mRNA_M-pyrifera_M_contig72354.17207.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72354.17207.1
Unique NamemRNA_M-pyrifera_M_contig72354.17207.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Match: A0A7S3YSF5_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YSF5_9EUKA)

HSP 1 Score: 120 bits (300), Expect = 3.390e-30
Identity = 59/139 (42.45%), Postives = 94/139 (67.63%), Query Frame = 1
Query:    1 WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGETRGVASMVEVAELAAGGRGREGLVVVLQDLEDDVSVDGERLSASEIRDLNRGRAYLADVLRKNDIPLFSSLDDALRCVASRIKREHGTK 417
            WR+ +AIP L +  ++Y+NPQV +W P+LVE+EA AK VA   LFV++ +TR  +SM+E AE    GR    +V+V+Q++E+   ++G+ +   E++DLNRGRAY+ DV  ++ +PLF+S+  A+  +  R + E  TK
Sbjct:  171 WRKDIAIPQLEKAGISYYNPQVKDWTPDLVEIEAHAKAVANCLLFVIDPQTRATSSMLETAEYICSGRV---VVLVIQNIEEGCVIEGQSIIGRELKDLNRGRAYIKDVAERHGVPLFTSVQHAIDFIVRRYQ-ETSTK 305          
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Match: A0A7S1CLG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLG6_9STRA)

HSP 1 Score: 112 bits (279), Expect = 8.480e-29
Identity = 61/134 (45.52%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGETRGVASMVEVAELAAGGRGREGLVVVLQDLEDDVSVDGERLSASEIRDLNRGRAYLADVLRKNDIPLFSSLDDALRCVASRIKR 402
            WR   A+P L    V Y+NPQV EW   LV +EA AK  AA  LFV++ ETRGVASMVE +EL   GR    + +V ++L++  +VDG +L  +E +DLNRGRAYLADV  +  +P+  ++  A+  V    +R
Sbjct:   10 WRFDHAMPALDAAGVPYYNPQVAEWSEALVAIEAAAKHDAAALLFVISAETRGVASMVEASELITAGRK---VFLVCEELQEHATVDGTKLGKAERKDLNRGRAYLADVAHRRGVPVHKTVASAVDAVIGWSRR 140          
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Match: F2TZC5_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TZC5_SALR5)

HSP 1 Score: 117 bits (293), Expect = 9.670e-28
Identity = 65/134 (48.51%), Postives = 85/134 (63.43%), Query Frame = 1
Query:    1 WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGETRGVASMVEVAELAAGGRGREGLVVVLQDLEDDVSVDGERLSASEIRDLNRGRAYLADVLRKNDIPLFSSLDDALRCVASRIKR 402
            WRR +AIP+L + +V Y+NPQVDEW PEL++ E RAK+ A   LFV +  TRGVASMVEVA  AA     + LVV L  L     + GE+L   +I D+NRGRA L  +LR   +P+F+S+ DAL      + R
Sbjct:  512 WRRDVAIPFLEQHDVTYYNPQVDEWYPELMQEEERAKQAADVLLFVFDHTTRGVASMVEVAVNAA--TRPQSLVVALSPLPPHSVICGEQLDQRQIDDINRGRAILRTLLRDEGVPVFASIQDALTYTVCAVHR 643          
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Match: UPI001E1DBE20 (uncharacterized protein LOC123548397 isoform X2 n=4 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DBE20)

HSP 1 Score: 115 bits (288), Expect = 3.020e-27
Identity = 55/128 (42.97%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGETRGVASMVEVAELAAGGRGREGLVVVLQDLEDDVSVDGERLSASEIRDLNRGRAYLADVLRKNDIPLFSSLDDALRCV 384
            WR  +AIPY     + ++NPQV  W+PEL+E+EA+AK++A    FV++ +TR ++SM+EVA L A    R+ +V++ +  E ++ +DG+RLS SE+ DL +GR  L D++ +N IP+FS +  AL+C 
Sbjct:  142 WRSEIAIPYFKDHGITFYNPQVQHWKPELMELEAQAKQMADFLFFVIDTKTRAISSMIEVAYLVA--TQRQVVVIMCEYKEPNIEIDGQRLSDSEMLDLVKGRLILTDLVERNSIPIFSDIHKALKCT 267          
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Match: UPI001EB01C70 (uncharacterized protein LOC124138407 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB01C70)

