mRNA_M-pyrifera_M_contig7261.17254.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7261.17254.1
Unique NamemRNA_M-pyrifera_M_contig7261.17254.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Match: A0A6H5J5R6_9PHAE (Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J5R6_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 2.240e-48
Identity = 80/85 (94.12%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    1 AKDFDDLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG 255
            A DFDDLSGAQELALGELVA+KFGSDFFFLDRFPT IRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADML++ILEEKG
Sbjct:  589 ANDFDDLSGAQELALGELVADKFGSDFFFLDRFPTQIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLMQILEEKG 673
[Close]
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Match: A0A835YQK2_9STRA (Aspartate--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQK2_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.250e-40
Identity = 67/85 (78.82%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    1 AKDFDDLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG 255
            A+DFDDL+GAQELALG +V EKFG+DFF +DRFP+ IRPFYTMP PDD RYSNSYDL LRGQEICSGAQRCHDAD L++I+E KG
Sbjct:  430 AEDFDDLNGAQELALGAIVKEKFGTDFFIVDRFPSAIRPFYTMPAPDDPRYSNSYDLFLRGQEICSGAQRCHDADKLVQIIESKG 514
[Close]
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Match: A0A7S2USU3_9STRA (Aspartate--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USU3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.030e-40
Identity = 64/85 (75.29%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:    1 AKDFDDLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG 255
            A+DFDDLSGAQELALG++V EKFG+DFFFLDR+P+ +RPFYTMPCPDD RYSNSYD+ LRGQEICSGAQR HD D+L+E ++ +G
Sbjct:  317 AEDFDDLSGAQELALGKIVKEKFGTDFFFLDRYPSSVRPFYTMPCPDDSRYSNSYDIFLRGQEICSGAQRVHDPDLLVEQIKRQG 401
[Close]
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Match: A0A7S2LL32_9STRA (Aspartate--tRNA ligase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LL32_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.240e-38
Identity = 61/80 (76.25%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:   16 DLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG 255
            DL+GAQELALGE V EK+G+DFF LD++P+ IRPFYTMP P+D RYSNSYD+ +RG EICSGAQRCHD DMLLEIL+EKG
Sbjct:   70 DLNGAQELALGEAVKEKYGTDFFMLDKYPSTIRPFYTMPDPEDSRYSNSYDMFIRGLEICSGAQRCHDPDMLLEILKEKG 149
[Close]
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Match: A0A7R9WNB7_9STRA (Aspartate--tRNA ligase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNB7_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.430e-36
Identity = 55/81 (67.90%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:   13 DDLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG 255
            +DLSG  ELALG++V EK+G+DFF LD++P  +RPFYTMPCPDD ++SNSYD+ +RGQEICSGAQRCHD ++LL+IL++KG
Sbjct:  177 EDLSGTMELALGKVVKEKYGTDFFMLDKYPMTVRPFYTMPCPDDSKFSNSYDMFIRGQEICSGAQRCHDPELLLDILQQKG 257
[Close]
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Match: A0A7S2CUT1_9EUKA (Aspartate--tRNA ligase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CUT1_9EUKA)

HSP 1 Score: 129 bits (325), Expect = 1.480e-36
Identity = 58/85 (68.24%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 AKDFDDLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG 255
            A   DDL+  QE ALG LVAEK  +DFFFLDRFP  +RPFYTMPCPDD+RYSNSYD+ LRG+EICSGAQR HD  +L+E +  KG
Sbjct:   27 APGLDDLNTVQERALGRLVAEKHDTDFFFLDRFPASVRPFYTMPCPDDRRYSNSYDVFLRGEEICSGAQRVHDPQLLIETIASKG 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Match: A0A7S1ZMF3_TRICV (Aspartate--tRNA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZMF3_TRICV)

