mRNA_M-pyrifera_M_contig72762.17283.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72762.17283.1
Unique NamemRNA_M-pyrifera_M_contig72762.17283.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72762.17283.1 vs. uniprot
Match: UPI001CD83A5E (NUDIX domain-containing protein n=1 Tax=Novosphingobium sp. c7 TaxID=2866625 RepID=UPI001CD83A5E)

HSP 1 Score: 52.0 bits (123), Expect = 7.620e-5
Identity = 55/156 (35.26%), Postives = 70/156 (44.87%), Query Frame = 1 
Query:   49 ARVAAVRELLEEAGLAFPVADEVWGDGVLKRARKHV-LGRGGDVVKAMEELFPDDATGYLAKQANSLLPWSRFLAPRFEILQFDAISYLALPKATDEELDLEHPAEDHEEAAALGWLHPSEALLMHSDGRIHLPPPQYMLCREMEER---FPTFES 504
            ARVAAVRE LEE GLA  +A +V   G  +  R  +  GR GD +         DA G+ A   + L+PW+R+      I  FD   YLA       E+     A D  E   L W    EAL +  +G I +  P     R   ER   +P FES
Sbjct:   82 ARVAAVREALEETGLAVGIAGDVSAQGAAEARRIAISTGRLGDAL---------DAMGW-ALDLDRLVPWARWWPRHRHIRVFDTRFYLADLGTGAVEI-----AVDATENRHLFWASAHEALRLADEGAIKVIFP----TRRNLERLAVYPDFES 218
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72762.17283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001CD83A5E7.620e-535.26NUDIX domain-containing protein n=1 Tax=Novosphing... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72762contigM-pyrifera_M_contig72762:472..1041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog529818.AMSG_07864T0
Preferred nameNUDT19
KEGG koko:K11650,ko:K13355
KEGG Pathwayko04146,ko04714,ko05225,map04146,map04714,map05225
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006810,GO:0006886,GO:0006897,GO:0006909,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0016042,GO:0016043,GO:0016054,GO:0016192,GO:0016289,GO:0016787,GO:0016788,GO:0016790,GO:0019752,GO:0031907,GO:0031974,GO:0032787,GO:0033036,GO:0033365,GO:0034613,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046395,GO:0046907,GO:0047617,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098657,GO:1901575
EggNOG free text desc.Nucleoside diphosphate-linked moiety X motif 19
EggNOG OGsCOG0494@1,KOG3904@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03036
Exons2
Model size507
Cds size507
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.6099095-CDS-M-pyrifera_M_contig72762:471..6361622816624.6099095-CDS-M-pyrifera_M_contig72762:471..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72762 472..636 -
1692278084.013705-CDS-M-pyrifera_M_contig72762:471..6361692278084.013705-CDS-M-pyrifera_M_contig72762:471..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72762 472..636 -
1622816624.6214309-CDS-M-pyrifera_M_contig72762:699..10411622816624.6214309-CDS-M-pyrifera_M_contig72762:699..1041Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72762 700..1041 -
1692278084.0275042-CDS-M-pyrifera_M_contig72762:699..10411692278084.0275042-CDS-M-pyrifera_M_contig72762:699..1041Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72762 700..1041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72762.17283.1prot_M-pyrifera_M_contig72762.17283.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72762 472..1041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72762.17283.1

