++F E+H E Sbjct: 766 GGVWDKELDGGDPAIDEE-ALIRTAIRCTKQATQLDLSQCKNWIRFLEVHYE 816 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7347.17418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7347.17418.1 >prot_M-pyrifera_M_contig7347.17418.1 ID=prot_M-pyrifera_M_contig7347.17418.1|Name=mRNA_M-pyrifera_M_contig7347.17418.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=1002bp HAPPTLLQPQGASPRPSSRSAPTDPRRRRPRTSPRASSRGGSKSGSRSGSback to top mRNA from alignment at M-pyrifera_M_contig7347:292..7194- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7347.17418.1 ID=mRNA_M-pyrifera_M_contig7347.17418.1|Name=mRNA_M-pyrifera_M_contig7347.17418.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6903bp|location=Sequence derived from alignment at M-pyrifera_M_contig7347:292..7194- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7347:292..7194- >mRNA_M-pyrifera_M_contig7347.17418.1 ID=mRNA_M-pyrifera_M_contig7347.17418.1|Name=mRNA_M-pyrifera_M_contig7347.17418.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=6012bp|location=Sequence derived from alignment at M-pyrifera_M_contig7347:292..7194- (Macrocystis pyrifera P11B4 male)back to top |