HSP 1 Score: 133 bits (334), Expect = 2.540e-36
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    7 DFDDLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG 255
            +  DL+GA ELALG  V EK+G+DFF LD++P+ IRPFYTMP PDD R+SNSYD+ LRGQE+CSGAQRCHD D++L+ILEEKG
Sbjct:  170 EMGDLTGAMELALGAAVKEKYGTDFFMLDKYPSSIRPFYTMPDPDDPRFSNSYDIFLRGQEVCSGAQRCHDPDLVLKILEEKG 252
[Close]
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Match: A0A7S1B3S7_9STRA (Aspartate--tRNA ligase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3S7_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.970e-36
Identity = 62/80 (77.50%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:   16 DLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG 255
            DL+GA ELALGE+V EK  +DFF LDR+P+ IRPFYTMPCPDD  YSNSYD+ LRGQEICSGAQRCHD DMLL IL+EKG
Sbjct:  497 DLTGAMELALGEVVREKHRTDFFMLDRYPSAIRPFYTMPCPDDPLYSNSYDMFLRGQEICSGAQRCHDVDMLLRILKEKG 576
[Close]
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Match: A0A7S3XT08_HETAK (Aspartate--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT08_HETAK)

HSP 1 Score: 135 bits (340), Expect = 2.610e-35
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    7 DFDDLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG 255
            DFDDL+GAQEL LG LV EK+G+DFF LDRFP+ IRPFYTMPCPDD RYSNSYDL +RGQEICSGAQR HD D+L   +  +G
Sbjct:  504 DFDDLNGAQELELGRLVKEKYGTDFFMLDRFPSAIRPFYTMPCPDDDRYSNSYDLFIRGQEICSGAQRVHDPDLLEAGIRRQG 586
[Close]
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Match: A0A8J9X6U5_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6U5_PHATR)

HSP 1 Score: 129 bits (323), Expect = 7.460e-35
Identity = 55/80 (68.75%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:   16 DLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKRYSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG 255
            D++GA ELALG +V EK+G+DFF LD++P+ IRPFYTMP P+D RYSNSYD+ +RGQEICSGAQRCHD D++ +IL+EKG
Sbjct:  155 DMNGAMELALGRVVKEKYGTDFFMLDKYPSSIRPFYTMPDPEDPRYSNSYDIFIRGQEICSGAQRCHDPDLVEKILQEKG 234
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7261.17254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J5R6_9PHAE2.240e-4894.12Aspartate--tRNA ligase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835YQK2_9STRA1.250e-4078.82Aspartate--tRNA ligase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2USU3_9STRA2.030e-4075.29Aspartate--tRNA ligase n=1 Tax=Fibrocapsa japonica... [more]
A0A7S2LL32_9STRA1.240e-3876.25Aspartate--tRNA ligase (Fragment) n=1 Tax=Leptocyl... [more]
A0A7R9WNB7_9STRA1.430e-3667.90Aspartate--tRNA ligase n=1 Tax=Craspedostauros aus... [more]
A0A7S2CUT1_9EUKA1.480e-3668.24Aspartate--tRNA ligase n=1 Tax=Haptolina brevifila... [more]
A0A7S1ZMF3_TRICV2.540e-3669.88Aspartate--tRNA ligase n=1 Tax=Trieres chinensis T... [more]
A0A7S1B3S7_9STRA6.970e-3677.50Aspartate--tRNA ligase n=1 Tax=Corethron hystrix T... [more]
A0A7S3XT08_HETAK2.610e-3573.49Aspartate--tRNA ligase n=1 Tax=Heterosigma akashiw... [more]
A0A8J9X6U5_PHATR7.460e-3568.75Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7261contigM-pyrifera_M_contig7261:7520..9384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue1.8e-40
Seed eggNOG ortholog2880.D7FL56
KEGG rclassRC00055,RC00523
KEGG koko:K01876,ko:K22503
KEGG ReactionR05577
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aspartyl-tRNA aminoacylation
EggNOG OGsCOG0017@1,KOG0556@2759
EC6.1.1.12
COG Functional cat.J
BiGG ReactioniRC1080.CRv4_Au5_s6_g12982_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons3
Model size258
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7261.17254.1prot_M-pyrifera_M_contig7261.17254.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7261 7520..9383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.637573-CDS-M-pyrifera_M_contig7261:7519..76681622816622.637573-CDS-M-pyrifera_M_contig7261:7519..7668Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7261 7520..7668 +
1692278082.6391904-CDS-M-pyrifera_M_contig7261:7519..76681692278082.6391904-CDS-M-pyrifera_M_contig7261:7519..7668Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7261 7520..7668 +
1622816622.649869-CDS-M-pyrifera_M_contig7261:8255..83151622816622.649869-CDS-M-pyrifera_M_contig7261:8255..8315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7261 8256..8315 +
1692278082.6525433-CDS-M-pyrifera_M_contig7261:8255..83151692278082.6525433-CDS-M-pyrifera_M_contig7261:8255..8315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7261 8256..8315 +
1622816622.6638293-CDS-M-pyrifera_M_contig7261:9337..93831622816622.6638293-CDS-M-pyrifera_M_contig7261:9337..9383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7261 9338..9383 +
1692278082.6620915-CDS-M-pyrifera_M_contig7261:9337..93831692278082.6620915-CDS-M-pyrifera_M_contig7261:9337..9383Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7261 9338..9383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7261.17254.1

