mRNA_M-pyrifera_M_contig72395.17212.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72395.17212.1
Unique NamemRNA_M-pyrifera_M_contig72395.17212.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 296 bits (759), Expect = 2.180e-89
Identity = 149/287 (51.92%), Postives = 193/287 (67.25%), Query Frame = 1
Query:    4 VQRKLNVRSERVKSVDLHPVEPWVLVGLYTGKAVIHDYEAKRVIKSFDISELPVRCARFVSRMQWIVAGSDDMMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHMWDWSRDWALSRSFEGHAHYVMMARFNPKDPHTFATASLDRTIRVWSTNSSAHNFMLEGHEAGVNCVSYYPGGDKPYLLSGADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLXXXXXXXXXXXXXXXKTYGVESVISMGMERCWAVDASAEGNKVACGFDEG 864
            +++ L+ RS+RVKSVDLHP EPWVL  LY G   I DYE   ++KS+++  LPVRCA+F+ R QW +A SDDMM+R                                        + +WDW R W   + FEGH HYVMM + NP+D +TFA+ASLDR+I+VW  ++SA +F L+GH+ GVNC+ YYPGGD+PYL+SGADD T++IWDYQT++CV TL  H +NVSAA+FHPRLP+XXXXXXXXXXXXX   TY  E+ ++  MER WA+  SA+ NKVA G+DEG
Sbjct:    7 IRKMLSSRSDRVKSVDLHPTEPWVLTALYNGNVFIWDYEQATMVKSYEVCSLPVRCAKFIVRKQWFIAASDDMMLRVYNYNTMEKVNAWEAHTDYIRFVEVHPNLPYVLSCSDDMSIKLWDWERGWDCCQVFEGHVHYVMMIKVNPRDTNTFASASLDRSIKVWGVSASAPHFTLDGHDRGVNCLDYYPGGDRPYLVSGADDKTVRIWDYQTKTCVQTLVGHHNNVSAALFHPRLPVXXXXXXXXXXXXXHSTTYRAETTLNYSMERAWALAVSADSNKVAVGYDEG 293          
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Match: A0A5A8EFI0_CAFRO (Coatomer_WDAD domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8EFI0_CAFRO)

HSP 1 Score: 288 bits (737), Expect = 3.300e-86
Identity = 153/292 (52.40%), Postives = 195/292 (66.78%), Query Frame = 1
Query:    4 VQRKLNVRSERVKSVDLHPVEPWVLVGLYTGKAVIHDYEAKRVIKSFDISE-LPVRCARFVSRMQWIVAGSDDMMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHMWDWSRDWALSRSFEGHAHYVMMARFNPKDPHTFATASLDRTIRVWSTNSSAH----NFMLEGHEAGVNCVSYYPGGDKPYLLSGADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLXXXXXXXXXXXXXXXKTYGVESVISMGMERCWAVDASAEGNKVACGFDEG 864
            ++  L   SERVKSVDLHP EPW+L GLY G  +I++ E  +V+K+F+I+   PVRCARFV+R+  +VAGSDD M+R                                        L +WD    +    +FEGHAH+VMMARFNPKD +TFA+ASLDR+++VW+ +  AH    NF L+GHE GVNCV Y+ GGD+PYL+SGADDHT++IWDYQTRSCVT L  H+ N+SA ++HPRLPLXXXXXXXXXXXXXX  TY  E+ +S G++RCWAV AS   N++A GFD G
Sbjct:    7 IKEVLRKPSERVKSVDLHPTEPWILAGLYDGNVIIYNIETGKVVKAFEIAPGTPVRCARFVARLSLVVAGSDDFMLRAVNYNTGDKVAEQDAHSDYIRYVEPHPSSGALLTASDDMTLKLWDMGNGFKHIHTFEGHAHFVMMARFNPKDANTFASASLDRSVKVWTASGQAHTVEPNFSLDGHERGVNCVDYFHGGDRPYLISGADDHTLRIWDYQTRSCVTVLEGHSDNISAVLYHPRLPLXXXXXXXXXXXXXXAATYKTEATLSYGLDRCWAVGASVGSNRIAMGFDGG 298          
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 281 bits (720), Expect = 8.900e-85
