mRNA_M-pyrifera_M_contig72794.17291.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72794.17291.1
Unique NamemRNA_M-pyrifera_M_contig72794.17291.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72794.17291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72794contigM-pyrifera_M_contig72794:13..819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size807
Cds size807
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.0694647-CDS-M-pyrifera_M_contig72794:12..8191622816625.0694647-CDS-M-pyrifera_M_contig72794:12..819Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72794 13..819 -
1692278084.2882643-CDS-M-pyrifera_M_contig72794:12..8191692278084.2882643-CDS-M-pyrifera_M_contig72794:12..819Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72794 13..819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72794.17291.1prot_M-pyrifera_M_contig72794.17291.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72794 13..819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72794.17291.1

>prot_M-pyrifera_M_contig72794.17291.1 ID=prot_M-pyrifera_M_contig72794.17291.1|Name=mRNA_M-pyrifera_M_contig72794.17291.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=269bp
MFLTNKTQPFGALLGDCFRSFRPLLWKTLPIFVAGFILYGLYLLLAKITY
GNALFTATKETGSVSISGWSVFLFIVPILVAKIYFLTTIFRRADGVLSND
VSKIKSAWSAGWRRFFPLIGIGIICALIISPIVVVGGFLTAGILMLSKWV
GALLGIAINVGIFCIAVRFYYAIPLITRRGHGVFQSFRESWRLTRGYVWR
LIGMNSVVFVAPCLLFTGISFLLAFILPAGTILTVLSTIVGVVQFIMMPI
LSIGAAYVFLNNSMLFHNE
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mRNA from alignment at M-pyrifera_M_contig72794:13..819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72794.17291.1 ID=mRNA_M-pyrifera_M_contig72794.17291.1|Name=mRNA_M-pyrifera_M_contig72794.17291.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=807bp|location=Sequence derived from alignment at M-pyrifera_M_contig72794:13..819- (Macrocystis pyrifera P11B4 male)
ATGTTTTTAACTAACAAAACCCAACCTTTCGGAGCGCTACTGGGCGATTG
TTTTCGCTCTTTTCGTCCATTGCTGTGGAAGACCCTGCCTATCTTTGTTG
CCGGTTTTATTCTTTACGGCTTGTACTTGTTGCTCGCAAAAATTACGTAC
GGCAATGCTTTATTTACTGCGACGAAAGAAACGGGCTCGGTCAGCATCAG
CGGCTGGTCAGTCTTCTTATTCATTGTTCCCATACTTGTCGCTAAAATCT
ACTTCTTAACTACCATCTTTCGTCGTGCCGACGGAGTACTCAGTAACGAC
GTAAGCAAAATTAAAAGTGCATGGTCTGCTGGCTGGAGACGCTTCTTTCC
CTTGATTGGTATCGGGATCATTTGTGCGCTAATTATCAGTCCAATTGTTG
TGGTTGGTGGTTTTCTTACTGCAGGAATTTTAATGCTAAGTAAGTGGGTC
GGCGCTTTATTGGGAATAGCCATCAATGTCGGGATATTCTGTATCGCCGT
