mRNA_M-pyrifera_M_contig72392.17210.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72392.17210.1
Unique NamemRNA_M-pyrifera_M_contig72392.17210.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Match: A0A5A8ELZ9_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ELZ9_CAFRO)

HSP 1 Score: 170 bits (430), Expect = 1.860e-47
Identity = 74/119 (62.18%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 EKVFSNGQPNLFCNHYYWIPDPEQRWPDKINVCHTSRRSESKFYCSKAFYCNWTNNPFLIHKEWWIKEYVESRFKQWTRVDPFQDLESYMNWEPDSWNSLPWIVAQGDGLFKHVDRNNF 357
            E VF   QPNLFCNHYYWIP+PE+RWPDKI  C       +  YCSKA YCNWTNNP ++   WW  EYV+ RF      DP+  LE YMNWE  SWN  P++VAQGDGLFKHVDRNNF
Sbjct:  507 EAVFGR-QPNLFCNHYYWIPNPEERWPDKIWRC---MEKPTVMYCSKAKYCNWTNNPLIMATSWWRDEYVKKRFPAAKSHDPYNGLEPYMNWERGSWNDEPFVVAQGDGLFKHVDRNNF 621          
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Match: A0A7S4I188_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I188_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 4.690e-40
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 1
Query:   22 QPNLFCNHYYWIPDPEQRWPDKINVCHTSRRSESK-FYCSKAFYCNWTNNPFLIHKEWWIKEYVESRFKQWTRVDPFQDLESYMNWEPDSWNSLPWIVAQGDGLFKHVDRNNFG 360
            QPNL CN Y++I  P QRWP   +VC     SE+  FYC  + +CNWTNNPFLI+K WW + YV  +F Q    +P  +LE +MNW+  +WN   WIVA+GDG+FKH D NNFG
Sbjct:   43 QPNLLCNFYHFIDRPAQRWPQHFDVC-----SENPLFYCVDSEFCNWTNNPFLINKHWWFENYVH-KFAQINSAEPDFNLEGFMNWQQGAWNDRHWIVAEGDGMFKHCDANNFG 150          
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Match: A0A482RKJ7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RKJ7_9ARCH)

HSP 1 Score: 123 bits (309), Expect = 2.450e-34
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 1
Query:  118 ESKFYCSKAFYCNWTNNPFLIHKEWWIKEYVESRFKQWTRVDPFQDLESYMNWEPDSWNSLPWIVAQGDGLFKHVDRNNFGF 363
            E +  CS ++YCNWTNNP L    WW +EYV SRF ++TR DP+ DLESYMNWEP+SWN+  +IVAQGDGLFKH DR NFG+
Sbjct:   20 EPEMQCSDSYYCNWTNNPQLWKVSWWNEEYV-SRFDKFTRNDPWYDLESYMNWEPNSWNTRKFIVAQGDGLFKHSDRGNFGY 100          
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Match: A0A1Y1I871_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I871_KLENI)

HSP 1 Score: 96.7 bits (239), Expect = 7.530e-21
Identity = 45/136 (33.09%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 EKVFSNGQPNLFCNHYYWIPDPE---QRWPDKINVCHTS-----------RRSESKFYCSKAFYCNWTNNPFLIHKEWWIKEY---VESRFKQWTRVDPFQ---DLESYMNWEPDSWNSLPWIVAQGDGLFKHVDR 348
            E    N QPNL C  ++W+P+ E    ++   +  C               R+++ ++CS+A +C WTNNP+L+ +EWW + Y   V++   QW      Q   D+E    W P  WN+  W +A G+GLF HV+R
Sbjct:  364 EMEILNNQPNLMCCVHHWLPNAELASPKYQPYVYKCPALPKLNGDKHVIFERNQNDWWCSRAEHCLWTNNPYLLRREWWDRHYKPMVDALIDQWDGWTEHQRALDIEYLFGWNPAFWNAKAWTIAVGEGLFTHVER 499          
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Match: A0A813A747_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A747_9DINO)

HSP 1 Score: 82.4 bits (202), Expect = 2.770e-17
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 EKVFSNGQPNLFCNHYYWIPDPEQRWPDKINVCHTSRRSESKFYCSKAFYCNWTNNP 171
            E+VF   QPNL CN Y+WIP+P+Q WPDK  VC+     + KFYC+KA +CNWTNNP
Sbjct:  124 ERVFRQ-QPNLLCNFYHWIPNPDQIWPDKFYVCN----EDPKFYCTKAEFCNWTNNP 175          
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Match: R7QVC6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QVC6_CHOCR)