Identity = 138/290 (47.59%), Postives = 175/290 (60.34%), Query Frame = 1
Query:    4 VQRKLNVRSERVKSVDLHPVEPWVLVGLYTGKAVIHDYEAKRVIKSFDISELPVRCARFVSRMQWIVAGSDDMMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LHMWDWSRDWALSRSFEGHAHYVMMARFNPKDPHTFATASLDRTIRVWS-TNSSAH-NFMLEGHEAGVNCVSYYPGGDKPYLLSGADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLXXXXXXXXXXXXXXXKTYGVESVISMGMERCWAVDASAEGNKVACGFDEG 864
            +++ L+ RSERVK VD+HP EPW+L  LY+GK ++ D      IKSFDI ELPVR A+F++R QW +  SDDM +R                                         + +WDW ++W  +  FEGH HYVMM + NPKD +TFA+ASLDRT++VW  TNS    NF LEGHE G NCV YYPGGDKPYL+SGADD  I+IWDYQT+SCV  L  H++NVSA  FHPRLPL                TY  E+ ++ GMER WA+ ++ + NK+A GFDEG
Sbjct:    7 IKKALSQRSERVKCVDIHPSEPWLLAALYSGKVLMMDTNTSATIKSFDICELPVRSAKFIARKQWFMTASDDMQLRVYNYNTMEKVKAWERAHDDYIRYIEVHPTLPYVLTSSDDLTIKLWDWEKNWDCTNVFEGHGHYVMMIKINPKDTNTFASASLDRTVKVWGLTNSDGGANFSLEGHERGCNCVDYYPGGDKPYLISGADDTQIRIWDYQTKSCVQVLEGHSNNVSAVCFHPRLPLIVSASEDGTVRLWHSTTYRAETTLNYGMERAWALASTPDSNKLAIGFDEG 296          
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 275 bits (703), Expect = 1.740e-84
Identity = 170/291 (58.42%), Postives = 213/291 (73.20%), Query Frame = 1
Query:    4 VQRKLNVRSERVKSVDLHPVE-PWVLVGLYTGKAVIHDYEAKRVIKSFDISELPVRCARFVSRMQWIVAGSDDMMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHMWDWSRDWALSRSFEGHAHYVMMARFNPKDPHTFATASLDRTIRVWSTNSSAHNFMLEG---HEAGVNCVSYYPGGDKPYLLSGADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLXXXXXXXXXXXXXXXKTYGVESVISMGMERCWAVDASAEGNKVACGFDEG 864
            ++++L  RS+RVKSVD++P E PWVL  LY+G   I DY    +IKSF++   PVRCARF+ R  WI+AG+DDM   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   WDW RD+   + FEGH HYVMM + NP+D +TFA+ASLD+TI+VW   ++  +F L+G   HE GVNC+ YYPGGDKPYLLSGADD T+KIWDYQT++C+ TL  H+HNVS+  FHPRLP+                TY  E+ ++ G+ER W + A+ + NK+A G+DEG
Sbjct:    7 IKKELTARSDRVKSVDIYPAEHPWVLSALYSGNVYIWDYSNNTLIKSFEMGTNPVRCARFIVRKNWIIAGTDDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDWDRDFECIQVFEGHGHYVMMVKINPRDTNTFASASLDKTIKVWGLTANTPHFSLDGPGAHEKGVNCIDYYPGGDKPYLLSGADDRTVKIWDYQTKACLQTLEGHSHNVSSVCFHPRLPMIISASEDGTVRLWHSTTYRPETTLNYGLERAWCIAATKDANKIAIGYDEG 297          
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Match: A0A834WCP9_9FABA (Coatomer subunit beta'-2 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834WCP9_9FABA)

HSP 1 Score: 273 bits (697), Expect = 7.790e-84
Identity = 143/279 (51.25%), Postives = 182/279 (65.23%), Query Frame = 1
