mRNA_M-pyrifera_M_contig73430.17413.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73430.17413.1
Unique NamemRNA_M-pyrifera_M_contig73430.17413.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73430.17413.1 vs. uniprot
Match: C1FET5_MICCC (ULP_PROTEASE domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FET5_MICCC)

HSP 1 Score: 54.7 bits (130), Expect = 5.190e-6
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 1 
Query:    1 VCRWTIRGNPA-EVYARDFVLSPCNSGETHWSLLVMDRKYKVVRILNSLPALGNTSQKRQSKMLIRWIHDEIEDKLHPKSERKRGRKGKSRMKAKEEWMPQQDNSCDCGVYVIRAAEAIASGRKPSLSHDQVPFLRLHYLLTLLRTGFVI 447
            V RWT +     +V   D V+ P + G  HW L V+D   K VR  +SL  LG+   K   K L+RW+ DE ++K     +      G S    K+  +P+Q N CDCGV++++ A+ IA+G   +     + + R   +   +  G  +
Sbjct:  110 VRRWTTKKKLGYDVLECDKVIIPVHQG-IHWVLAVIDLAAKCVRFYDSL--LGD--DKGLVKDLLRWVRDEWKNKKDADVDTD----GWSVEIPKD--IPRQMNGCDCGVFMLKYADYIATGCPLTFHQRDMEYFRQRIVADAMEKGISV 248
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BLAST of mRNA_M-pyrifera_M_contig73430.17413.1 vs. uniprot
Match: A0A0X3PIM3_SCHSO (ULP_PROTEASE domain-containing protein n=3 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PIM3_SCHSO)

HSP 1 Score: 54.7 bits (130), Expect = 7.660e-6
Identity = 40/151 (26.49%), Postives = 71/151 (47.02%), Query Frame = 1 
Query:    1 VCRWTIRGNPAEVYARDFVLSPCNSGETHWSLLVMDRKYKVVRILNSLPALGNTSQKRQSKMLIRWIHDEIEDKLHPKSERKRGRKGKSRMKAKEEW--------MPQQDNSCDCGVYVIRAAEAIASGRKPSLSHDQVPFLRLHYLLTLL 429
            V RWT + N   ++  D VL P +    HW L   D + K +   +S+   GN        +L+++++ E +DKL            K  ++  ++W        +PQQ+N CDCGV++   AE ++ G + + S   +P +R   +  +L
Sbjct:  314 VRRWTRQIN---LFEHDLVLIPIHDRGIHWCLAAADLRDKTLTYYDSMGG-GND---HCLDVLLKYLNAESQDKL------------KKSLEGLDKWKKINTRNSVPQQENGCDCGVFLCTFAEFLSRGAEFTFSQADMPQIRQRMMYEIL 445
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BLAST of mRNA_M-pyrifera_M_contig73430.17413.1 vs. uniprot
Match: A0A7S0PPK7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PPK7_MICPS)

HSP 1 Score: 54.3 bits (129), Expect = 8.080e-6
Identity = 45/154 (29.22%), Postives = 70/154 (45.45%), Query Frame = 1 
Query:    1 VCRWTIRGNPA-EVYARDFVLSPCNSGETHWSLLVMDRKYKVVRILNSLPALGNTSQKRQSKMLIRWIHDEIEDKLHPKSERKRGRKGKSRMKAKEEW-------MPQQDNSCDCGVYVIRAAEAIASGRKPSLSHDQVPFLRLHYLLTLLRTG 438
            V RWT R     +V   D V+ P + G  HW L V+D K   VR  +SL  LG+   K   + L+RW+ DE  +K +   +              E W       +P+Q N CDCGV++++ A+ IA+G   +     + + R   +   +  G
Sbjct:  144 VRRWTTRKKLGYDVLECDKVIVPVHQG-IHWVLAVVDFKATCVRFYDSL--LGD--DKGLVEDLLRWVRDEWRNKKNADVDT-------------ESWSVEIPKDIPRQMNGCDCGVFMLKYADYIATGCPLTFHQRDMEYFRRRIVADAVEKG 279
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BLAST of mRNA_M-pyrifera_M_contig73430.17413.1 vs. uniprot
Match: UPI00063ED846 (sentrin-specific protease 8 n=1 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI00063ED846)

HSP 1 Score: 53.9 bits (128), Expect = 8.700e-6
Identity = 34/117 (29.06%), Postives = 56/117 (47.86%), Query Frame = 1 
Query:   25 NPAEVYARDFVLSPCN------SGETHWSLLVMDRKYKVVRILNSLPALGNTSQKRQSKMLIRWIHDEIEDKLHPKSERKRGRKGKSRMKAKEEWMPQQDNSCDCGVYVIRAAEAIA 357
            +P E  + DF+  P N      +G +HWSLL+  R  K+    +S   + N S K+ ++ +I++  ++ E +   K                    PQQDNS DCG+YV+  A+ I+
Sbjct:   96 DPIEAKSYDFIFFPLNDCDSNEAGGSHWSLLIYSRVEKMCYHFDSSIGINNFSAKKLARKVIKYFLEKQEKRYIEKD------------------CPQQDNSYDCGLYVLCLADVIS 194
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BLAST of mRNA_M-pyrifera_M_contig73430.17413.1 vs. uniprot
Match: C1DZT2_MICCC (ULP_PROTEASE domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZT2_MICCC)

