prot_M-pyrifera_M_contig72471.17231.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig72471.17231.1
Unique Nameprot_M-pyrifera_M_contig72471.17231.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length134
Homology
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A5J4U0R1_9EUKA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4U0R1_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 5.400e-14
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 0
Query:    1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILG--GRIFQGPDLHTVLAARLRRCSYFVREA 114
            LT D  L YFS S FYD+ CIN++A  + L +E AR  + G EYS+  L+  D        +FI+ +       +  +L A YYIL   GR++Q PDL++++ +RL R  YF R A
Sbjct:   27 LTRDNWLEYFSLSQFYDRNCINQKAREQQL-NEVARLNLIGIEYSLEDLSTDD--------IFIISKRNRDAP-KHTQLLALYYILAKEGRLYQCPDLNSIIKSRLNRALYFFRGA 132          
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A485KG13_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG13_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.080e-14
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 0
Query:    1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 132
            L   TVL YF+ S +YDK C NE    +    E     MTG EY    L P DA+ +  + LF++ +   +G  R   + A YY+L   I+Q P+ +T+L +RL++CSY + +A KA+     ++P    +W
Sbjct:   28 LNHQTVLYYFAGSPWYDKSCNNEILKMQRRPLEHLVS-MTGIEYE---LQPNDAK-QLPQNLFVIHKKNRTGP-RTAAVMAIYYVLDQTIYQAPNTYTLLTSRLKKCSYRINKAFKALSAGVRFSPTEGYSW 153          
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A024TZS3_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZS3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 9.910e-13
Identity = 44/132 (33.33%), Postives = 71/132 (53.79%), Query Frame = 0
Query:    1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 132
            L   +VL YF+ S +YDK C NE    +    E  +  MTG EY    L P DA+ +  + L+++ +   +G  R   + A YY+L   I+Q P+ +T+L +RL++CS+ V +A KA+     ++P     W
Sbjct:   33 LDHQSVLYYFAGSPWYDKNCNNEILKMQRRPLEHLQG-MTGIEYE---LQPNDAK-QVPQILYVIHKKNRTGP-RTAHVMAVYYVLDATIYQAPNTYTLLTSRLKKCSFRVNKAFKALSAGVRFSPTEGYAW 158          
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A6G0XIG6_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIG6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.190e-12
Identity = 45/133 (33.83%), Postives = 69/133 (51.88%), Query Frame = 0
Query:    1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKS-GETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 132
            L   TVL YF+ S +YDK C NE    +    E     MTG EY +        EAK   + LF++ +   +G  R   + A YY+L   I+Q P+ +T+L +RL++CSY + +A KA+     ++P    +W
Sbjct:   28 LNHQTVLYYFAGSPWYDKSCNNEILKMQRRPLEHLVS-MTGIEYELQL-----NEAKQLPQNLFVIHKKNRTGP-RTASVMAIYYVLDQTIYQAPNTYTLLTSRLKKCSYRINKAFKALSAGVRFSPTEGYSW 153          
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: W4GBN3_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBN3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.580e-12
Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 0
Query:    1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKS-GETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 132
            L   +VL YF+ S +YDK C NE    +    E  +  MTG EY + P      EAK   + L+++ +   +   R   + A YY+L   I+Q P+ +T+L +RL++CSY + +A KA+     ++P     W
Sbjct:   30 LDHQSVLYYFAGSPWYDKSCNNEILKMQRRPLEHLQG-MTGIEYELQP-----NEAKQLPQVLYVIHKKNRTSP-RTANVMAVYYVLDCTIYQAPNTYTLLTSRLKKCSYRINKAFKALSAGVRFSPTEGYAW 155          
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: W4GAK2_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GAK2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.460e-12
Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 0
Query:    1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKS-GETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 132
            L   +VL YF+ S +YDK C NE    +    E  +  MTG EY + P      EAK   + L+++ +   +   R   + A YY+L   I+Q P+ +T+L +RL++CSY + +A KA+     ++P     W
Sbjct:   30 LDHQSVLYYFAGSPWYDKSCNNEILKMQRRPLEHLQG-MTGIEYELQP-----NEAKQLPQVLYVIHKKNRTSP-RTANVMAVYYVLDCTIYQAPNTYTLLTSRLKKCSYRINKAFKALSAGVRFSPTEGYAW 155          
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: UPI000644C0CC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C0CC)

HSP 1 Score: 61.6 bits (148), Expect = 7.860e-9
Identity = 41/126 (32.54%), Postives = 59/126 (46.83%), Query Frame = 0
Query:    1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPE--LQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATW 124
            L   TVL YFS S FYDK+C NE    + L   +A K M G EY V               LF+V +        P +  +Q  YYI+ G I+Q PD+ +V  +R+ +  + +  A + +    TW
Sbjct:   44 LNKQTVLLYFSMSQFYDKQCNNEILKMQRL-DPSALKTMIGIEYEV--------VMAQEPMLFLVAK---QSRVSPTDASVQTLYYIINGTIYQSPDIRSVFESRMVQSLFHLIHAFEKLLSTVTW 157          
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A5S6R3W3_TRIMR (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R3W3_TRIMR)