Query:   10 RKLNVRSERVKSVDLHPVEPWVLVGLYTGKAVIHDYEAKRVI----------KSFDISELPVRCARFVSRMQWIVAGSDDMMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHMWDWSRDWALSRSFEGHAHYVMMARFNPKDPHTFATASLDRTIRVWSTNSSAHNFMLEGHEAGVNCVSYYPGGDKPYLLSGADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLXXXXXXXXXXXXXXXKTYGVESVISMGMERCWAV 816
            RKL  RSERVKSVDLHP EPW+L  LY+G   I +Y+++  I          KSF+++ELPVR A+FV+R QW+VAG+DDM +R                                        + +WDW + W  ++ FEGH+HYVM   FNPKD +TFA+ASLDRTI++W+  S   NF L+ H+ GVNCV Y+ GGDKPYL++G+DDHT K+WDYQT+SCV TL  HTHNVSA  FHP LP XXXXXXXXXXXXXXX TY +E+ ++ G+ER WA+
Sbjct:    2 RKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQICISRDRTLETMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPXXXXXXXXXXXXXXXXTTYRLENTLNYGLERVWAI 280          
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Match: A0A8J9WIR4_9CHLO (Coatomer subunit beta'-1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WIR4_9CHLO)

HSP 1 Score: 280 bits (715), Expect = 7.880e-84
Identity = 173/287 (60.28%), Postives = 211/287 (73.52%), Query Frame = 1
Query:    4 VQRKLNVRSERVKSVDLHPVEPWVLVGLYTGKAVIHDYEAKRVIKSFDISELPVRCARFVSRMQWIVAGSDDMMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHMWDWSRDWALSRSFEGHAHYVMMARFNPKDPHTFATASLDRTIRVWSTNSSAHNFMLEGHEAGVNCVSYYPGGDKPYLLSGADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLXXXXXXXXXXXXXXXKTYGVESVISMGMERCWAVDASAEGNKVACGFDEG 864
            +++K   RS+RVK VDLHP EPW+L  LY+G   I     + +IKSF+++ELPVR A+FV+R QWIV GSDDM +R          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +WDW + W  ++ FEGH+HYVM   FNPKD +TFA+ASLDRT++VWS      NF L+GHE GVNCV Y+ GGD+PYL+SGADD   K+WDYQT++CV +L  H HNVSA  FHP LP+ XXXXXXXXXXXX   TY +E+ I+ G+ER WA+ A    N VA G+DEG
Sbjct:   14 IKKKFTQRSDRVKGVDLHPTEPWLLANLYSGNVYIWSTADQSLIKSFEVTELPVRAAKFVARKQWIVCGSDDMYIRVYNYNTMDKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWDWDKGWTCNQIFEGHSHYVMQVVFNPKDTNTFASASLDRTVKVWSIGQPTPNFTLDGHEKGVNCVDYFQGGDRPYLISGADDKLAKVWDYQTKACVQSLEGHGHNVSAVCFHPELPIIXXXXXXXXXXXXHSTTYRLENTINYGLERLWALGACKGSNHVALGYDEG 300          
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Match: A0A2U1PZP0_ARTAN (Coatomer, beta' subunit n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PZP0_ARTAN)

HSP 1 Score: 273 bits (699), Expect = 1.660e-83
Identity = 180/271 (66.42%), Postives = 217/271 (80.07%), Query Frame = 1
Query:    4 VQRKLNVRSERVKSVDLHPVEPWVLVGLYTGKAVIHDYEAKRVIKSFDISELPVRCARFVSRMQWIVAGSDDMMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHMWDWSRDWALSRSFEGHAHYVMMARFNPKDPHTFATASLDRTIRVWSTNSSAHNFMLEGHEAGVNCVSYYPGGDKPYLLSGADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLXXXXXXXXXXXXXXXKTYGVESVISMGMERCWAV 816
