mRNA_M-pyrifera_M_contig73351.17399.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73351.17399.1
Unique NamemRNA_M-pyrifera_M_contig73351.17399.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Match: A0A6A6Z3Z8_9PEZI (Glutaredoxin n=2 Tax=Mytilinidiaceae TaxID=281242 RepID=A0A6A6Z3Z8_9PEZI)

HSP 1 Score: 75.5 bits (184), Expect = 1.140e-14
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   34 PLFSLQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSIGGGDDVEDLHAKGKLDGILREAG 219
            P + ++ DK   G A+Q A+AK TGR TVPNV++ G+SIGGGDDVE LH KGKLD  +R  G
Sbjct:  186 PPYVVELDKHPLGPALQAALAKSTGRHTVPNVLINGRSIGGGDDVEALHQKGKLDSTIRSMG 247
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BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Match: UPI0009E614DC (glutaredoxin-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E614DC)

HSP 1 Score: 70.5 bits (171), Expect = 4.570e-14
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   40 FSLQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSIGGGDDVEDLHAKGKLDGILREAGAL 225
            F ++ D+V +G+AIQ A+ K TG RTVP V +GGK +GGG +V DL + GKL  +L+EAGAL
Sbjct:   45 FLMELDEVDDGAAIQDALQKVTGARTVPRVFIGGKFVGGGSEVRDLQSAGKLTKMLQEAGAL 106
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BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Match: A0A1Y2XAY4_9PEZI (Glutaredoxin domain-containing protein n=1 Tax=Daldinia sp. EC12 TaxID=1001832 RepID=A0A1Y2XAY4_9PEZI)

HSP 1 Score: 68.6 bits (166), Expect = 2.490e-13
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:   13 LPQHLHFPLFSLQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSIGGGDDVEDLHAKGKLDGILREAGAL 225
            L  HL     SL+ D+VR+GSAIQ A+A+ +G+RTVPN+ +G K IGG  D++  + KG+L  +L EAGAL
Sbjct:   34 LLNHLGARYRSLELDRVRDGSAIQDALAEISGQRTVPNIYIGKKHIGGNADLQAKYEKGELRNLLAEAGAL 104
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BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Match: A0A7S1B3V4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3V4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.890e-13
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   43 SLQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSIGGGDDVEDLHAKGKLDGILREAGAL 225
            S++ D++ +GS+IQ  +   TG+RTVPNV +GGKSIGGGDD   L   GKL  +L+ AGAL
Sbjct:   50 SVELDQMADGSSIQSGLLSLTGQRTVPNVFIGGKSIGGGDDTAALEQSGKLKTMLQAAGAL 110
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BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Match: A0A1J3JDH8_NOCCA (Glutaredoxin-C2 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JDH8_NOCCA)

HSP 1 Score: 67.4 bits (163), Expect = 2.930e-13
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   46 LQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSIGGGDDVEDLHAKGKLDGILREAGAL 225
            ++ DK  +GS IQ A+A+ TG+RTVPNV +GGK IGG D   +LH  GKL  +L EAGA+
Sbjct:    1 IELDKESDGSKIQSALAEWTGQRTVPNVFIGGKHIGGCDSTTNLHKNGKLVPLLTEAGAI 60
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BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Match: A0A5A8CHY5_CAFRO (Glutaredoxin domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CHY5_CAFRO)

HSP 1 Score: 68.6 bits (166), Expect = 3.420e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   46 LQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSIGGGDDVEDLHAKGKLDGILREAGAL 225
            ++ D+ R+GS IQ A+A  TG+RTVPNV V GKSIGGGD+   LH+ GKL  +L E GA+
Sbjct:   56 IELDQRRDGSQIQSALAAVTGQRTVPNVFVNGKSIGGGDETAYLHSSGKLRELLVECGAI 115
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BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Match: A0A3P6CQQ6_BRACM (Glutaredoxin domain-containing protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P6CQQ6_BRACM)

HSP 1 Score: 67.8 bits (164), Expect = 6.700e-13
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   13 LPQHLHFPLFSLQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSIGGGDDVEDLHAKGKLDGILREAGAL 225
            L Q L   L +++ DK  +GS +Q A+A+ TG+RTVPNV +G K IGG D V +LH  GKL  +L EAGA+
Sbjct:   37 LLQQLGAKLIAVELDKESDGSQVQSALAEWTGQRTVPNVFIGEKHIGGCDSVTNLHRDGKLVPMLTEAGAI 107
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BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Match: A0A6D2L6S0_9BRAS (Glutaredoxin domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2L6S0_9BRAS)

HSP 1 Score: 67.4 bits (163), Expect = 9.050e-13
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   43 SLQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSIGGGDDVEDLHAKGKLDGILREAGAL 225
            +++ DK  +GS IQ A+A+ TG+RTVPNV +GGK IGG D   +LH  GKL  +L EAGA+
Sbjct:   42 AVELDKESDGSKIQSALAEWTGQRTVPNVFIGGKHIGGCDSTTNLHKNGKLVTLLTEAGAI 102
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BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Match: A0A8H4J0E8_9PEZI (Putative glutaredoxin domain protein n=2 Tax=Botryosphaeriaceae TaxID=45131 RepID=A0A8H4J0E8_9PEZI)

