mRNA_M-pyrifera_M_contig72398.17213.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72398.17213.1
Unique NamemRNA_M-pyrifera_M_contig72398.17213.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72398.17213.1 vs. uniprot
Match: A0A061R8P5_9CHLO (Prolyl 4-hydroxylase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R8P5_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 1.040e-7
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  139 KFPPQAGDALLWFNHHANLTMDRQSLHGGCPVGEGAGEKIIAQRWMR 279
            K+ P+ GDALL+++ H N T+DR SLHGGCPV  G  EK +  +W+R
Sbjct:  290 KYKPRKGDALLFYSLHPNGTIDRHSLHGGCPVVRG--EKWVMTKWIR 334
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BLAST of mRNA_M-pyrifera_M_contig72398.17213.1 vs. uniprot
Match: A0A7S3R2Q1_DUNTE (Hypothetical protein n=2 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R2Q1_DUNTE)

HSP 1 Score: 53.9 bits (128), Expect = 2.330e-6
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:  130 DVLKFPPQAGDALL-WFNHHANLTMDRQSLHGGCPVGEGAGEKIIAQRWM 276
            D  K+ P+ GDA+L W  H  +  +DRQ LHGGCPV +G  EK +A +W+
Sbjct:  252 DGFKYKPRQGDAVLFWSTHPGSTEIDRQGLHGGCPVTKG--EKWVATKWL 299
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BLAST of mRNA_M-pyrifera_M_contig72398.17213.1 vs. uniprot
Match: A0A2P6TUS4_CHLSO (Putative prolyl 4-hydroxylase 9 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TUS4_CHLSO)

HSP 1 Score: 53.9 bits (128), Expect = 2.630e-6
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:  136 LKFPPQAGDALLWFNHHANLTMDRQSLHGGCPVGEGAGEKIIAQRWMR 279
            +K  P+ GDALL++N H N T+D+ SLHGGCPV  G   K    +W+R
Sbjct:  708 IKVKPKQGDALLFWNTHVNGTIDKHSLHGGCPVVTGT--KWAMTKWIR 753
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BLAST of mRNA_M-pyrifera_M_contig72398.17213.1 vs. uniprot
Match: E1ZAG5_CHLVA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZAG5_CHLVA)

HSP 1 Score: 51.6 bits (122), Expect = 1.570e-5
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:  136 LKFPPQAGDALLWFNHHANLTMDRQSLHGGCPVGEGAGEKIIAQRWMR 279
            +K  P+ GDALL+F+   N T+D+ SLHGGCPV   AG K    +W+R
Sbjct:  281 IKVKPRQGDALLFFSVSVNGTLDKHSLHGGCPVV--AGTKWAMTKWIR 326
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BLAST of mRNA_M-pyrifera_M_contig72398.17213.1 vs. uniprot
Match: A0A392VGS7_9FABA (Prolyl 4-hydroxylase subunit alpha-1-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392VGS7_9FABA)

HSP 1 Score: 47.0 bits (110), Expect = 3.450e-5
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:  148 PQAGDALLWFNHHANLTMDRQSLHGGCPVGEGAGEKIIAQRWMR 279
            P+ GDA+L+++   ++T+DR SLHG CPV +G  +K    +WMR
Sbjct:    1 PKMGDAILFWSMKPDVTLDRASLHGACPVIKG--DKWSCAKWMR 42
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72398.17213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A061R8P5_9CHLO1.040e-753.19Prolyl 4-hydroxylase n=1 Tax=Tetraselmis sp. GSL01... [more]
A0A7S3R2Q1_DUNTE2.330e-648.00Hypothetical protein n=2 Tax=Dunaliella tertiolect... [more]
A0A2P6TUS4_CHLSO2.630e-650.00Putative prolyl 4-hydroxylase 9 n=1 Tax=Chlorella ... [more]
E1ZAG5_CHLVA1.570e-550.00Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A392VGS7_9FABA3.450e-545.45Prolyl 4-hydroxylase subunit alpha-1-like (Fragmen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72398contigM-pyrifera_M_contig72398:65..346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog3218.PP1S19_322V6.1
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0007275,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0012505,GO:0021700,GO:0022622,GO:0030154,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048731,GO:0048764,GO:0048765,GO:0048856,GO:0048869,GO:0071695,GO:0080147,GO:0090558,GO:0090627,GO:0099402,GO:1905392
EggNOG free text desc.prolyl 4-hydroxylase
EggNOG OGs37N5X@33090,3G7T9@35493,KOG1591@1,KOG1591@2759
EC1.14.11.2
COG Functional cat.E
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.545078-CDS-M-pyrifera_M_contig72398:64..3461622816620.545078-CDS-M-pyrifera_M_contig72398:64..346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72398 65..346 +
1692278081.4099572-CDS-M-pyrifera_M_contig72398:64..3461692278081.4099572-CDS-M-pyrifera_M_contig72398:64..346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72398 65..346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72398.17213.1prot_M-pyrifera_M_contig72398.17213.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72398 65..346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72398.17213.1