            ++RKL  RSERVKSVDLHP EPW+L  LY+G   I DY+A+ + KSF+++ELPVR A+F++R QW+VAG+DDM   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   WDW + W  ++ FEGH+HYVM    NPKD +TFA+ASLDRTI++W+  S   NF L+ H  GVNCV Y+ GGDKPYL++G+DDHT K+WDYQT++CV TL  HTHNVSA  FHP LP XXXXXXXXXXXXXX  TY +E+ ++ G+ER WAV
Sbjct:    7 IKRKLAQRSERVKSVDLHPTEPWILTSLYSGTVCIWDYQAQAMAKSFEVTELPVRSAKFIARKQWVVAGADDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDWEKSWFCTQIFEGHSHYVMQVTINPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKTCVQTLEGHTHNVSAVCFHPELPXXXXXXXXXXXXXXXSTTYRLENTLNYGLERAWAV 277          
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Match: A0A2U1PZP9_ARTAN (Coatomer subunit beta' n=4 Tax=Asteraceae TaxID=4210 RepID=A0A2U1PZP9_ARTAN)

HSP 1 Score: 273 bits (699), Expect = 8.060e-82
Identity = 180/271 (66.42%), Postives = 217/271 (80.07%), Query Frame = 1
Query:    4 VQRKLNVRSERVKSVDLHPVEPWVLVGLYTGKAVIHDYEAKRVIKSFDISELPVRCARFVSRMQWIVAGSDDMMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHMWDWSRDWALSRSFEGHAHYVMMARFNPKDPHTFATASLDRTIRVWSTNSSAHNFMLEGHEAGVNCVSYYPGGDKPYLLSGADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLXXXXXXXXXXXXXXXKTYGVESVISMGMERCWAV 816
            ++RKL  RSERVKSVDLHP EPW+L  LY+G   I DY+A+ + KSF+++ELPVR A+F++R QW+VAG+DDM   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   WDW + W  ++ FEGH+HYVM    NPKD +TFA+ASLDRTI++W+  S   NF L+ H  GVNCV Y+ GGDKPYL++G+DDHT K+WDYQT++CV TL  HTHNVSA  FHP LP XXXXXXXXXXXXXX  TY +E+ ++ G+ER WAV
Sbjct:    7 IKRKLAQRSERVKSVDLHPTEPWILTSLYSGTVCIWDYQAQAMAKSFEVTELPVRSAKFIARKQWVVAGADDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDWEKSWFCTQIFEGHSHYVMQVTINPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKTCVQTLEGHTHNVSAVCFHPELPXXXXXXXXXXXXXXXSTTYRLENTLNYGLERAWAV 277          
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Match: A0A834LD81_RHOSS (Coatomer subunit beta' n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LD81_RHOSS)

HSP 1 Score: 273 bits (699), Expect = 1.090e-81
Identity = 143/294 (48.64%), Postives = 185/294 (62.93%), Query Frame = 1
Query:    4 VQRKLNVRSERVKSVDLHPVEPWVLVGLYTGKAVIHDYEAKR-------VIKSFDISELPVRCARFVSRMQWIVAGSDDMMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHMWDWSRDWALSRSFEGHAHYVMMARFNPKDPHTFATASLDRTIRVWSTNSSAHNFMLEGHEAGVNCVSYYPGGDKPYLLSGADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLXXXXXXXXXXXXXXXKTYGVESVISMGMERCWAVDASAEGNKVACGFDEG 864
