mRNA_M-pyrifera_M_contig73183.17364.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73183.17364.1
Unique NamemRNA_M-pyrifera_M_contig73183.17364.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Match: A0A0L0DRK6_THETB (Dynein heavy chain 2 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DRK6_THETB)

HSP 1 Score: 67.8 bits (164), Expect = 1.780e-11
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 ALQPKVMLPYKTRPGKTPRRIEVERRKRLYARQDIADLLAKRNVQLLTLAVEWRTDAGT---LPLEPFDDSSVD 213
            AL+PKVM  +KT PGKTPR+IE+ERRKR YA QD+ +LLA + V       E    A     LPLEPFDD+  +
Sbjct:  123 ALEPKVMSQFKTAPGKTPRKIEIERRKREYAAQDLEELLAAQGVDYRLSEAERNASAAFPSYLPLEPFDDTEFE 196          
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Match: UPI000719AE00 (dynein heavy chain 1, axonemal-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AE00)

HSP 1 Score: 59.3 bits (142), Expect = 1.700e-8
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    7 QPKVMLPYKTRPGKTPRRIEVERRKRLYARQDIADLLAKRNV---QLLTLAVEW---RTDAGT------LPLEPFDDSSVDEHD 222
            +PKV LPY T+PGK PR++E+ERRKR YARQDI  LL   N+   QL+   VE      D         L LE FDD++  +HD
Sbjct:  104 KPKVQLPYVTQPGKCPRKVEIERRKRDYARQDIKKLLLSHNIKTEQLIPTQVEQFANNLDVNKASFPVFLSLEIFDDTAEGKHD 187          
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Match: A0A1Y2CPT9_9FUNG (Uncharacterized protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CPT9_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 1.720e-8
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 ALQPKVMLPYKTRPGKTPRRIEVERRKRLYARQDIADLLAKRNVQLLTLAVEWRTDAGTLPLEPFDDSSVDE 216
            AL+PKV+LPY++RPG+TPR+IE+ERRKRLYA Q I  L+     + L         A  LPL  FDD   D+
Sbjct:  182 ALEPKVLLPYESRPGQTPRKIEIERRKRLYANQSIEVLIESALEEKLGDTPRDPL-ASKLPLSAFDDVEYDQ 252          
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Match: A0A507FTQ8_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FTQ8_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 4.390e-8
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 ALQPKVMLPYKTRPGKTPRRIEVERRKRLYARQDIADLLAKRNVQLLTLAVEWRTDAGTLPLEPFDDSSVDE 216
            AL+PKV+LPY++RPG+TPR+IE+ERRKRLYA Q I  L+ +       +A E    +  LPL  FD++  ++
Sbjct:  191 ALEPKVLLPYESRPGQTPRKIEIERRKRLYAAQSIDVLIDRAIADACGVAGEDSL-SKELPLAAFDNNEYEQ 261          
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Match: UPI000D1C3714 (uncharacterized protein LOC112343694 isoform X1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C3714)

HSP 1 Score: 56.2 bits (134), Expect = 6.000e-8
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    4 LQPKVMLPYKTRPGKTPRRIEVERRKRLYARQDIADLLAKRNVQLLTLAVEWRTDAGTLPLEPFDDSSVD 213
            L PKVM+PY T+ G+ PR+++VER+KRLYA QD   LLA   ++ L L  E     G LPL  FD++  +
Sbjct:   40 LDPKVMVPYVTKVGEIPRKVQVERKKRLYALQDAGVLLAAEGLENLDLGSE----TGRLPLHWFDNTDFE 105          
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Match: A0A0G4F7Q5_VITBC (Uncharacterized protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F7Q5_VITBC)

