|
Homology
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A0U2H196_HUMLU (Cytochrome b6-f complex subunit 4 n=12 Tax=Pentapetalae TaxID=1437201 RepID=A0A0U2H196_HUMLU) HSP 1 Score: 286 bits (732), Expect = 2.080e-97 Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 1 Query: 1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
MSGSFGGW+ NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct: 1 MSGSFGGWIENNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A7M1VHI7_9LAMI (Cytochrome b6-f complex subunit 4 n=7 Tax=asterids TaxID=71274 RepID=A0A7M1VHI7_9LAMI) HSP 1 Score: 283 bits (723), Expect = 4.890e-96 Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 1 Query: 1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
MSGSFGGWM NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct: 1 MSGSFGGWMYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A1X9ZF72_PISVE (Cytochrome b6-f complex subunit 4 n=80 Tax=Pentapetalae TaxID=1437201 RepID=A0A1X9ZF72_PISVE) HSP 1 Score: 281 bits (720), Expect = 1.400e-95 Identity = 136/141 (96.45%), Postives = 138/141 (97.87%), Query Frame = 1 Query: 1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
MSGS+GGW+ NNSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct: 1 MSGSWGGWIYNNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A291LRE0_9ROSI (Cytochrome b6-f complex subunit 4 n=15 Tax=Mesangiospermae TaxID=1437183 RepID=A0A291LRE0_9ROSI) HSP 1 Score: 281 bits (720), Expect = 1.780e-95 Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 1 Query: 1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
MSGSFGGW+ NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct: 1 MSGSFGGWIYKNSPIQITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A4P8KZ66_PHAVU (Cytochrome b6-f complex subunit 4 n=145 Tax=Mesangiospermae TaxID=1437183 RepID=A0A4P8KZ66_PHAVU) HSP 1 Score: 281 bits (719), Expect = 1.990e-95 Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 1 Query: 1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
MSGSFGGW+ NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct: 1 MSGSFGGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A0D3LSI5_LONJA (Cytochrome b6-f complex subunit 4 n=6 Tax=Pentapetalae TaxID=1437201 RepID=A0A0D3LSI5_LONJA) HSP 1 Score: 281 bits (719), Expect = 1.990e-95 Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 1 Query: 1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
MSGSFGGW+ NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct: 1 MSGSFGGWIYQNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 141
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A191TFF4_9ERIC (Cytochrome b6-f complex subunit 4 n=192 Tax=Pentapetalae TaxID=1437201 RepID=A0A191TFF4_9ERIC) HSP 1 Score: 281 bits (719), Expect = 2.210e-95 Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 1 Query: 1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
MSGSFGGW+ NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct: 4 MSGSFGGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 144
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A3G2Z484_ENSLA (Cytochrome b6-f complex subunit 4 n=3 Tax=Petrosaviidae TaxID=1437197 RepID=A0A3G2Z484_ENSLA) HSP 1 Score: 280 bits (715), Expect = 8.110e-95 Identity = 134/141 (95.04%), Postives = 136/141 (96.45%), Query Frame = 1 Query: 1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
MSGSFGGW+ NSPI ITKKPDLNDP+LRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVP GLLTVPFL NVNKFQNPFRRP
Sbjct: 1 MSGSFGGWIHKNSPIQITKKPDLNDPILRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRP 141
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A3G2Z3H9_9LILI (Cytochrome b6-f complex subunit 4 n=7 Tax=Mesangiospermae TaxID=1437183 RepID=A0A3G2Z3H9_9LILI) HSP 1 Score: 280 bits (715), Expect = 8.110e-95 Identity = 135/141 (95.74%), Postives = 136/141 (96.45%), Query Frame = 1 Query: 1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
MSGSFGGW+ NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVP GLLTVPFL NVNKFQNPFRRP
Sbjct: 1 MSGSFGGWIHKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRP 141