            ++RKL  RSERVKSVDLHP EPW+L  LY+G   I +Y+++        ++KSF+++ELPVR A+F++R QW+VAG+DDM +R                                        + +WDW + W  ++ FEGH+HYVM   FNPKD +TFA+ASLDRTI++W+  S   NF L+ H  GVNCV Y+ GGDKPYL++G+DDHT K+WDYQT+SCV TL  HTHNVSA  FHP LP+XXXXXXXXXXXXXXX           G+ER WA+       +V  G+DEG
Sbjct:    7 IKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQETGHLSQTMVKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWDKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIXXXXXXXXXXXXXXXXXXXXXXXXXYGLERVWAIGCMKGSRRVVIGYDEG 300          
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Match: A0A1V9YT62_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YT62_9STRA)

HSP 1 Score: 256 bits (653), Expect = 5.090e-81
Identity = 125/287 (43.55%), Postives = 159/287 (55.40%), Query Frame = 1
Query:    4 VQRKLNVRSERVKSVDLHPVEPWVLVGLYTGKAVIHDYEAKRVIKSFDISELPVRCARFVSRMQWIVAGSDDMMVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHMWDWSRDWALSRSFEGHAHYVMMARFNPKDPHTFATASLDRTIRVWSTNSSAHNFMLEGHEAGVNCVSYYPGGDKPYLLSGADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLXXXXXXXXXXXXXXXKTYGVESVISMGMERCWAVDASAEGNKVACGFDEG 864
            +++KL  RSERVKSVDLHP EPWVL GLY G  ++ DY+ ++++KSF++S LPVR ARF++R QWIVA SDD+ +R                                        + MWDW ++W  ++ FEGH HYVMMA+FNPKD +TFATASLDRT+RVW   SS  +F LEGHE GVNC+ YYPGGDKPYL+SG+D                              HPRLPL                TY  E+ ++ GMER W +      NK+A G+DEG
Sbjct:    7 IKKKLTSRSERVKSVDLHPTEPWVLTGLYNGSVMLWDYDKQQLVKSFEVSTLPVRNARFIARKQWIVASSDDLQLRVFNYNTMDKVTAFDAHTDYIRYLEVHPVLPIVLSCADDMTVKMWDWDKNWLCTQVFEGHGHYVMMAKFNPKDTNTFATASLDRTVRVWGLGSSHPHFTLEGHERGVNCIDYYPGGDKPYLISGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPRLPLIISACEDGAVRMWHSTTYRAETTLNYGMERAWCLAGLEGSNKLAIGYDEG 293          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72395.17212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRX4_9STRA2.180e-8951.92Coatomer WD associated region-domain-containing pr... [more]
A0A5A8EFI0_CAFRO3.300e-8652.40Coatomer_WDAD domain-containing protein n=4 Tax=Sa... [more]
A0A7S1Y0J4_9STRA8.900e-8547.59Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S3HJI1_9STRA1.740e-8458.42Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A834WCP9_9FABA7.790e-8451.25Coatomer subunit beta'-2 n=1 Tax=Senna tora TaxID=... [more]
A0A8J9WIR4_9CHLO7.880e-8460.28Coatomer subunit beta'-1 n=1 Tax=Coccomyxa sp. Obi... [more]
A0A2U1PZP0_ARTAN1.660e-8366.42Coatomer, beta' subunit n=1 Tax=Artemisia annua Ta... [more]
A0A2U1PZP9_ARTAN8.060e-8266.42Coatomer subunit beta' n=4 Tax=Asteraceae TaxID=42... [more]