HSP 1 Score: 114 bits (286), Expect = 5.930e-27
Identity = 58/132 (43.94%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    1 WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGETRGVASMVEVAELAAGGRGREGLVVVLQDLEDDVSVDGERLSASEIRDLNRGRAYLADVLRKNDIPLFSSLDDALRCVASRI 396
            WR+  AIPYL  Q V ++NPQV+ WRPEL+E+E RAK+ A    F+++ +TR V SMVEVA L      R  +V+V  D  + V +DGE  S+ E+ D+ R R  L D++ +N IP+F+++  AL+C A+ +
Sbjct:  161 WRQEKAIPYLKLQSVTFYNPQVNSWRPELIELEDRAKQAAQLLFFMIDNQTRAVVSMVEVAYLVGS---RRQVVLVYDDSWEKVVLDGESPSSRELGDIVRARTVLMDIVERNAIPVFTNIHKALQCTATGL 289          
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Match: A0A2C9M7W4_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9M7W4_BIOGL)

HSP 1 Score: 110 bits (275), Expect = 8.520e-27
Identity = 55/135 (40.74%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGETRGVASMVEVAELAAGGRGREGLVVVLQDLEDDVSVDGERLSASEIR-DLNRGRAYLADVLRKNDIPLFSSLDDALRCVASRIKR 402
            WR  +AIP+L ++ + ++NPQV+ WRPELVE+E RAK VA    FV++ +TR VAS+ E+A L   GR    ++VV      +V    E L+  + R D++R R  L D++ +N IP+F+ ++ AL+C A  +K+
Sbjct:  121 WRHDIAIPFLKKENITFYNPQVNTWRPELVELEDRAKNVAELLFFVIDNKTRSVASLCEIAFLVGCGRQ---IIVVFNSFNSEVHEVSEELTTEKERQDISRARNVLMDIIERNSIPVFADVEVALKCAALNLKQ 252          
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Match: A0A210R133_MIZYE (Uncharacterized protein n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R133_MIZYE)

HSP 1 Score: 112 bits (279), Expect = 5.220e-26
Identity = 52/134 (38.81%), Postives = 86/134 (64.18%), Query Frame = 1
Query:    1 WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGETRGVASMVEVAELAAGGRGREGLVVVLQDLEDDVSVDGERLSASEIRDLNRGRAYLADVLRKNDIPLFSSLDDALRCVASRIKR 402
            WR+  AIP+  +  + ++NPQV  WR ELVE+EARAK+ A    FV++ +TR + SM+E A L A    R  ++ ++ + + ++ + GE +  SE++DL RGR  L D++ +N IP+F+SL+ AL C  + + +
Sbjct:  146 WRQDTAIPFFKQHGITFYNPQVQSWREELVELEARAKQGADILFFVIDNQTRAITSMIETAYLVAT---RRQVIAIIHEYDKNIKICGEEVPNSEVKDLLRGRQILVDLVERNSIPVFTSLNTALTCTQTALDK 276          
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Match: A0A2T7NLB0_POMCA (Uncharacterized protein n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NLB0_POMCA)

HSP 1 Score: 111 bits (277), Expect = 9.570e-26
Identity = 60/133 (45.11%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    1 WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGETRGVASMVEVAELAAGGRGREGLVVVLQDLEDDV-SVDGERLSASEIRDLNRGRAYLADVLRKNDIPLFSSLDDALRCVASRI 396
            WR+  AIPYL +  + ++NPQV+ WRPEL+E+E RAK+VA   LFV+   TR V S+ E+A L    R    +VV+ +DL+ DV SV  E +S  E  DL RGR  L D++ +N IP+F +++ AL C++  I
Sbjct:  135 WRQQEAIPYLKQHNITFYNPQVNTWRPELIELEDRAKQVADLLLFVIENCTRAVVSLCEIAYLVGCQRQ---IVVMFKDLKGDVFSVCDETISEREKEDLRRGRQVLIDIIERNGIPVFDNMNKALDCLSLNI 264          
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Match: A0A2G8LP37_STIJA (Uncharacterized protein (Fragment) n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LP37_STIJA)

