mRNA_M-pyrifera_M_contig72349.17203.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72349.17203.1
Unique NamemRNA_M-pyrifera_M_contig72349.17203.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72349.17203.1 vs. uniprot
Match: A0A1Y1IHQ4_KLENI (Polyprenol reductase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHQ4_KLENI)

HSP 1 Score: 54.7 bits (130), Expect = 2.920e-5
Identity = 53/184 (28.80%), Postives = 82/184 (44.57%), Query Frame = 1 
Query:  145 LLEHFVLHVPRAKCSCE--EGREKGSVLPLAVYVGGILHYIGAPLTF----SPLIGEYEGAPEYFVVIGFIVWMLGEMLQTWGHWELAEMRRRR---NSSKVYVIPDDGPFGLLSIAYPHYLGEILVYIG-ITLSDG--IPFLGCAAWTTSNLLVTASRGWLGYEERFGKAEWKRKGPQWVIIP 660
            LL   ++H  R  C     E    GS + +A YV G+ +Y+ APLT     S  +    G   +  V+G ++++   + Q      LA +R R    +   VY IP    F    +A PHYL EIL+Y+G + +S+G  +      +W  +NL   A      Y  +F     +RK     I+P
Sbjct:  141 LLALMLVHTARRLCESTMLEKHAPGSRMHIASYVYGLCYYVAAPLTLYVHRSKKVKTVWGLFSWHEVLGGLLFIFANIKQHQLGQILAGLRHRSGPFDKIPVYRIPRGDWFEW--VACPHYLAEILLYLGLVVVSEGKDLTIWLMFSWVVANLTYAAQLARRWYVTKFEDYPKERK----AIVP 318
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BLAST of mRNA_M-pyrifera_M_contig72349.17203.1 vs. uniprot
Match: A0A3P3YJJ2_PLABS (S5A_REDUCTASE domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YJJ2_PLABS)

HSP 1 Score: 53.9 bits (128), Expect = 3.750e-5
Identity = 55/183 (30.05%), Postives = 77/183 (42.08%), Query Frame = 1 
Query:  103 RPGLVLFGMHVLKRLLEHFVLHVPRAKCSCEEGREKGSVLPLAVYVGGILHYIGAPLTFSPLIGEYEGAPEYFVVIGFIVWMLGEMLQTWGHWELAEMRRRRNSSKVYVIPDDGPFGLLSIAYPHYLGEILVYIGITLSDGIPFLGCAAWTTSNLLV---TASRGWLGYEERFGKAEWKRKGP 642
            R    L   H  KR LE   LH    K S   GR     L    +VGG        LT S    E   A  +   +G +VW++G++   + HW LA +R+  +    +V+P  G F    +A PHYL EI+ ++G  LS    +     W +S  L    TA+  W   +       WKR  P
Sbjct:   79 RAAAALMIAHYTKRCLECLFLH----KFS---GRTN---LWTIAFVGGGYTLSSVILT-STAPAEGSAAVAH---LGLLVWLVGQLGNFYHHWLLANLRKPGDMR--HVVPRGGLFAY--VASPHYLFEIVSWVGAALSISTWYAWAMVWFSSWYLAGRATATLDWYAKKGMRTPPGWKRLVP 243
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72349.17203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1Y1IHQ4_KLENI2.920e-528.80Polyprenol reductase n=1 Tax=Klebsormidium nitens ... [more]
A0A3P3YJJ2_PLABS3.750e-530.05S5A_REDUCTASE domain-containing protein n=2 Tax=Pl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72349contigM-pyrifera_M_contig72349:445..1116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.4
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog32264.tetur05g08590.1
KEGG rclassRC00145
KEGG koko:K12345
KEGG ReactionR02208,R02497,R08954,R10242
KEGG Pathwayko00140,map00140
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.3-oxo-5-alpha-steroid 4-dehydrogenase
EggNOG OGs39G0Y@33154,3BB66@33208,3D03E@33213,41ZRY@6656,KOG1640@1,KOG1640@2759
EC1.3.1.22,1.3.1.94
COG Functional cat.I
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size672
Cds size672
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.131554-CDS-M-pyrifera_M_contig72349:444..11161622816620.131554-CDS-M-pyrifera_M_contig72349:444..1116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72349 445..1116 -
1692278081.204979-CDS-M-pyrifera_M_contig72349:444..11161692278081.204979-CDS-M-pyrifera_M_contig72349:444..1116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72349 445..1116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72349.17203.1prot_M-pyrifera_M_contig72349.17203.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72349 445..1116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72349.17203.1