A0A834LD81_RHOSS1.090e-8148.64Coatomer subunit beta' n=1 Tax=Rhododendron simsii... [more]
A0A1V9YT62_9STRA5.090e-8143.55Uncharacterized protein (Fragment) n=1 Tax=Achlya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72395contigM-pyrifera_M_contig72395:260..1123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score272.3
Seed ortholog evalue2.6e-70
Seed eggNOG ortholog44056.XP_009039569.1
KEGG koko:K17302
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGsKOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons1
Model size864
Cds size864
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.5043843-CDS-M-pyrifera_M_contig72395:259..11231622816620.5043843-CDS-M-pyrifera_M_contig72395:259..1123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72395 260..1123 +
1692278081.3928974-CDS-M-pyrifera_M_contig72395:259..11231692278081.3928974-CDS-M-pyrifera_M_contig72395:259..1123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72395 260..1123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72395.17212.1prot_M-pyrifera_M_contig72395.17212.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72395 260..1123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72395.17212.1

>prot_M-pyrifera_M_contig72395.17212.1 ID=prot_M-pyrifera_M_contig72395.17212.1|Name=mRNA_M-pyrifera_M_contig72395.17212.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=288bp
MVQRKLNVRSERVKSVDLHPVEPWVLVGLYTGKAVIHDYEAKRVIKSFDI
SELPVRCARFVSRMQWIVAGSDDMMVRVFNYNTQERVAAFEAHMDYIRCI
EVHPTNPWILTTSDDMGLHMWDWSRDWALSRSFEGHAHYVMMARFNPKDP
HTFATASLDRTIRVWSTNSSAHNFMLEGHEAGVNCVSYYPGGDKPYLLSG
ADDHTIKIWDYQTRSCVTTLSEHTHNVSAAVFHPRLPLIISGSEDGTARL
WNAKTYGVESVISMGMERCWAVDASAEGNKVACGFDEG
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mRNA from alignment at M-pyrifera_M_contig72395:260..1123+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72395.17212.1 ID=mRNA_M-pyrifera_M_contig72395.17212.1|Name=mRNA_M-pyrifera_M_contig72395.17212.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig72395:260..1123+ (Macrocystis pyrifera P11B4 male)
ATGGTGCAGCGCAAGTTGAACGTGCGCTCTGAACGAGTCAAGAGCGTCGA CTTGCATCCAGTGGAACCATGGGTCCTTGTGGGACTTTATACTGGAAAGG CTGTGATCCACGACTACGAGGCAAAGCGTGTGATTAAGTCGTTTGACATT TCAGAACTTCCTGTACGCTGTGCACGGTTTGTTTCTCGAATGCAATGGAT TGTTGCTGGAAGTGATGACATGATGGTTCGTGTGTTCAACTACAACACAC AAGAACGTGTTGCTGCATTCGAAGCACACATGGACTACATTCGTTGCATC GAAGTACACCCAACAAATCCATGGATTTTGACAACTTCGGATGACATGGG CTTGCACATGTGGGACTGGTCTCGTGATTGGGCTTTGTCGCGATCGTTTG AAGGGCATGCACATTATGTGATGATGGCGCGATTCAACCCCAAGGATCCA CATACTTTTGCGACAGCAAGCTTGGATCGTACAATCCGCGTTTGGTCAAC