HSP 1 Score: 53.5 bits (127), Expect = 2.130e-5
Identity = 44/154 (28.57%), Postives = 70/154 (45.45%), Query Frame = 1 
Query:    1 VCRWTIRGNPA-EVYARDFVLSPCNSGETHWSLLVMDRKYKVVRILNSLPALGNTSQKRQSKMLIRWIHDEIEDKLHPKSERKRGRKGKSRMKAKEEW-------MPQQDNSCDCGVYVIRAAEAIASGRKPSLSHDQVPFLRLHYLLTLLRTG 438
            V RWT +     +V   D V+ P + G  HW L V+D   K VR  +SL  LG+   K   + L+RW+ DE ++K     +              E W       +P+Q N CDCGV++++ A+ IA+G   +     + + R   +   +  G
Sbjct:  733 VRRWTTKKKLGYDVLECDKVIIPVHQG-IHWVLAVIDLAAKCVRFYDSL--LGD--DKGLVEDLLRWVRDEWKNKKDADVDT-------------ESWSVEIPKDIPRQMNGCDCGVFMLKYADYIATGCPLTFHQRDMEYFRRRIVADAMEKG 868
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BLAST of mRNA_M-pyrifera_M_contig73430.17413.1 vs. uniprot
Match: A0A7M3Q682_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3Q682_SPIER)

HSP 1 Score: 52.0 bits (123), Expect = 6.790e-5
Identity = 40/145 (27.59%), Postives = 68/145 (46.90%), Query Frame = 1 
Query:    1 VCRWTIRGNPAEVYARDFVLSPCNSGETHWSLLVMDRKYKVVRILNSLPALGNTSQKRQSKMLIRWIHDEIEDKLHPKSERKRGRKGKSRMKA--KEEWMPQQDNSCDCGVYVIRAAEAIASGRKPSLSHDQVPFLRLHYLLTLL 429
            V RWT + N   ++  D V  P +    HW L   D + K +   +S+   GN        +L+ ++  E +DKL      K+   G  + K    +  +PQQ+N CDCGV++   AE ++ G + + S   +P +R   +  +L
Sbjct:  391 VRRWTRQIN---LFEHDLVFFPIHDRGIHWCLAAADLRNKTLTYYDSMGG-GND---HCLDILLEYLDAECQDKL------KKSLDGLDKWKKINTKNSVPQQENGCDCGVFLCTFAEFLSRGAEFTFSQADMPQIRQRMMYEIL 522
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73430.17413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
C1FET5_MICCC5.190e-630.67ULP_PROTEASE domain-containing protein n=1 Tax=Mic... [more]
A0A0X3PIM3_SCHSO7.660e-626.49ULP_PROTEASE domain-containing protein n=3 Tax=Sch... [more]
A0A7S0PPK7_MICPS8.080e-629.22Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
UPI00063ED8468.700e-629.06sentrin-specific protease 8 n=1 Tax=Monomorium pha... [more]
C1DZT2_MICCC2.130e-528.57ULP_PROTEASE domain-containing protein n=1 Tax=Mic... [more]
A0A7M3Q682_SPIER6.790e-527.59Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73430contigM-pyrifera_M_contig73430:554..1096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score62.8
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog29176.XP_003884765.1
KEGG koko:K08592
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005912,GO:0005924,GO:0005925,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006807,GO:0006915,GO:0006919,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008234,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0012505,GO:0016020,GO:0016787,GO:0016925,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0023052,GO:0030054,GO:0030055,GO:0030162,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0036211,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045862,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070122,GO:0070137,GO:0070138,GO:0070139,GO:0070140,GO:0070161,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0097190,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000116,GO:2001056,GO:2001141
EggNOG free text desc.Ulp1 protease family, C-terminal catalytic domain-containing protein
EggNOG OGs3YAQ3@5794,3YMYV@5796,3YRM1@5809,COG5160@1,KOG0778@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size450
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.7160408-CDS-M-pyrifera_M_contig73430:553..7221622816631.7160408-CDS-M-pyrifera_M_contig73430:553..722Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73430 554..722 -
1692278088.2702966-CDS-M-pyrifera_M_contig73430:553..7221692278088.2702966-CDS-M-pyrifera_M_contig73430:553..722Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73430 554..722 -
1622816631.7281804-CDS-M-pyrifera_M_contig73430:815..10961622816631.7281804-CDS-M-pyrifera_M_contig73430:815..1096Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73430 816..1096 -
1692278088.282674-CDS-M-pyrifera_M_contig73430:815..10961692278088.282674-CDS-M-pyrifera_M_contig73430:815..1096Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73430 816..1096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73430.17413.1prot_M-pyrifera_M_contig73430.17413.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73430 554..1096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73430.17413.1