HSP 1 Score: 57.4 bits (137), Expect = 8.190e-8
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    4 LQPKVMLPYKTRPGKTPRRIEVERRKRLYARQDIADLLAKRNVQLLTLAVEWRTDAGTLPLEPFDDSSVD 213
            + PKV+ PY   PGK PR++ VERRK+LY   DIADLL +R V       + R     LPLEPFDD+  D
Sbjct:   82 VDPKVIEPYVQVPGKAPRKVIVERRKKLYESLDIADLLRERGVDYGDPQFDTRR---WLPLEPFDDTDFD 148          
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Match: A0A139AYH6_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AYH6_GONPJ)

HSP 1 Score: 57.0 bits (136), Expect = 1.120e-7
Identity = 25/38 (65.79%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    4 LQPKVMLPYKTRPGKTPRRIEVERRKRLYARQDIADLL 117
            L+PKV+LPY+ R G+TPR++E+ERRKRLYA+QDI+++L
Sbjct:   12 LEPKVLLPYENRAGQTPRKVEIERRKRLYAKQDISEIL 49          
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Match: A0A7M5V6N1_9CNID (Uncharacterized protein n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V6N1_9CNID)

HSP 1 Score: 56.6 bits (135), Expect = 1.530e-7
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    7 QPKVMLPYKTRPGKTPRRIEVERRKRLYARQDIADLLAK---RNVQLL-----TLAVEWRTDAGT-----LPLEPFDDSSVDEHDPE 228
            +PKV LP++T+PG+ PR+IEVERRKR + +Q++ DLLAK   +N QL+      + V  +   G+     LPLE FD++  D   PE
Sbjct:  112 KPKVQLPFRTQPGQMPRKIEVERRKRKFLKQNLEDLLAKEGIKNTQLIPKTSINMRVVVKPGDGSPFPCFLPLEIFDNTEYDCRTPE 198          
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Match: UPI001C05757F (dynein heavy chain 1, axonemal isoform X1 n=5 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C05757F)

HSP 1 Score: 56.2 bits (134), Expect = 2.090e-7
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   10 PKVMLPYKTRPGKTPRRIEVERRKRLYARQDIADLLAKRNVQLLTL------------AVEWRTDAGTLPLEPFDDSSVDEHDPE 228
            PKV++PYKT PG+TPR++E+ERR+R Y++ D+  LL ++ +   TL               +   +  LPLE FD+   D   PE
Sbjct:   86 PKVLIPYKTSPGQTPRKLEIERRRREYSQLDLEQLLVEKGIDSETLIPRQVKNSHEDVTTSYSPGSPFLPLELFDNEDFDSRTPE 170          
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Match: A0A5B8MFC9_9CHLO (Heavy chain of dynein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MFC9_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 2.090e-7
Identity = 30/69 (43.48%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    7 QPKVMLPYKTRPGKTPRRIEVERRKRLYARQDIADLLAKRNVQLLTLAVEWRTDAGTLPLEPFDDSSVD 213
            +PKVM+PYKT+PG+ PR++++ER+KRL+A QDI+ LL   +V L     + R     L +E FD+++ +
Sbjct:   65 EPKVMIPYKTKPGEVPRQVQIERKKRLFALQDISKLLDDEDVDLSDK--DMRGMGKKLKIETFDNTTYE 131          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73183.17364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0DRK6_THETB1.780e-1152.70Dynein heavy chain 2 n=1 Tax=Thecamonas trahens AT... [more]
UPI000719AE001.700e-847.62dynein heavy chain 1, axonemal-like n=1 Tax=Priapu... [more]
A0A1Y2CPT9_9FUNG1.720e-850.00Uncharacterized protein n=1 Tax=Rhizoclosmatium gl... [more]
A0A507FTQ8_9FUNG4.390e-847.22Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
UPI000D1C37146.000e-847.14uncharacterized protein LOC112343694 isoform X1 n=... [more]
A0A0G4F7Q5_VITBC8.190e-850.00Uncharacterized protein n=5 Tax=Vitrella brassicaf... [more]
A0A139AYH6_GONPJ1.120e-765.79Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A0A7M5V6N1_9CNID1.530e-743.68Uncharacterized protein n=2 Tax=Clytia hemisphaeri... [more]
UPI001C05757F2.090e-737.65dynein heavy chain 1, axonemal isoform X1 n=5 Tax=... [more]
A0A5B8MFC9_9CHLO2.090e-743.48Heavy chain of dynein n=2 Tax=Chloropicon primus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73183contigM-pyrifera_M_contig73183:881..1108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog529818.AMSG_01490T0
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons1
Model size228
Cds size210
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816628.9936-UTR-M-pyrifera_M_contig73183:880..8981622816628.9936-UTR-M-pyrifera_M_contig73183:880..898Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73183 881..898 +
1692278086.5962393-UTR-M-pyrifera_M_contig73183:880..8981692278086.5962393-UTR-M-pyrifera_M_contig73183:880..898Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73183 881..898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816629.0043757-CDS-M-pyrifera_M_contig73183:898..11081622816629.0043757-CDS-M-pyrifera_M_contig73183:898..1108Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73183 899..1108 +
1692278086.610916-CDS-M-pyrifera_M_contig73183:898..11081692278086.610916-CDS-M-pyrifera_M_contig73183:898..1108Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73183 899..1108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73183.17364.1prot_M-pyrifera_M_contig73183.17364.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73183 899..1108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73183.17364.1