GCGCTTTTACTACGCGATCCCACTCATTACTCGCCGTGGACATGGAGTGT
TTCAATCATTTCGCGAAAGCTGGCGCTTAACTCGCGGCTACGTTTGGCGT
TTGATTGGTATGAATTCTGTTGTCTTTGTTGCACCGTGCCTGCTATTCAC
CGGTATTAGCTTCTTGCTGGCATTCATATTACCTGCAGGCACCATATTAA
CAGTTCTTTCTACAATAGTAGGTGTCGTGCAATTCATTATGATGCCCATA
CTCAGTATCGGTGCAGCCTATGTCTTCTTAAACAACAGCATGCTTTTTCA
TAATGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72794:13..819-

>mRNA_M-pyrifera_M_contig72794.17291.1 ID=mRNA_M-pyrifera_M_contig72794.17291.1|Name=mRNA_M-pyrifera_M_contig72794.17291.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1614bp|location=Sequence derived from alignment at M-pyrifera_M_contig72794:13..819- (Macrocystis pyrifera P11B4 male)
ATGTTTTTAACTAACAAAACCCAACCTTTCGGAGCGCTACTGGGCGATTG
TTTTCGCTCTTTTCGTCCATTGCTGTGGAAGACCCTGCCTATCTTTGTTG
CCGGTTTTATTCTTTACGGCTTGTACTTGTTGCTCGCAAAAATTACGTAC
GGCAATGCTTTATTTACTGCGACGAAAGAAACGGGCTCGGTCAGCATCAG
CGGCTGGTCAGTCTTCTTATTCATTGTTCCCATACTTGTCGCTAAAATCT
ACTTCTTAACTACCATCTTTCGTCGTGCCGACGGAGTACTCAGTAACGAC
GTAAGCAAAATTAAAAGTGCATGGTCTGCTGGCTGGAGACGCTTCTTTCC
CTTGATTGGTATCGGGATCATTTGTGCGCTAATTATCAGTCCAATTGTTG
TGGTTGGTGGTTTTCTTACTGCAGGAATTTTAATGCTAAGTAAGTGGGTC
GGCGCTTTATTGGGAATAGCCATCAATGTCGGGATATTCTGTATCGCCGT
GCGCTTTTACTACGCGATCCCACTCATTACTCGCCGTGGACATGGAGTGT
TTCAATCATTTCGCGAAAGCTGGCGCTTAACTCGCGGCTACGTTTGGCGT
TTGATTGGTATGAATTCTGTTGTCTTTGTTGCACCGTGCCTGCTATTCAC
CGGTATTAGCTTCTTGCTGGCATTCATATTACCTGCAGGCACCATATTAA
CAGTTCTTTCTACAATAGTAGGTGTCGTGCAATTCATTATGATGCCCATA
CTCAGTATCGGTGCAGCCTATGTCTTCTTAAACAACAGCATGCTTTTTCA
TAATGAAATGTTTTTAACTAACAAAACCCAACCTTTCGGAGCGCTACTGG
GCGATTGTTTTCGCTCTTTTCGTCCATTGCTGTGGAAGACCCTGCCTATC
TTTGTTGCCGGTTTTATTCTTTACGGCTTGTACTTGTTGCTCGCAAAAAT
TACGTACGGCAATGCTTTATTTACTGCGACGAAAGAAACGGGCTCGGTCA
GCATCAGCGGCTGGTCAGTCTTCTTATTCATTGTTCCCATACTTGTCGCT
AAAATCTACTTCTTAACTACCATCTTTCGTCGTGCCGACGGAGTACTCAG
TAACGACGTAAGCAAAATTAAAAGTGCATGGTCTGCTGGCTGGAGACGCT
TCTTTCCCTTGATTGGTATCGGGATCATTTGTGCGCTAATTATCAGTCCA
ATTGTTGTGGTTGGTGGTTTTCTTACTGCAGGAATTTTAATGCTAAGTAA
GTGGGTCGGCGCTTTATTGGGAATAGCCATCAATGTCGGGATATTCTGTA
TCGCCGTGCGCTTTTACTACGCGATCCCACTCATTACTCGCCGTGGACAT
GGAGTGTTTCAATCATTTCGCGAAAGCTGGCGCTTAACTCGCGGCTACGT
TTGGCGTTTGATTGGTATGAATTCTGTTGTCTTTGTTGCACCGTGCCTGC
TATTCACCGGTATTAGCTTCTTGCTGGCATTCATATTACCTGCAGGCACC
ATATTAACAGTTCTTTCTACAATAGTAGGTGTCGTGCAATTCATTATGAT
GCCCATACTCAGTATCGGTGCAGCCTATGTCTTCTTAAACAACAGCATGC
TTTTTCATAATGAA
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