HSP 1 Score: 86.3 bits (212), Expect = 3.290e-17
Identity = 43/132 (32.58%), Postives = 62/132 (46.97%), Query Frame = 1
Query:    1 EKVFSNGQPNLFCNHYYWIPDPEQRWPDK--INVCHTSRRS--ESKFYCSKAFYCNWTNNPFLIHKEWWIKEYVESRFKQWT-------RVDPFQDLESYMNWEPDSWNSLPWIVAQGDGLFKHVDRNNFGF 363
            E      Q NL C  ++W  DP   +P +  +  C  + R   E   YCS + YC WTNNP +  K+W++ E  E   K++        +  PF D E Y NW   +W    + VA G GLF+H +  +  F
Sbjct:  362 ESSIMTQQKNLLCFVHHWQKDPTTMYPGEGIMRRCGGAERKVEEVDIYCSSSVYCQWTNNPAVFKKKWFMDEVGERYRKEYKIEFDKHGKTSPFLDFEYYTNWRSYAWTDKNFTVAVGTGLFRHAESEHQHF 493          
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Match: A0A5J4YZ91_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZ91_PORPP)

HSP 1 Score: 71.6 bits (174), Expect = 4.330e-12
Identity = 37/129 (28.68%), Postives = 55/129 (42.64%), Query Frame = 1
Query:   22 QPNLFCNHYYWIPDPEQRWPDK-INVCHTSRRSESK--------------FYCSKAFYCNWTNNPFLIHKEWWIKEYVESRFKQWTRVDPFQDLESYMNWEPDSWNSLPWIVAQGDGLFKHVDRNNFGF 363
            Q +L C  ++W+P P+Q +P   I  C   R                   ++C+ A +C WTNNP +  + W+++       K W       D ES+ N     W +L   VA G GLF HV+     F
Sbjct:  270 QSDLLCYAHHWLPRPDQHFPQHMITQCAVPRAEPPPLEQPGSEPDPDPELYFCAPAKFCQWTNNPSMFRRSWFLRTMALPYMKAWNSSS--SDFESWANSAQLKWATLNVTVALGGGLFSHVELKESRF 396          
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Match: A0A1G9NIN7_9FLAO (Glycosyl transferase family 2 n=1 Tax=Chryseobacterium taihuense TaxID=1141221 RepID=A0A1G9NIN7_9FLAO)

HSP 1 Score: 60.8 bits (146), Expect = 1.510e-8
Identity = 33/103 (32.04%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   49 YWIPDPEQRWPDKINVCHTSRRSESKFYCSKAFYCNWTNNPFLIHKEWWIKEYVESRFKQWTRVDPFQDLESYMNWEPDSWNSLPWIVAQGDGLFKHVDRNNF 357
            YW+ DP   +PDKI       + E +++ + + + NWTNNPFLI KE+++K       KQ++      + ++  +W    W+   + +AQG+GLF H D   +
Sbjct:  160 YWL-DPALEFPDKI-------QKEGEYFITTSRWANWTNNPFLIKKEFYLKT-----MKQFSGTSTSLE-KNIASW----WSKQNFKIAQGEGLFMHNDLKKY 244          
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Match: A0A0J7J1L2_9FLAO (Uncharacterized protein n=1 Tax=Chryseobacterium koreense CCUG 49689 TaxID=1304281 RepID=A0A0J7J1L2_9FLAO)

HSP 1 Score: 59.7 bits (143), Expect = 4.030e-8
Identity = 33/103 (32.04%), Postives = 51/103 (49.51%), Query Frame = 1
Query:   49 YWIPDPEQRWPDKINVCHTSRRSESKFYCSKAFYCNWTNNPFLIHKEWWIKEYVESRFKQWTRVDPFQDLESYMNWEPDSWNSLPWIVAQGDGLFKHVDRNNF 357
            YW+ DP   +PDKI       + +  ++ + A + NWTNNPFL+ KE++ K   +      T  + F+       W    W   P+ +AQG+GLF H D   +
Sbjct:  160 YWL-DPAAEFPDKI-------QKQGAYFITTARWANWTNNPFLLKKEFFAKNIAKIA----TSSEHFE--RDIAEW----WVKQPFKIAQGEGLFTHHDLEKY 244          
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Match: UPI001F19C310 (hypothetical protein n=1 Tax=Chryseobacterium sp. R2A-55 TaxID=2744445 RepID=UPI001F19C310)