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Match: A0A385CI56_9FABA (Cytochrome b6-f complex subunit 4 n=1 Tax=Ormosia hosiei TaxID=1642859 RepID=A0A385CI56_9FABA) HSP 1 Score: 280 bits (715), Expect = 8.690e-95 Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 1 Query: 1 MSGSFGGWM*NNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQNPFRRP 423
+SGSFGGW+ NSPI ITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFL NVNKFQNPFRRP
Sbjct: 3 VSGSFGGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRP 143
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72905.17315.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Pagesback to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Viridiplantae |
Seed ortholog score | 219.5 |
Seed ortholog evalue | 7.2e-55 |
Seed eggNOG ortholog | 3702.ATCG00730.1 |
Preferred name | petD |
KEGG ko | ko:K02637 |
KEGG Pathway | ko00195,ko01100,map00195,map01100 |
KEGG Module | M00162 |
Hectar predicted targeting category | other localisation |
GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035 |
EggNOG free text desc. | Cytochrome b6-f complex subunit 4 |
EggNOG OGs | 37NKU@33090,3G85T@35493,COG1290@1,KOG4663@2759 |
COG Functional cat. | C |
Best tax level | Streptophyta |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko00002,ko00194 |
Exons | 1 |
Model size | 423 |
Cds size | 318 |
Stop | 0 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816626.280279-UTR-M-pyrifera_M_contig72905:691..796 | 1622816626.280279-UTR-M-pyrifera_M_contig72905:691..796 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig72905 692..796 + |
1692278084.9304042-UTR-M-pyrifera_M_contig72905:691..796 | 1692278084.9304042-UTR-M-pyrifera_M_contig72905:691..796 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig72905 692..796 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816626.2947814-CDS-M-pyrifera_M_contig72905:796..1114 | 1622816626.2947814-CDS-M-pyrifera_M_contig72905:796..1114 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig72905 797..1114 + |
1692278084.9442127-CDS-M-pyrifera_M_contig72905:796..1114 | 1692278084.9442127-CDS-M-pyrifera_M_contig72905:796..1114 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig72905 797..1114 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig72905.17315.1 >prot_M-pyrifera_M_contig72905.17315.1 ID=prot_M-pyrifera_M_contig72905.17315.1|Name=mRNA_M-pyrifera_M_contig72905.17315.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFAT PLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLVNVNKFQ NPFRRP back to topmRNA from alignment at M-pyrifera_M_contig72905:692..1114+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig72905.17315.1 ID=mRNA_M-pyrifera_M_contig72905.17315.1|Name=mRNA_M-pyrifera_M_contig72905.17315.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig72905:692..1114+ (Macrocystis pyrifera P11B4 male) ATGTCCGGTTCTTTCGGGGGATGGATGTAAAATAATTCACCTATCCTAAT
AACAAAAAAACCTGACTTGAATGATCCTGTGTTAAGAGCTAAATTGGCTA
AAGGGATGGGTCATAATTATTACGGAGAGCCCGCATGGCCAAACGATCTT
TTATATATTTTTCCAGTAGTAATTTTAGGTACTATTGCATGTAACGTAGG
CTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCCGCGGATCCGTTTG
CAACTCCTTTGGAAATATTGCCTGAGTGGTATTTCTTTCCCGTATTTCAA
ATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTC
AGTACCTGCGGGATTATTAACAGTACCCTTTTTGGTGAATGTTAATAAAT
TCCAAAATCCATTTCGTCGTCCC back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig72905:692..1114+ >mRNA_M-pyrifera_M_contig72905.17315.1 ID=mRNA_M-pyrifera_M_contig72905.17315.1|Name=mRNA_M-pyrifera_M_contig72905.17315.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig72905:692..1114+ (Macrocystis pyrifera P11B4 male) ATGGGTCATAATTATTACGGAGAGCCCGCATGGCCAAACGATCTTTTATA TATTTTTCCAGTAGTAATTTTAGGTACTATTGCATGTAACGTAGGCTTAG CGGTTCTAGAACCATCAATGATTGGTGAACCCGCGGATCCGTTTGCAACT CCTTTGGAAATATTGCCTGAGTGGTATTTCTTTCCCGTATTTCAAATACT TCGTACAGTGCCAAATAAGTTATTGGGTGTTCTTTTAATGGTTTCAGTAC CTGCGGGATTATTAACAGTACCCTTTTTGGTGAATGTTAATAAATTCCAA AATCCATTTCGTCGTCCCATGGGTCATAATTATTACGGAGAGCCCGCATG GCCAAACGATCTTTTATATATTTTTCCAGTAGTAATTTTAGGTACTATTG CATGTAACGTAGGCTTAGCGGTTCTAGAACCATCAATGATTGGTGAACCC GCGGATCCGTTTGCAACTCCTTTGGAAATATTGCCTGAGTGGTATTTCTT TCCCGTATTTCAAATACTTCGTACAGTGCCAAATAAGTTATTGGGTGTTC TTTTAATGGTTTCAGTACCTGCGGGATTATTAACAGTACCCTTTTTGGTG AATGTTAATAAATTCCAAAATCCATTTCGTCGTCCC back to top
|