prot_M-pyrifera_M_contig72699.17266.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig72699.17266.1
Unique Nameprot_M-pyrifera_M_contig72699.17266.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length70
Homology
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BLAST of mRNA_M-pyrifera_M_contig72699.17266.1 vs. uniprot
Match: D7G3N4_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3N4_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.030e-27
Identity = 53/69 (76.81%), Postives = 57/69 (82.61%), Query Frame = 0 
Query:    1 MGYLMSWGMLGRLSTPILCGASVILMLQHSKGWARNMPDFSLLLQGWAGGDSGRVARARRLSTSFVAHV 69
            MGYLM+WG LG LS PIL G SVI MLQHSK WAR MPDFSLLLQ WAGGD+GRVARARR+  +F AHV
Sbjct:  384 MGYLMAWGFLGGLSIPILAGISVIFMLQHSKAWARRMPDFSLLLQSWAGGDAGRVARARRMGYAFAAHV 452
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72699.17266.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3N4_ECTSI1.030e-2776.81Rhomboid domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 28..69
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72699contigM-pyrifera_M_contig72699:527..736 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72699.17266.1mRNA_M-pyrifera_M_contig72699.17266.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig72699 509..736 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig72699.17266.1 ID=prot_M-pyrifera_M_contig72699.17266.1|Name=mRNA_M-pyrifera_M_contig72699.17266.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MGYLMSWGMLGRLSTPILCGASVILMLQHSKGWARNMPDFSLLLQGWAGG
DSGRVARARRLSTSFVAHV*
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