HSP 1 Score: 109 bits (272), Expect = 1.710e-25
Identity = 55/134 (41.04%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    1 WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGETRGVASMVEVAELAAGGRGREGLVVVLQDLEDDVSVDGERLSASEIRDLNRGRAYLADVLRKNDIPLFSSLDDALRCVASRIKR 402
            WR+  AIP L R  ++++NPQV++W PEL+E+E +AK  A   LFV+   TR +ASMVE A  +   R    L++V++ + D+V  +GE+L ASE++DL RG A+L D++ +  +P+F  L+ A+ C A  +++
Sbjct:  152 WRKDTAIPMLKRYNLSFYNPQVEDWGPELIEIEDQAKNNARLLLFVLENSTRSIASMVEAAFHSGDQRL---LMLVIKGIPDEV--EGEKLEASELQDLKRGHAFLCDLVERQCLPIFEDLETAIHCSAKVLQQ 280          
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Match: A0A8B8DIA0_CRAVI (uncharacterized protein LOC111127124 isoform X3 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DIA0_CRAVI)

HSP 1 Score: 110 bits (274), Expect = 2.420e-25
Identity = 57/144 (39.58%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    1 WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGETRGVASMVEVAELAAGGRGREGLVVVLQDLEDDVSVDGERLSASEIRDLNRGRAYLADVLRKNDIPLFSSLDDALRCVASRIKREHGTKLPPSE 432
            WR+  AIP+  ++ + ++NPQV  WRPEL+EVEA+AK  A   LFV++  TR V+SM+E A L A  RGR+ + V+      +V  + E++S+ E+ D+ RGR  L D++ +N +P+F  ++ AL+C A  +++     +P SE
Sbjct:  103 WRQEAAIPFYKKKGITFYNPQVQTWRPELMEVEAQAKESAELLLFVIDNRTRAVSSMIETAYLTA--RGRQVITVMDDYNSTEVYFNQEKVSSKELDDIMRGRQILVDLIERNALPVFKDINTALKCSAHVLQKN----VPVSE 240          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72354.17207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3YSF5_9EUKA3.390e-3042.45Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A7S1CLG6_9STRA8.480e-2945.52Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
F2TZC5_SALR59.670e-2848.51Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
UPI001E1DBE203.020e-2742.97uncharacterized protein LOC123548397 isoform X2 n=... [more]
UPI001EB01C705.930e-2743.94uncharacterized protein LOC124138407 n=1 Tax=Halio... [more]
A0A2C9M7W4_BIOGL8.520e-2740.74Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A210R133_MIZYE5.220e-2638.81Uncharacterized protein n=1 Tax=Mizuhopecten yesso... [more]
A0A2T7NLB0_POMCA9.570e-2645.11Uncharacterized protein n=3 Tax=Pomacea canalicula... [more]
A0A2G8LP37_STIJA1.710e-2541.04Uncharacterized protein (Fragment) n=1 Tax=Stichop... [more]
A0A8B8DIA0_CRAVI2.420e-2539.58uncharacterized protein LOC111127124 isoform X3 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72354contigM-pyrifera_M_contig72354:458..895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue2.4e-24
Seed eggNOG ortholog946362.XP_004997905.1
Preferred nameECSIT
KEGG koko:K04405,ko:K20235
KEGG Pathwayko04010,ko04013,map04010,map04013
Hectar predicted targeting categoryother localisation
GOsGO:0001704,GO:0001707,GO:0002376,GO:0003674,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007275,GO:0007369,GO:0007498,GO:0008150,GO:0008152,GO:0009653,GO:0009719,GO:0009790,GO:0009888,GO:0009889,GO:0009987,GO:0010033,GO:0010257,GO:0010468,GO:0010556,GO:0016020,GO:0016043,GO:0016491,GO:0016651,GO:0019219,GO:0019222,GO:0019866,GO:0022607,GO:0023052,GO:0030509,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0048332,GO:0048598,GO:0048646,GO:0048729,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051341,GO:0051716,GO:0055114,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071772,GO:0071773,GO:0071840,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.evolutionarily conserved signaling intermediate in Toll pathway
EggNOG OGsKOG3941@1,KOG3941@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons1
Model size438
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.2951176-CDS-M-pyrifera_M_contig72354:457..8951622816620.2951176-CDS-M-pyrifera_M_contig72354:457..895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72354 458..895 -
1692278081.2875898-CDS-M-pyrifera_M_contig72354:457..8951692278081.2875898-CDS-M-pyrifera_M_contig72354:457..895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72354 458..895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72354.17207.1prot_M-pyrifera_M_contig72354.17207.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72354 458..895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72354.17207.1