>prot_M-pyrifera_M_contig73430.17413.1 ID=prot_M-pyrifera_M_contig73430.17413.1|Name=mRNA_M-pyrifera_M_contig73430.17413.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
VCRWTIRGNPAEVYARDFVLSPCNSGETHWSLLVMDRKYKVVRILNSLPA
LGNTSQKRQSKMLIRWIHDEIEDKLHPKSERKRGRKGKSRMKAKEEWMPQ
QDNSCDCGVYVIRAAEAIASGRKPSLSHDQVPFLRLHYLLTLLRTGFVI*
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mRNA from alignment at M-pyrifera_M_contig73430:554..1096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73430.17413.1 ID=mRNA_M-pyrifera_M_contig73430.17413.1|Name=mRNA_M-pyrifera_M_contig73430.17413.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=543bp|location=Sequence derived from alignment at M-pyrifera_M_contig73430:554..1096- (Macrocystis pyrifera P11B4 male)
GTTTGTCGATGGACGATTCGTGGGAATCCTGCAGAAGTGTATGCTCGAGA
CTTTGTGTTATCCCCCTGCAATTCAGGAGAAACGCATTGGTCGTTGCTGG
TGATGGATCGCAAGTACAAAGTGGTGCGAATTCTCAACTCGCTCCCAGCT
CTTGGCAACACTTCCCAAAAGAGGCAGTCGAAGATGCTGATTCGATGGAT
CCACGATGAGATCGAAGACAAGCTACATCCAAAGAGCGAGAGGAAACGAG
GGCGGAAAGGCAAATCTAGGATGAAAGCAAAGTCTCCAAAGCCACCACAC
CCCACTCCCCCACCGCAATCCCCTCCCACCCACCTCCCGTCCCATGAAGA
AGAATGGGCAGTGCAGGTGGAGAGGGAGGAGTGGATGCCACAGCAAGACA
ACTCGTGTGACTGTGGAGTGTACGTCATCCGAGCAGCGGAAGCCATCGCC
AGCGGGAGAAAGCCCTCGCTCTCCCACGACCAAGTGCCCTTCCTCCGCCT
CCACTACCTCCTCACACTCCTACGCACCGGATTCGTCATTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73430:554..1096-

>mRNA_M-pyrifera_M_contig73430.17413.1 ID=mRNA_M-pyrifera_M_contig73430.17413.1|Name=mRNA_M-pyrifera_M_contig73430.17413.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig73430:554..1096- (Macrocystis pyrifera P11B4 male)
GTTTGTCGATGGACGATTCGTGGGAATCCTGCAGAAGTGTATGCTCGAGA
CTTTGTGTTATCCCCCTGCAATTCAGGAGAAACGCATTGGTCGTTGCTGG
TGATGGATCGCAAGTACAAAGTGGTGCGAATTCTCAACTCGCTCCCAGCT
CTTGGCAACACTTCCCAAAAGAGGCAGTCGAAGATGCTGATTCGATGGAT
CCACGATGAGATCGAAGACAAGCTACATCCAAAGAGCGAGAGGAAACGAG
GGCGGAAAGGCAAATCTAGGATGAAAGCAAAGTTTGTCGATGGACGATTC
GTGGGAATCCTGCAGAAGTGTATGCTCGAGACTTTGTGTTATCCCCCTGC
AATTCAGGAGAAACGCATTGGTCGTTGCTGGTGATGGATCGCAAGTACAA
AGTGGTGCGAATTCTCAACTCGCTCCCAGCTCTTGGCAACACTTCCCAAA
AGAGGCAGTCGAAGATGCTGATTCGATGGATCCACGATGAGATCGAAGAC
AAGCTACATCCAAAGAGCGAGAGGAAACGAGGGCGGAAAGGCAAATCTAG
GATGAAAGCAAAGGAGGAGTGGATGCCACAGCAAGACAACTCGTGTGACT
GTGGAGTGTACGTCATCCGAGCAGCGGAAGCCATCGCCAGCGGGAGAAAG
CCCTCGCTCTCCCACGACCAAGTGCCCTTCCTCCGCCTCCACTACCTCCT
CACACTCCTACGCACCGGATTCGTCATTTGAGGAGGAGTGGATGCCACAG
CAAGACAACTCGTGTGACTGTGGAGTGTACGTCATCCGAGCAGCGGAAGC
CATCGCCAGCGGGAGAAAGCCCTCGCTCTCCCACGACCAAGTGCCCTTCC
TCCGCCTCCACTACCTCCTCACACTCCTACGCACCGGATTCGTCATTTGA
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