mRNA_M-pyrifera_M_contig72915.17320.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72915.17320.1
Unique NamemRNA_M-pyrifera_M_contig72915.17320.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72915.17320.1 vs. uniprot
Match: A0A2E7KFM3_9PLAN (Uncharacterized protein n=10 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFM3_9PLAN)

HSP 1 Score: 285 bits (729), Expect = 8.580e-93
Identity = 178/184 (96.74%), Postives = 180/184 (97.83%), Query Frame = 1 
Query:    1 AEAEEQLAAASAXXXXXXXXXXXXXXXXXTPSLDKPTQLASLKASADTRAQQRETLAPSKPAPEKTKLISQVSLKEEMESAAPVKVQPFRKIPDNPAPVKTATRTVSVQSKPVVTRTIPQPKVETKPEPQREEAPLEINPFRSLDEIEEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP 552
            AEAEEQLAAAS XXXXXXXXXXXXXXX  T +LDKPTQLASLKASADTRAQQRETLAPSKPAPEKTKLISQVSLK+EMESAAPVKVQPFRKIPDNPAPVKTATRTVSVQSKPVVTRTIPQPKVETKPEPQREEAPLEINPFRSLDEIEEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP
Sbjct:  230 AEAEEQLAAASXXXXXXXXXXXXXXXXQKTRALDKPTQLASLKASADTRAQQRETLAPSKPAPEKTKLISQVSLKKEMESAAPVKVQPFRKIPDNPAPVKTATRTVSVQSKPVVTRTIPQPKVETKPEPQREEAPLEINPFRSLDEIEEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP 413
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BLAST of mRNA_M-pyrifera_M_contig72915.17320.1 vs. uniprot
Match: A0A518A4U4_9PLAN (Photosystem I assembly protein Ycf3 n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A4U4_9PLAN)

HSP 1 Score: 144 bits (363), Expect = 3.650e-38
Identity = 117/191 (61.26%), Postives = 127/191 (66.49%), Query Frame = 1 
Query:    1 AEAEEQLAAASAXXXXXXXXXXXXXXXXXTPSLDKPTQLASLKASADTRAQQRETLAPSKPAPEKTKLISQVSLKEEMESAAPVKVQPFRKIPDNPAPVKTATRT-------VSVQSKPVVTRTIPQPKVETKPEPQREEAPLEINPFRSLDEIEEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP 552
            AEAEEQLAAAS  XXXXXXXXXXXX      +  +P QL SLKASADTR QQ E+L   KPA +K KLISQVSLK+EM+S APVKV PFR IPD+PAP  T TR           Q KPVV         E KPE    EAPLEIN FR LDE+EEE PVIIRISNEVPA       EE LFR+P EL+ P
Sbjct:  231 AEAEEQLAAASKEXXXXXXXXXXXX------TQKQPAQLVSLKASADTRTQQLESLTQQKPAVKKEKLISQVSLKKEMKSTAPVKVNPFRNIPDDPAPATTTTRKKPQPAXXXXXQQKPVV---------EQKPE----EAPLEINSFRELDELEEEKPVIIRISNEVPA---AVEKEETLFRSPQELSNP 399
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BLAST of mRNA_M-pyrifera_M_contig72915.17320.1 vs. uniprot
Match: A0A355GHA8_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GHA8_9PLAN)

HSP 1 Score: 56.6 bits (135), Expect = 3.640e-6
Identity = 53/130 (40.77%), Postives = 66/130 (50.77%), Query Frame = 1 
Query:  172 PSKPAPEKTKLISQVSLKEEMESAAPVKVQPFRKIPDNPAPVKTATRTVSVQSKPVVTRTIPQPKVETKPEPQREE--APLEINPFRSLDEI-EEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP 552
            PS  AP K K+++Q  LK+E+   AP +V P + +P N                            E   E Q EE   PLEIN FR+LDEI +EE P IIRI +E PA       EEPLFRAP EL++P
Sbjct:  303 PSLNAPVK-KMVTQADLKKEL--LAPTQVAPAQSVPVNSN--------------------------ELSAEQQEEEFLEPLEINSFRTLDEISQEEEPAIIRIGHETPA-------EEPLFRAPAELSRP 396
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BLAST of mRNA_M-pyrifera_M_contig72915.17320.1 vs. uniprot
Match: A6CDP8_9PLAN (TPR repeat n=7 Tax=Planctomycetaceae TaxID=126 RepID=A6CDP8_9PLAN)

HSP 1 Score: 56.2 bits (134), Expect = 4.870e-6
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:  349 TIPQPKVETKPEPQREE--APLEINPFRSLDEI------EEEAPVIIRISNEVPAQDKTAASEEPLFRAPGELAQP 552
            T P  ++E + + Q EE   PLEIN FRSLDEI      +E+ P IIRISNE+PA       EEP+FR+P EL  P
Sbjct:  316 TTPAARIEPQVQKQEEEFLEPLEINSFRSLDEITDDEITDEDTPAIIRISNEIPA-------EEPMFRSPDELTGP 384
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72915.17320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7KFM3_9PLAN8.580e-9396.74Uncharacterized protein n=10 Tax=Gimesia TaxID=164... [more]
A0A518A4U4_9PLAN3.650e-3861.26Photosystem I assembly protein Ycf3 n=3 Tax=Gimesi... [more]
A0A355GHA8_9PLAN3.640e-640.77Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A6CDP8_9PLAN4.870e-650.00TPR repeat n=7 Tax=Planctomycetaceae TaxID=126 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72915contigM-pyrifera_M_contig72915:561..1115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.7
Seed ortholog evalue5.2e-08
Seed eggNOG ortholog344747.PM8797T_01304
Hectar predicted targeting categoryother localisation
EggNOG free text desc.repeat protein
EggNOG OGs2J0WF@203682,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size555
Cds size555
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.461996-CDS-M-pyrifera_M_contig72915:560..11151622816626.461996-CDS-M-pyrifera_M_contig72915:560..1115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72915 561..1115 -
1692278085.0217798-CDS-M-pyrifera_M_contig72915:560..11151692278085.0217798-CDS-M-pyrifera_M_contig72915:560..1115Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72915 561..1115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72915.17320.1prot_M-pyrifera_M_contig72915.17320.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72915 561..1115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72915.17320.1