>prot_M-pyrifera_M_contig73183.17364.1 ID=prot_M-pyrifera_M_contig73183.17364.1|Name=mRNA_M-pyrifera_M_contig73183.17364.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MLPYKTRPGKTPRRIEVERRKRLYARQDIADLLAKRNVQLLTLAVEWRTD
AGTLPLEPFDDSSVDEHDPE
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mRNA from alignment at M-pyrifera_M_contig73183:881..1108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73183.17364.1 ID=mRNA_M-pyrifera_M_contig73183.17364.1|Name=mRNA_M-pyrifera_M_contig73183.17364.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig73183:881..1108+ (Macrocystis pyrifera P11B4 male)
GCGTTGCAGCCAAAGGTCATGCTCCCCTACAAGACCAGACCGGGGAAGAC GCCCAGGCGTATCGAGGTGGAAAGGCGGAAGAGGCTGTACGCGCGGCAGG ACATTGCAGACCTGCTTGCCAAGCGCAACGTACAGTTGCTCACTCTGGCA GTTGAATGGCGGACCGACGCCGGCACGCTGCCGCTGGAGCCGTTTGATGA TAGCAGTGTTGATGAGCATGACCCGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73183:881..1108+

>mRNA_M-pyrifera_M_contig73183.17364.1 ID=mRNA_M-pyrifera_M_contig73183.17364.1|Name=mRNA_M-pyrifera_M_contig73183.17364.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig73183:881..1108+ (Macrocystis pyrifera P11B4 male)
ATGCTCCCCTACAAGACCAGACCGGGGAAGACGCCCAGGCGTATCGAGGT
GGAAAGGCGGAAGAGGCTGTACGCGCGGCAGGACATTGCAGACCTGCTTG
CCAAGCGCAACGTACAGTTGCTCACTCTGGCAGTTGAATGGCGGACCGAC
GCCGGCACGCTGCCGCTGGAGCCGTTTGATGATAGCAGTGTTGATGAGCA
TGACCCGGAGATGCTCCCCTACAAGACCAGACCGGGGAAGACGCCCAGGC
GTATCGAGGTGGAAAGGCGGAAGAGGCTGTACGCGCGGCAGGACATTGCA
GACCTGCTTGCCAAGCGCAACGTACAGTTGCTCACTCTGGCAGTTGAATG
GCGGACCGACGCCGGCACGCTGCCGCTGGAGCCGTTTGATGATAGCAGTG
TTGATGAGCATGACCCGGAG
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