>prot_M-pyrifera_M_contig7261.17254.1 ID=prot_M-pyrifera_M_contig7261.17254.1|Name=mRNA_M-pyrifera_M_contig7261.17254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
AKDFDDLSGAQELALGELVAEKFGSDFFFLDRFPTGIRPFYTMPCPDDKR
YSNSYDLILRGQEICSGAQRCHDADMLLEILEEKG
back to top

mRNA from alignment at M-pyrifera_M_contig7261:7520..9384+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7261.17254.1 ID=mRNA_M-pyrifera_M_contig7261.17254.1|Name=mRNA_M-pyrifera_M_contig7261.17254.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1865bp|location=Sequence derived from alignment at M-pyrifera_M_contig7261:7520..9384+ (Macrocystis pyrifera P11B4 male)
GCGAAAGACTTCGACGACTTGTCCGGCGCGCAAGAGCTGGCCCTCGGCGA
ACTGGTTGCGGAAAAGTTCGGCTCTGACTTCTTTTTCCTCGACCGGTTCC
CGACAGGTATCAGGCCGTTCTACACGATGCCCTGTCCCGACGATAAGAGG
TGAGGGTGGAGGGCAGGAGGGGACCGTATTTATTCATTTATGTATTCATC
ACCTCGATAGCTGTGTTTATCTCGGAGGGGTTTGTTTGTCCGCGCGTTCC
ACGGGTGGTTGCGCCTTGGACGTCGTCGTCTACCGAAGGCTGGGAGATTT
GGTTTGTTCTGTGGTTGTCGCATGTTGTATGTTGTGTGTTGTGTGTTGTT
GCTCTTTTGTTTTTTTTTTGGTCCTTCTCGTTTATTTTGATGCCTGTGCC
ATTTTTTTCGCGCGAGGCAACCGAACTGTGCTATTCCCCCGTCCCGGAGC
GTCAGCCCGCCGTATACGGACATCAGCACGGCGAAGGACAGCCAAAACTA
CGACCACGATAATGCCTCCACTACAACTGCCTGTGGTTGCTGAGGACCCC
ACGCAGCTTTCACGCTCTGCAGCTGTGCTCCTGTCTCGCCAGCTGTCCTT
AAGCAGCCCTTGTCTTCTTTTTCGTCTTCAAGCTGATGGCTTTTCCGTTA
CATCTCTGTCCACACCCTGTTGCCCCGTGCTCTCTCCCGTTCCATCGCGA
CGGAACTCTCCCTTTGGACACCTTTTTTTCGCTCAGGTACTCCAACTCGT
ACGACCTCATCCTCCGTGGGCAGGAAATTTGCTCGGGGGCGCAACGGTGA
GTCATGGTGGCCACAAACAAGCAGGCCGTATCTCGCCATTTCTCGCTCGA
CTTTTCCATGAAAAAAAAGGGCAGCGCTGTTCACAGGTCGATATCGGACC
CGCGGGTCGGGTCAGGTGGTCTTCGAAGACTCCCGGGTCGGGTCGGGTCG
GGTCGGGTCAGGAGGTATTCGAAGTTTCACGGGTTTGGTCGAGTCGAATT