>prot_M-pyrifera_M_contig72915.17320.1 ID=prot_M-pyrifera_M_contig72915.17320.1|Name=mRNA_M-pyrifera_M_contig72915.17320.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
AEAEEQLAAASAEKQTQPQTSAKATAPQKTPSLDKPTQLASLKASADTRA
QQRETLAPSKPAPEKTKLISQVSLKEEMESAAPVKVQPFRKIPDNPAPVK
TATRTVSVQSKPVVTRTIPQPKVETKPEPQREEAPLEINPFRSLDEIEEE
APVIIRISNEVPAQDKTAASEEPLFRAPGELAQP*
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mRNA from alignment at M-pyrifera_M_contig72915:561..1115-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72915.17320.1 ID=mRNA_M-pyrifera_M_contig72915.17320.1|Name=mRNA_M-pyrifera_M_contig72915.17320.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig72915:561..1115- (Macrocystis pyrifera P11B4 male)
GCAGAAGCGGAAGAGCAACTGGCAGCAGCGTCTGCTGAAAAACAGACACA
GCCCCAGACCAGTGCGAAAGCAACTGCACCGCAGAAGACCCCGTCACTGG
ATAAACCCACACAACTGGCCAGCCTGAAAGCTTCTGCAGACACCCGCGCT
CAACAACGCGAAACACTGGCACCAAGCAAACCAGCCCCTGAGAAAACCAA
GCTGATCAGCCAGGTCTCACTGAAGGAAGAAATGGAATCGGCAGCGCCGG
TTAAAGTACAACCCTTCCGGAAAATCCCTGATAATCCGGCACCGGTTAAA
ACCGCTACCCGAACGGTATCTGTTCAATCCAAACCCGTTGTAACCCGGAC
CATCCCTCAGCCCAAAGTGGAAACGAAACCTGAACCACAACGGGAAGAGG
CTCCTCTGGAAATCAACCCCTTCCGATCACTCGATGAAATCGAAGAGGAA
GCACCGGTTATCATTCGTATTTCGAATGAAGTACCTGCCCAGGATAAGAC
TGCTGCTTCGGAAGAACCCCTGTTTCGTGCACCGGGTGAACTCGCACAGC
CATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72915:561..1115-

>mRNA_M-pyrifera_M_contig72915.17320.1 ID=mRNA_M-pyrifera_M_contig72915.17320.1|Name=mRNA_M-pyrifera_M_contig72915.17320.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig72915:561..1115- (Macrocystis pyrifera P11B4 male)
GCAGAAGCGGAAGAGCAACTGGCAGCAGCGTCTGCTGAAAAACAGACACA
GCCCCAGACCAGTGCGAAAGCAACTGCACCGCAGAAGACCCCGTCACTGG
ATAAACCCACACAACTGGCCAGCCTGAAAGCTTCTGCAGACACCCGCGCT
CAACAACGCGAAACACTGGCACCAAGCAAACCAGCCCCTGAGAAAACCAA
GCTGATCAGCCAGGTCTCACTGAAGGAAGAAATGGAATCGGCAGCGCCGG
TTAAAGTACAACCCTTCCGGAAAATCCCTGATAATCCGGCACCGGTTAAA
ACCGCTACCCGAACGGTATCTGTTCAATCCAAACCCGTTGTAACCCGGAC
CATCCCTCAGCCCAAAGTGGAAACGAAACCTGAACCACAACGGGAAGAGG
CTCCTCTGGAAATCAACCCCTTCCGATCACTCGATGAAATCGAAGAGGAA
GCACCGGTTATCATTCGTATTTCGAATGAAGTACCTGCCCAGGATAAGAC
TGCTGCTTCGGAAGAACCCCTGTTTCGTGCACCGGGTGAACTCGCACAGC
CATAAGCAGAAGCGGAAGAGCAACTGGCAGCAGCGTCTGCTGAAAAACAG
ACACAGCCCCAGACCAGTGCGAAAGCAACTGCACCGCAGAAGACCCCGTC
ACTGGATAAACCCACACAACTGGCCAGCCTGAAAGCTTCTGCAGACACCC
GCGCTCAACAACGCGAAACACTGGCACCAAGCAAACCAGCCCCTGAGAAA
ACCAAGCTGATCAGCCAGGTCTCACTGAAGGAAGAAATGGAATCGGCAGC
GCCGGTTAAAGTACAACCCTTCCGGAAAATCCCTGATAATCCGGCACCGG
TTAAAACCGCTACCCGAACGGTATCTGTTCAATCCAAACCCGTTGTAACC
CGGACCATCCCTCAGCCCAAAGTGGAAACGAAACCTGAACCACAACGGGA
AGAGGCTCCTCTGGAAATCAACCCCTTCCGATCACTCGATGAAATCGAAG
AGGAAGCACCGGTTATCATTCGTATTTCGAATGAAGTACCTGCCCAGGAT
AAGACTGCTGCTTCGGAAGAACCCCTGTTTCGTGCACCGGGTGAACTCGC
ACAGCCATAA
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