HSP 1 Score: 60.1 bits (144), Expect = 3.490e-8
Identity = 39/134 (29.10%), Postives = 65/134 (48.51%), Query Frame = 0
Query:    1 LTADTVLGYFSRS--DFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 132
            + A  VL YF+ +   FYD  C+NE+   + L+ E   +  +G EY++           + E LF++ + Y         L+  YYI+GG ++Q PDL +VL +RL+     +R A + +K    + P     W
Sbjct:   26 INASNVLDYFTNTMNPFYDPNCLNEQIRMQRLSPEVLSR-SSGVEYAL---------LYACEPLFVIRKQYRQANQTITPLE-DYYIIGGTVYQAPDLCSVLNSRLQASINHLRTAFEEVKSYYRFHPAKGYYW 148          
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: A0A1X7UXR5_AMPQE (Mediator of RNA polymerase II transcription subunit 6 n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UXR5_AMPQE)

HSP 1 Score: 59.7 bits (143), Expect = 4.950e-8
Identity = 40/135 (29.63%), Postives = 67/135 (49.63%), Query Frame = 0
Query:    1 LTADTVLGYFSR--SDFYDKECINERAAA-RGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATWTPEGEATW 132
            L  D ++ YFS+  + FYD+ C NE     RG  S      MTG EYS+  +            L+++++ +     +   L A+YY+LGG ++Q PDLH+V+ +RL    + + +A +  +  A + P     W
Sbjct:   20 LNQDNIMDYFSQRSNPFYDRTCNNEVIRMQRGDPSHLVN--MTGIEYSLFLVQE--------PVLYVIKKVHRQSPEKVIPL-ANYYVLGGVVYQCPDLHSVINSRLLSSLHLIHQAFEEAQSYARYGPSQGYYW 143          
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=MED6_DICDI)

HSP 1 Score: 59.3 bits (142), Expect = 7.990e-8
Identity = 38/124 (30.65%), Postives = 53/124 (42.74%), Query Frame = 0
Query:    1 LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLAPGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVLAARLRRCSYFVREAVKAIKEDATW 124
            L   T+L YFS S FYDK C NE+   + L   A  K M G EY +          K  E  F +             +   YY++ G I+Q P+LH V  +R+ +    + EA  +I     W
Sbjct:   82 LNPQTILQYFSYSQFYDKNCNNEQLKMQRLDLSAL-KNMDGLEYEL---------IKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNW 195          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72471.17231.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4U0R1_9EUKA5.400e-1439.66Mediator of RNA polymerase II transcription subuni... [more]
A0A485KG13_9STRA6.080e-1434.85Mediator of RNA polymerase II transcription subuni... [more]
A0A024TZS3_9STRA9.910e-1333.33Mediator of RNA polymerase II transcription subuni... [more]
A0A6G0XIG6_9STRA2.190e-1233.83Mediator of RNA polymerase II transcription subuni... [more]
W4GBN3_9STRA6.580e-1232.33Mediator of RNA polymerase II transcription subuni... [more]
W4GAK2_9STRA9.460e-1232.33Mediator of RNA polymerase II transcription subuni... [more]
UPI000644C0CC7.860e-932.54hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A5S6R3W3_TRIMR3.490e-829.10Mediator of RNA polymerase II transcription subuni... [more]
A0A1X7UXR5_AMPQE4.950e-829.63Mediator of RNA polymerase II transcription subuni... [more]
MED6_DICDI7.990e-830.65Putative mediator of RNA polymerase II transcripti... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038566Med6 core domain superfamilyGENE3D3.10.450.580coord: 1..119
e-value: 2.3E-18
score: 68.0
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 1..124
e-value: 8.9E-19
score: 67.6
IPR007018Mediator complex, subunit Med6PANTHERPTHR13104MED-6-RELATEDcoord: 1..133
NoneNo IPR availablePANTHERPTHR13104:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6coord: 1..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72471contigM-pyrifera_M_contig72471:306..707 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72471.17231.1mRNA_M-pyrifera_M_contig72471.17231.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig72471 306..707 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig72471.17231.1 ID=prot_M-pyrifera_M_contig72471.17231.1|Name=mRNA_M-pyrifera_M_contig72471.17231.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
LTADTVLGYFSRSDFYDKECINERAAARGLTSEAARKLMTGFEYSVHPLA
PGDAEAKSGETLFIVERWYWSGEGRPPELQAHYYILGGRIFQGPDLHTVL
AARLRRCSYFVREAVKAIKEDATWTPEGEATWSS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038566Med6_sf
IPR007018Mediator_Med6