AAATTCATCTGCGCACAACTTTATGTTGGAAGGACATGAAGCTGGAGTGA ATTGTGTGTCGTATTACCCTGGTGGTGACAAGCCCTACTTGCTGAGCGGA GCAGATGATCATACAATCAAGATTTGGGATTACCAAACACGTAGTTGTGT GACAACTTTGAGCGAACACACTCACAATGTGAGTGCAGCAGTGTTTCATC CTCGATTGCCATTGATCATCTCTGGGAGTGAAGATGGAACAGCGCGTTTG TGGAATGCCAAGACGTATGGTGTCGAATCGGTGATTTCGATGGGAATGGA ACGTTGTTGGGCTGTAGATGCAAGTGCAGAAGGAAACAAAGTTGCTTGTG GGTTTGACGAAGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72395:260..1123+

>mRNA_M-pyrifera_M_contig72395.17212.1 ID=mRNA_M-pyrifera_M_contig72395.17212.1|Name=mRNA_M-pyrifera_M_contig72395.17212.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1728bp|location=Sequence derived from alignment at M-pyrifera_M_contig72395:260..1123+ (Macrocystis pyrifera P11B4 male)
ATGGTGCAGCGCAAGTTGAACGTGCGCTCTGAACGAGTCAAGAGCGTCGA
CTTGCATCCAGTGGAACCATGGGTCCTTGTGGGACTTTATACTGGAAAGG
CTGTGATCCACGACTACGAGGCAAAGCGTGTGATTAAGTCGTTTGACATT
TCAGAACTTCCTGTACGCTGTGCACGGTTTGTTTCTCGAATGCAATGGAT
TGTTGCTGGAAGTGATGACATGATGGTTCGTGTGTTCAACTACAACACAC
AAGAACGTGTTGCTGCATTCGAAGCACACATGGACTACATTCGTTGCATC
GAAGTACACCCAACAAATCCATGGATTTTGACAACTTCGGATGACATGGG
CTTGCACATGTGGGACTGGTCTCGTGATTGGGCTTTGTCGCGATCGTTTG
AAGGGCATGCACATTATGTGATGATGGCGCGATTCAACCCCAAGGATCCA
CATACTTTTGCGACAGCAAGCTTGGATCGTACAATCCGCGTTTGGTCAAC
AAATTCATCTGCGCACAACTTTATGTTGGAAGGACATGAAGCTGGAGTGA
ATTGTGTGTCGTATTACCCTGGTGGTGACAAGCCCTACTTGCTGAGCGGA
GCAGATGATCATACAATCAAGATTTGGGATTACCAAACACGTAGTTGTGT
GACAACTTTGAGCGAACACACTCACAATGTGAGTGCAGCAGTGTTTCATC
CTCGATTGCCATTGATCATCTCTGGGAGTGAAGATGGAACAGCGCGTTTG
TGGAATGCCAAGACGTATGGTGTCGAATCGGTGATTTCGATGGGAATGGA
ACGTTGTTGGGCTGTAGATGCAAGTGCAGAAGGAAACAAAGTTGCTTGTG
GGTTTGACGAAGGAATGGTGCAGCGCAAGTTGAACGTGCGCTCTGAACGA
GTCAAGAGCGTCGACTTGCATCCAGTGGAACCATGGGTCCTTGTGGGACT
TTATACTGGAAAGGCTGTGATCCACGACTACGAGGCAAAGCGTGTGATTA
AGTCGTTTGACATTTCAGAACTTCCTGTACGCTGTGCACGGTTTGTTTCT
CGAATGCAATGGATTGTTGCTGGAAGTGATGACATGATGGTTCGTGTGTT
CAACTACAACACACAAGAACGTGTTGCTGCATTCGAAGCACACATGGACT
ACATTCGTTGCATCGAAGTACACCCAACAAATCCATGGATTTTGACAACT
TCGGATGACATGGGCTTGCACATGTGGGACTGGTCTCGTGATTGGGCTTT
GTCGCGATCGTTTGAAGGGCATGCACATTATGTGATGATGGCGCGATTCA
ACCCCAAGGATCCACATACTTTTGCGACAGCAAGCTTGGATCGTACAATC
CGCGTTTGGTCAACAAATTCATCTGCGCACAACTTTATGTTGGAAGGACA
TGAAGCTGGAGTGAATTGTGTGTCGTATTACCCTGGTGGTGACAAGCCCT
ACTTGCTGAGCGGAGCAGATGATCATACAATCAAGATTTGGGATTACCAA
ACACGTAGTTGTGTGACAACTTTGAGCGAACACACTCACAATGTGAGTGC
AGCAGTGTTTCATCCTCGATTGCCATTGATCATCTCTGGGAGTGAAGATG
GAACAGCGCGTTTGTGGAATGCCAAGACGTATGGTGTCGAATCGGTGATT
TCGATGGGAATGGAACGTTGTTGGGCTGTAGATGCAAGTGCAGAAGGAAA
CAAAGTTGCTTGTGGGTTTGACGAAGGA
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