mRNA_M-pyrifera_M_contig72625.17255.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72625.17255.1
Unique NamemRNA_M-pyrifera_M_contig72625.17255.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72625.17255.1 vs. uniprot
Match: D7FQW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQW4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.530e-17
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 SQYISRSDFLGCGGRLGWPKLSCDELRDSDRENFPCLWRAGRMFKDTVAHSLPT 162
            +QY+SR+D LGCGG+LGWPKL   +LRD +RENF  +WR GR FK TV  SL T
Sbjct:  144 AQYVSRTDILGCGGKLGWPKLDDYKLRDCERENFGFIWRTGRTFKHTVQESLET 197
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72625.17255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQW4_ECTSI2.530e-1762.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72625contigM-pyrifera_M_contig72625:200..361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.6982205-CDS-M-pyrifera_M_contig72625:199..3611622816622.6982205-CDS-M-pyrifera_M_contig72625:199..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72625 200..361 +
1692278082.6718554-CDS-M-pyrifera_M_contig72625:199..3611692278082.6718554-CDS-M-pyrifera_M_contig72625:199..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72625 200..361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72625.17255.1prot_M-pyrifera_M_contig72625.17255.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72625 200..361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72625.17255.1

>prot_M-pyrifera_M_contig72625.17255.1 ID=prot_M-pyrifera_M_contig72625.17255.1|Name=mRNA_M-pyrifera_M_contig72625.17255.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
SQYISRSDFLGCGGRLGWPKLSCDELRDSDRENFPCLWRAGRMFKDTVAH
SLPT
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mRNA from alignment at M-pyrifera_M_contig72625:200..361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72625.17255.1 ID=mRNA_M-pyrifera_M_contig72625.17255.1|Name=mRNA_M-pyrifera_M_contig72625.17255.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig72625:200..361+ (Macrocystis pyrifera P11B4 male)
TCGCAGTACATCTCGCGCTCCGACTTCCTGGGGTGCGGCGGCAGGCTGGG
GTGGCCCAAGCTCAGCTGCGACGAGCTGAGGGACAGCGACCGGGAGAACT
TCCCGTGCCTCTGGCGCGCGGGCCGCATGTTCAAGGACACCGTCGCCCAC
TCCCTCCCTACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72625:200..361+

>mRNA_M-pyrifera_M_contig72625.17255.1 ID=mRNA_M-pyrifera_M_contig72625.17255.1|Name=mRNA_M-pyrifera_M_contig72625.17255.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig72625:200..361+ (Macrocystis pyrifera P11B4 male)
TCGCAGTACATCTCGCGCTCCGACTTCCTGGGGTGCGGCGGCAGGCTGGG
GTGGCCCAAGCTCAGCTGCGACGAGCTGAGGGACAGCGACCGGGAGAACT
TCCCGTGCCTCTGGCGCGCGGGCCGCATGTTCAAGGACACCGTCGCCCAC
TCCCTCCCTACCTCGCAGTACATCTCGCGCTCCGACTTCCTGGGGTGCGG
CGGCAGGCTGGGGTGGCCCAAGCTCAGCTGCGACGAGCTGAGGGACAGCG
ACCGGGAGAACTTCCCGTGCCTCTGGCGCGCGGGCCGCATGTTCAAGGAC
ACCGTCGCCCACTCCCTCCCTACC
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