AGGTGGCCCCATGCCGAGAGCCAACCCGCGTGTTTTGACCAGACCCGCGA
ACAGCACTGAAAAACTGCAGGACTCTTCACGGGTCAGGGGGTCTTGAAAA
TCTCACAGGTCAGGTCAGGTCGGATCGGGTTGGGTGGGGTCAGGATGTTT
TCAAAGTCTCACGAGTCGGACCGCGTCACCCTGACCCGACCCGACCCGAC
CCGGGAGGTTTGGCCTGACCCGTCAATGGCCCTGGAAAATAGGCTGTTTG
TGTCGGGGTCGTTCGGGACTGGCGGGGGGGCGGAGGGGGGGGGGGGTGAA
CGCCTGTGGAACAGCACCTACGATTTGGGAGACAACCCATATTCTTGTAA
TGAGGGCGGGGTGAATTTTGCGGTAGTAGAAGGGTTCACACCTAGGATAG
ACCACATAGATGATTGATCCCCCTACATGATACTGTCGACCTTTCAGGGG
CAGGCACTATTTCCTGATCTGTATGGCCTACTACTACTACTACTAGCTCG
TTTTTTGCCGGGTGGGAGTTGGTATATAGCCTGCATGACCCGCCGTTGGA
ACCATTTGCTGGGTTGGATCTGTGCCACTTCAAGACAGATCCTGCGCAAC
GTCTCGTAGAACGGCGGGCTGGGATCTAGATTGGCTCATTCGTGATGTGT
CCGATTTGTCCGACGCTGAAGTGTGGGTGCGGTTTTGAAGAGGTCACGTG
CTGCTCGCAGAAGAATCACCCGTCCCACCCTCGCCGTTTCACGAGATGCC
CCAGCGTAAGGAAGAAGCATCGCCCATTCCTGCTCCGTTCGGGCCGCATA
TTCTTCGCCTGTTCCCAGGTGTCACGATGCCGACATGCTGTTGGAGATCT
TAGAGGAGAAGGGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7261:7520..9384+

>mRNA_M-pyrifera_M_contig7261.17254.1 ID=mRNA_M-pyrifera_M_contig7261.17254.1|Name=mRNA_M-pyrifera_M_contig7261.17254.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig7261:7520..9384+ (Macrocystis pyrifera P11B4 male)
GCGAAAGACTTCGACGACTTGTCCGGCGCGCAAGAGCTGGCCCTCGGCGA
ACTGGTTGCGGAAAAGTTCGGCTCTGACTTCTTTTTCCTCGACCGGTTCC
CGACAGGTATCAGGCCGTTCTACACGATGCCCTGTCCCGACGATAAGAGG
CGAAAGACTTCGACGACTTGTCCGGCGCGCAAGAGCTGGCCCTCGGCGAA
CTGGTTGCGGAAAAGTTCGGCTCTGACTTCTTTTTCCTCGACCGGTTCCC
GACAGGTATCAGGCCGTTCTACACGATGCCCTGTCCCGACGATAAGAGGT
ACTCCAACTCGTACGACCTCATCCTCCGTGGGCAGGAAATTTGCTCGGGG
GCGCAACGGTACTCCAACTCGTACGACCTCATCCTCCGTGGGCAGGAAAT
TTGCTCGGGGGCGCAACGGTGTCACGATGCCGACATGCTGTTGGAGATCT
TAGAGGAGAAGGGGGTGTCACGATGCCGACATGCTGTTGGAGATCTTAGA
GGAGAAGGGG
back to top