>prot_M-pyrifera_M_contig72354.17207.1 ID=prot_M-pyrifera_M_contig72354.17207.1|Name=mRNA_M-pyrifera_M_contig72354.17207.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
WRRCLAIPYLSRQEVAYFNPQVDEWRPELVEVEARAKRVAAQRLFVVNGE
TRGVASMVEVAELAAGGRGREGLVVVLQDLEDDVSVDGERLSASEIRDLN
RGRAYLADVLRKNDIPLFSSLDDALRCVASRIKREHGTKLPPSEQ*
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mRNA from alignment at M-pyrifera_M_contig72354:458..895-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72354.17207.1 ID=mRNA_M-pyrifera_M_contig72354.17207.1|Name=mRNA_M-pyrifera_M_contig72354.17207.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig72354:458..895- (Macrocystis pyrifera P11B4 male)
TGGCGTCGTTGCTTGGCGATTCCGTACCTGTCTCGGCAGGAGGTTGCGTA CTTCAACCCGCAGGTGGACGAGTGGCGGCCGGAGCTGGTGGAGGTGGAGG CCCGCGCGAAGCGGGTGGCGGCGCAACGGCTCTTTGTGGTGAACGGTGAG ACGAGAGGGGTGGCGAGTATGGTGGAGGTGGCCGAGTTGGCTGCTGGGGG CAGGGGCAGGGAGGGCCTGGTGGTGGTGCTGCAAGACCTCGAAGACGACG TGAGCGTCGACGGAGAACGGCTCTCTGCCTCGGAAATCAGAGACCTCAAC CGAGGCAGGGCATACCTCGCCGACGTCCTCCGCAAAAACGACATCCCACT CTTCTCCTCCCTCGACGATGCTCTCCGCTGTGTCGCTTCCAGAATCAAGA GAGAGCACGGAACAAAGCTACCGCCATCCGAACAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72354:458..895-

>mRNA_M-pyrifera_M_contig72354.17207.1 ID=mRNA_M-pyrifera_M_contig72354.17207.1|Name=mRNA_M-pyrifera_M_contig72354.17207.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig72354:458..895- (Macrocystis pyrifera P11B4 male)
TGGCGTCGTTGCTTGGCGATTCCGTACCTGTCTCGGCAGGAGGTTGCGTA
CTTCAACCCGCAGGTGGACGAGTGGCGGCCGGAGCTGGTGGAGGTGGAGG
CCCGCGCGAAGCGGGTGGCGGCGCAACGGCTCTTTGTGGTGAACGGTGAG
ACGAGAGGGGTGGCGAGTATGGTGGAGGTGGCCGAGTTGGCTGCTGGGGG
CAGGGGCAGGGAGGGCCTGGTGGTGGTGCTGCAAGACCTCGAAGACGACG
TGAGCGTCGACGGAGAACGGCTCTCTGCCTCGGAAATCAGAGACCTCAAC
CGAGGCAGGGCATACCTCGCCGACGTCCTCCGCAAAAACGACATCCCACT
CTTCTCCTCCCTCGACGATGCTCTCCGCTGTGTCGCTTCCAGAATCAAGA
GAGAGCACGGAACAAAGCTACCGCCATCCGAACAATGATGGCGTCGTTGC
TTGGCGATTCCGTACCTGTCTCGGCAGGAGGTTGCGTACTTCAACCCGCA
GGTGGACGAGTGGCGGCCGGAGCTGGTGGAGGTGGAGGCCCGCGCGAAGC
GGGTGGCGGCGCAACGGCTCTTTGTGGTGAACGGTGAGACGAGAGGGGTG
GCGAGTATGGTGGAGGTGGCCGAGTTGGCTGCTGGGGGCAGGGGCAGGGA
GGGCCTGGTGGTGGTGCTGCAAGACCTCGAAGACGACGTGAGCGTCGACG
GAGAACGGCTCTCTGCCTCGGAAATCAGAGACCTCAACCGAGGCAGGGCA
TACCTCGCCGACGTCCTCCGCAAAAACGACATCCCACTCTTCTCCTCCCT
CGACGATGCTCTCCGCTGTGTCGCTTCCAGAATCAAGAGAGAGCACGGAA
CAAAGCTACCGCCATCCGAACAATGA
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