HSP 1 Score: 58.5 bits (140), Expect = 1.050e-7
Identity = 32/99 (32.32%), Postives = 48/99 (48.48%), Query Frame = 1
Query:   49 YWIPDPEQRWPDKINVCHTSRRSESKFYCSKAFYCNWTNNPFLIHKEWWIKEYVESRFKQWTRVDPFQDLESYMNWEPDSWNSLPWIVAQGDGLFKHVD 345
            YW+ DP + +PDKI       + +  ++ + A + NWTNNPFL+ K+++ K   E        V           W    W   P+ +AQG+GLF H D
Sbjct:  159 YWL-DPAESFPDKI-------QKQGDYFTTTARWANWTNNPFLLKKDFYHKNIAE------IAVSSEHFERDIAEW----WVKQPFKIAQGEGLFMHHD 239          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72392.17210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A5A8ELZ9_CAFRO1.860e-4762.18Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S4I188_9EUKA4.690e-4052.63Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A482RKJ7_9ARCH2.450e-3464.63Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1Y1I871_KLENI7.530e-2133.09Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A813A747_9DINO2.770e-1759.65Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
R7QVC6_CHOCR3.290e-1732.58Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YZ91_PORPP4.330e-1228.68Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A1G9NIN7_9FLAO1.510e-832.04Glycosyl transferase family 2 n=1 Tax=Chryseobacte... [more]
A0A0J7J1L2_9FLAO4.030e-832.04Uncharacterized protein n=1 Tax=Chryseobacterium k... [more]
UPI001F19C3101.050e-732.32hypothetical protein n=1 Tax=Chryseobacterium sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72392contigM-pyrifera_M_contig72392:1..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.9e-15
Seed eggNOG ortholog72019.SARC_04194T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2EWHM@1,2SYBB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.4376013-CDS-M-pyrifera_M_contig72392:0..3661622816620.4376013-CDS-M-pyrifera_M_contig72392:0..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72392 1..366 +
1692278081.369756-CDS-M-pyrifera_M_contig72392:0..3661692278081.369756-CDS-M-pyrifera_M_contig72392:0..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72392 1..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72392.17210.1prot_M-pyrifera_M_contig72392.17210.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72392 1..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72392.17210.1

>prot_M-pyrifera_M_contig72392.17210.1 ID=prot_M-pyrifera_M_contig72392.17210.1|Name=mRNA_M-pyrifera_M_contig72392.17210.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
EKVFSNGQPNLFCNHYYWIPDPEQRWPDKINVCHTSRRSESKFYCSKAFY
CNWTNNPFLIHKEWWIKEYVESRFKQWTRVDPFQDLESYMNWEPDSWNSL
PWIVAQGDGLFKHVDRNNFGF*
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mRNA from alignment at M-pyrifera_M_contig72392:1..366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72392.17210.1 ID=mRNA_M-pyrifera_M_contig72392.17210.1|Name=mRNA_M-pyrifera_M_contig72392.17210.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig72392:1..366+ (Macrocystis pyrifera P11B4 male)
GAAAAAGTCTTCTCCAACGGCCAGCCCAACCTCTTCTGCAACCACTACTA CTGGATCCCGGACCCCGAGCAGCGCTGGCCAGACAAGATCAACGTCTGCC ACACCTCGCGCCGCTCCGAGTCAAAGTTCTACTGCTCCAAGGCCTTCTAC TGCAACTGGACAAACAACCCCTTCCTCATCCACAAGGAGTGGTGGATCAA AGAGTACGTCGAGTCCAGGTTCAAACAGTGGACCAGGGTCGACCCCTTCC AAGACCTGGAATCCTACATGAACTGGGAACCAGACTCCTGGAACTCGCTC CCCTGGATCGTCGCACAAGGGGACGGACTCTTCAAACACGTCGACAGAAA CAACTTTGGATTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72392:1..366+

>mRNA_M-pyrifera_M_contig72392.17210.1 ID=mRNA_M-pyrifera_M_contig72392.17210.1|Name=mRNA_M-pyrifera_M_contig72392.17210.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig72392:1..366+ (Macrocystis pyrifera P11B4 male)
GAAAAAGTCTTCTCCAACGGCCAGCCCAACCTCTTCTGCAACCACTACTA
CTGGATCCCGGACCCCGAGCAGCGCTGGCCAGACAAGATCAACGTCTGCC
ACACCTCGCGCCGCTCCGAGTCAAAGTTCTACTGCTCCAAGGCCTTCTAC
TGCAACTGGACAAACAACCCCTTCCTCATCCACAAGGAGTGGTGGATCAA
AGAGTACGTCGAGTCCAGGTTCAAACAGTGGACCAGGGTCGACCCCTTCC
AAGACCTGGAATCCTACATGAACTGGGAACCAGACTCCTGGAACTCGCTC
CCCTGGATCGTCGCACAAGGGGACGGACTCTTCAAACACGTCGACAGAAA
CAACTTTGGATTCTAGGAAAAAGTCTTCTCCAACGGCCAGCCCAACCTCT
TCTGCAACCACTACTACTGGATCCCGGACCCCGAGCAGCGCTGGCCAGAC
AAGATCAACGTCTGCCACACCTCGCGCCGCTCCGAGTCAAAGTTCTACTG
CTCCAAGGCCTTCTACTGCAACTGGACAAACAACCCCTTCCTCATCCACA
AGGAGTGGTGGATCAAAGAGTACGTCGAGTCCAGGTTCAAACAGTGGACC
AGGGTCGACCCCTTCCAAGACCTGGAATCCTACATGAACTGGGAACCAGA
CTCCTGGAACTCGCTCCCCTGGATCGTCGCACAAGGGGACGGACTCTTCA
AACACGTCGACAGAAACAACTTTGGATTCTAG
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