>prot_M-pyrifera_M_contig72762.17283.1 ID=prot_M-pyrifera_M_contig72762.17283.1|Name=mRNA_M-pyrifera_M_contig72762.17283.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
MDESDVSLGGGSLERGARVAAVRELLEEAGLAFPVADEVWGDGVLKRARK
HVLGRGGDVVKAMEELFPDDATGYLAKQANSLLPWSRFLAPRFEILQFDA
ISYLALPKATDEELDLEHPAEDHEEAAALGWLHPSEALLMHSDGRIHLPP
PQYMLCREMEERFPTFESL
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mRNA from alignment at M-pyrifera_M_contig72762:472..1041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72762.17283.1 ID=mRNA_M-pyrifera_M_contig72762.17283.1|Name=mRNA_M-pyrifera_M_contig72762.17283.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig72762:472..1041- (Macrocystis pyrifera P11B4 male)
ATGGATGAGAGCGATGTTTCTTTGGGTGGTGGGTCCTTGGAGCGTGGTGC
ACGTGTAGCAGCCGTGCGTGAATTATTGGAGGAGGCTGGATTGGCTTTTC
CTGTTGCTGATGAAGTATGGGGAGATGGGGTGTTGAAGAGAGCAAGAAAA
CACGTATTGGGTCGTGGCGGAGATGTCGTGAAAGCAATGGAAGAGTTATT
TCCAGACGATGCAACAGGTTATTTAGCGAAACAGGCGAATTCTCTCTTGC
CATGGTCTCGATTTCTTGCTCCTCGGTTTGAAATTTTGCAGTTTGATGCC
ATTTCATACCTAGCATTACCCAAGGCAACAGATGAAGAGCTCGTTGGGCT
CATGCGATCAAGTGGTGCTGCTTGTGTTGGTGTGGGGATGGATGCACTTG
AAGAGGACTTGGAGCATCCTGCGGAAGATCATGAAGAAGCTGCAGCATTA
GGTTGGTTGCATCCAAGTGAAGCACTGTTGATGCATTCTGATGGAAGAAT
CCACCTTCCTCCACCACAATATATGCTATGCCGTGAGATGGAAGAACGAT
TTCCAACGTTTGAATCTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72762:472..1041-

>mRNA_M-pyrifera_M_contig72762.17283.1 ID=mRNA_M-pyrifera_M_contig72762.17283.1|Name=mRNA_M-pyrifera_M_contig72762.17283.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig72762:472..1041- (Macrocystis pyrifera P11B4 male)
ATGGATGAGAGCGATGTTTCTTTGGGTGGTGGGTCCTTGGAGCGTGGTGC
ACGTGTAGCAGCCGTGCGTGAATTATTGGAGGAGGCTGGATTGGCTTTTC
CTGTTGCTGATGAAGTATGGGGAGATGGGGTGTTGAAGAGAGCAAGAAAA
CACGTATTGGGTCGTGGCGGAGATGTCGTGAAAGCAATGGAAGAGTTATT
TCCAGACGATGCAACAGGTTATTTAGCGAAACAGGCGAATTCTCTCTTGC
CATGGTCTCGATTTCTTGCTCCTCGGTTTGAAATTTTGCAGTTTGATGCC
ATTTCATACCTAGCATTACCCAAGGCAACAGATGAAGAGCTCATGGATGA
GAGCGATGTTTCTTTGGGTGGTGGGTCCTTGGAGCGTGGTGCACGTGTAG
CAGCCGTGCGTGAATTATTGGAGGAGGCTGGATTGGCTTTTCCTGTTGCT
GATGAAGTATGGGGAGATGGGGTGTTGAAGAGAGCAAGAAAACACGTATT
GGGTCGTGGCGGAGATGTCGTGAAAGCAATGGAAGAGTTATTTCCAGACG
ATGCAACAGGTTATTTAGCGAAACAGGCGAATTCTCTCTTGCCATGGTCT
CGATTTCTTGCTCCTCGGTTTGAAATTTTGCAGTTTGATGCCATTTCATA
CCTAGCATTACCCAAGGCAACAGATGAAGAGCTCGACTTGGAGCATCCTG
CGGAAGATCATGAAGAAGCTGCAGCATTAGGTTGGTTGCATCCAAGTGAA
GCACTGTTGATGCATTCTGATGGAAGAATCCACCTTCCTCCACCACAATA
TATGCTATGCCGTGAGATGGAAGAACGATTTCCAACGTTTGAATCTCTCG
ACTTGGAGCATCCTGCGGAAGATCATGAAGAAGCTGCAGCATTAGGTTGG
TTGCATCCAAGTGAAGCACTGTTGATGCATTCTGATGGAAGAATCCACCT
TCCTCCACCACAATATATGCTATGCCGTGAGATGGAAGAACGATTTCCAA
CGTTTGAATCTCTC
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