>prot_M-pyrifera_M_contig72398.17213.1 ID=prot_M-pyrifera_M_contig72398.17213.1|Name=mRNA_M-pyrifera_M_contig72398.17213.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
HTFALDPSRLPPTPSPSTAPILPNASTIDEGIDLPMEPFCQHPDVLKFPP
QAGDALLWFNHHANLTMDRQSLHGGCPVGEGAGEKIIAQRWMRW
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mRNA from alignment at M-pyrifera_M_contig72398:65..346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72398.17213.1 ID=mRNA_M-pyrifera_M_contig72398.17213.1|Name=mRNA_M-pyrifera_M_contig72398.17213.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig72398:65..346+ (Macrocystis pyrifera P11B4 male)
CATACGTTTGCTTTGGACCCTTCTCGTCTCCCTCCCACTCCCTCACCCTC
TACCGCTCCAATCCTCCCCAATGCGAGCACTATTGATGAAGGAATCGATC
TTCCAATGGAGCCATTTTGCCAACATCCTGATGTCTTAAAATTCCCACCT
CAAGCTGGAGATGCACTCCTGTGGTTCAACCATCATGCAAACCTCACAAT
GGATCGGCAATCCTTGCATGGTGGATGCCCGGTTGGGGAAGGTGCAGGGG
AGAAAATCATTGCTCAACGTTGGATGCGATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72398:65..346+

>mRNA_M-pyrifera_M_contig72398.17213.1 ID=mRNA_M-pyrifera_M_contig72398.17213.1|Name=mRNA_M-pyrifera_M_contig72398.17213.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig72398:65..346+ (Macrocystis pyrifera P11B4 male)
CATACGTTTGCTTTGGACCCTTCTCGTCTCCCTCCCACTCCCTCACCCTC
TACCGCTCCAATCCTCCCCAATGCGAGCACTATTGATGAAGGAATCGATC
TTCCAATGGAGCCATTTTGCCAACATCCTGATGTCTTAAAATTCCCACCT
CAAGCTGGAGATGCACTCCTGTGGTTCAACCATCATGCAAACCTCACAAT
GGATCGGCAATCCTTGCATGGTGGATGCCCGGTTGGGGAAGGTGCAGGGG
AGAAAATCATTGCTCAACGTTGGATGCGATGGCATACGTTTGCTTTGGAC
CCTTCTCGTCTCCCTCCCACTCCCTCACCCTCTACCGCTCCAATCCTCCC
CAATGCGAGCACTATTGATGAAGGAATCGATCTTCCAATGGAGCCATTTT
GCCAACATCCTGATGTCTTAAAATTCCCACCTCAAGCTGGAGATGCACTC
CTGTGGTTCAACCATCATGCAAACCTCACAATGGATCGGCAATCCTTGCA
TGGTGGATGCCCGGTTGGGGAAGGTGCAGGGGAGAAAATCATTGCTCAAC
GTTGGATGCGATGG
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