HSP 1 Score: 70.9 bits (172), Expect = 9.360e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   40 FSLQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSIGGGDDVEDLHAKGKLDGILREAG 219
            + ++ D+   GSAIQ  + K TGRRTVPNV++ GKSIGGGDDVE LH KGK++  +R  G
Sbjct:  226 YVVELDQHPLGSAIQAQLEKSTGRRTVPNVLINGKSIGGGDDVEALHLKGKIEETVRSMG 285
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BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Match: A0A0D2RWD4_GOSRA (Glutaredoxin domain-containing protein n=12 Tax=Gossypium TaxID=3633 RepID=A0A0D2RWD4_GOSRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.530e-12
Identity = 36/71 (50.70%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   13 LPQHLHFPLFSLQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSIGGGDDVEDLHAKGKLDGILREAGAL 225
            L Q L     +++ DK  +GS IQ A+A+ TG+RTVPNV +GGK IGG D    LH +GKL  +L EAGA+
Sbjct:   32 LLQQLGASFKAIELDKESDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDSTMALHKEGKLVPLLTEAGAI 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73351.17399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6Z3Z8_9PEZI1.140e-1458.06Glutaredoxin n=2 Tax=Mytilinidiaceae TaxID=281242 ... [more]
UPI0009E614DC4.570e-1454.84glutaredoxin-like n=1 Tax=Orbicella faveolata TaxI... [more]
A0A1Y2XAY4_9PEZI2.490e-1350.70Glutaredoxin domain-containing protein n=1 Tax=Dal... [more]
A0A7S1B3V4_9STRA2.890e-1354.10Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A1J3JDH8_NOCCA2.930e-1355.00Glutaredoxin-C2 (Fragment) n=1 Tax=Noccaea caerule... [more]
A0A5A8CHY5_CAFRO3.420e-1356.67Glutaredoxin domain-containing protein n=3 Tax=Sar... [more]
A0A3P6CQQ6_BRACM6.700e-1350.70Glutaredoxin domain-containing protein n=1 Tax=Bra... [more]
A0A6D2L6S0_9BRAS9.050e-1354.10Glutaredoxin domain-containing protein n=1 Tax=Mic... [more]
A0A8H4J0E8_9PEZI9.360e-1356.67Putative glutaredoxin domain protein n=2 Tax=Botry... [more]
A0A0D2RWD4_GOSRA1.530e-1250.70Glutaredoxin domain-containing protein n=12 Tax=Go... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73351contigM-pyrifera_M_contig73351:353..580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score72.8
Seed ortholog evalue7.8e-11
Seed eggNOG ortholog35725.K2RV53
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0012505,GO:0015036,GO:0015037,GO:0015038,GO:0016020,GO:0016043,GO:0016226,GO:0016491,GO:0016667,GO:0019538,GO:0022607,GO:0031090,GO:0031163,GO:0031965,GO:0031967,GO:0031975,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044572,GO:0051186,GO:0051604,GO:0055114,GO:0071704,GO:0071840,GO:1901564
EggNOG free text desc.Glutaredoxin
EggNOG OGs20209@147541,3A30C@33154,3P3NK@4751,3QSKW@4890,COG0695@1,KOG1752@2759
COG Functional cat.O
Best tax levelDothideomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816630.8363132-CDS-M-pyrifera_M_contig73351:352..5801622816630.8363132-CDS-M-pyrifera_M_contig73351:352..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73351 353..580 -
1692278087.717827-CDS-M-pyrifera_M_contig73351:352..5801692278087.717827-CDS-M-pyrifera_M_contig73351:352..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73351 353..580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73351.17399.1prot_M-pyrifera_M_contig73351.17399.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73351 353..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73351.17399.1

>prot_M-pyrifera_M_contig73351.17399.1 ID=prot_M-pyrifera_M_contig73351.17399.1|Name=mRNA_M-pyrifera_M_contig73351.17399.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MCEHLPQHLHFPLFSLQQDKVRNGSAIQGAVAKRTGRRTVPNVIVGGKSI
GGGDDVEDLHAKGKLDGILREAGAL*
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mRNA from alignment at M-pyrifera_M_contig73351:353..580-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73351.17399.1 ID=mRNA_M-pyrifera_M_contig73351.17399.1|Name=mRNA_M-pyrifera_M_contig73351.17399.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig73351:353..580- (Macrocystis pyrifera P11B4 male)
ATGTGCGAACATCTCCCCCAACACCTCCATTTCCCTCTTTTTTCACTGCA
ACAGGACAAAGTTCGGAATGGTAGCGCGATTCAGGGGGCTGTGGCGAAGA
GAACGGGACGTCGTACTGTACCAAATGTGATTGTGGGGGGAAAGAGCATT
GGAGGTGGGGATGACGTGGAAGATTTGCACGCAAAAGGAAAGCTGGATGG
GATTTTGCGGGAAGCAGGGGCGTTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73351:353..580-

>mRNA_M-pyrifera_M_contig73351.17399.1 ID=mRNA_M-pyrifera_M_contig73351.17399.1|Name=mRNA_M-pyrifera_M_contig73351.17399.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig73351:353..580- (Macrocystis pyrifera P11B4 male)
ATGTGCGAACATCTCCCCCAACACCTCCATTTCCCTCTTTTTTCACTGCA
ACAGGACAAAGTTCGGAATGGTAGCGCGATTCAGGGGGCTGTGGCGAAGA
GAACGGGACGTCGTACTGTACCAAATGTGATTGTGGGGGGAAAGAGCATT
GGAGGTGGGGATGACGTGGAAGATTTGCACGCAAAAGGAAAGCTGGATGG
GATTTTGCGGGAAGCAGGGGCGTTGTGAATGTGCGAACATCTCCCCCAAC
ACCTCCATTTCCCTCTTTTTTCACTGCAACAGGACAAAGTTCGGAATGGT
AGCGCGATTCAGGGGGCTGTGGCGAAGAGAACGGGACGTCGTACTGTACC
AAATGTGATTGTGGGGGGAAAGAGCATTGGAGGTGGGGATGACGTGGAAG
ATTTGCACGCAAAAGGAAAGCTGGATGGGATTTTGCGGGAAGCAGGGGCG
TTGTGA
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