>prot_M-pyrifera_M_contig72349.17203.1 ID=prot_M-pyrifera_M_contig72349.17203.1|Name=mRNA_M-pyrifera_M_contig72349.17203.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=224bp
VPKVFFWHFYAVALVGVLGVGIGVEAFGWGGGNVRPGLVLFGMHVLKRLL
EHFVLHVPRAKCSCEEGREKGSVLPLAVYVGGILHYIGAPLTFSPLIGEY
EGAPEYFVVIGFIVWMLGEMLQTWGHWELAEMRRRRNSSKVYVIPDDGPF
GLLSIAYPHYLGEILVYIGITLSDGIPFLGCAAWTTSNLLVTASRGWLGY
EERFGKAEWKRKGPQWVIIPEVW*
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mRNA from alignment at M-pyrifera_M_contig72349:445..1116-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72349.17203.1 ID=mRNA_M-pyrifera_M_contig72349.17203.1|Name=mRNA_M-pyrifera_M_contig72349.17203.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig72349:445..1116- (Macrocystis pyrifera P11B4 male)
GTTCCAAAGGTTTTCTTTTGGCATTTTTATGCTGTTGCATTAGTAGGAGT
TTTGGGTGTTGGTATTGGGGTGGAAGCTTTTGGATGGGGTGGAGGAAACG
TGCGCCCAGGACTCGTTTTGTTTGGGATGCATGTTTTGAAGCGATTGCTG
GAACATTTTGTACTTCACGTGCCTCGTGCAAAGTGTTCTTGTGAAGAAGG
AAGAGAAAAAGGGAGTGTATTACCACTGGCTGTGTATGTAGGTGGGATAT
TGCATTACATTGGTGCTCCTTTGACGTTTTCTCCATTGATTGGCGAGTAT
GAAGGTGCTCCTGAATATTTTGTGGTGATTGGATTCATTGTATGGATGCT
CGGTGAAATGTTACAAACATGGGGACATTGGGAGCTTGCTGAAATGAGAA
GAAGACGAAATTCTTCAAAAGTCTACGTGATTCCCGACGATGGGCCATTT
GGTTTGCTCAGCATCGCATATCCACACTATCTCGGTGAAATCTTAGTCTA
TATTGGGATTACGTTGTCTGATGGGATCCCATTTCTCGGATGTGCTGCTT
GGACGACTTCAAATCTCCTGGTCACTGCAAGTAGAGGCTGGTTGGGGTAT
GAGGAGCGCTTTGGGAAGGCCGAGTGGAAGAGGAAAGGGCCTCAGTGGGT
AATCATCCCTGAAGTTTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72349:445..1116-

>mRNA_M-pyrifera_M_contig72349.17203.1 ID=mRNA_M-pyrifera_M_contig72349.17203.1|Name=mRNA_M-pyrifera_M_contig72349.17203.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1344bp|location=Sequence derived from alignment at M-pyrifera_M_contig72349:445..1116- (Macrocystis pyrifera P11B4 male)
GTTCCAAAGGTTTTCTTTTGGCATTTTTATGCTGTTGCATTAGTAGGAGT
TTTGGGTGTTGGTATTGGGGTGGAAGCTTTTGGATGGGGTGGAGGAAACG
TGCGCCCAGGACTCGTTTTGTTTGGGATGCATGTTTTGAAGCGATTGCTG
GAACATTTTGTACTTCACGTGCCTCGTGCAAAGTGTTCTTGTGAAGAAGG
AAGAGAAAAAGGGAGTGTATTACCACTGGCTGTGTATGTAGGTGGGATAT
TGCATTACATTGGTGCTCCTTTGACGTTTTCTCCATTGATTGGCGAGTAT
GAAGGTGCTCCTGAATATTTTGTGGTGATTGGATTCATTGTATGGATGCT
CGGTGAAATGTTACAAACATGGGGACATTGGGAGCTTGCTGAAATGAGAA
GAAGACGAAATTCTTCAAAAGTCTACGTGATTCCCGACGATGGGCCATTT
GGTTTGCTCAGCATCGCATATCCACACTATCTCGGTGAAATCTTAGTCTA
TATTGGGATTACGTTGTCTGATGGGATCCCATTTCTCGGATGTGCTGCTT
GGACGACTTCAAATCTCCTGGTCACTGCAAGTAGAGGCTGGTTGGGGTAT
GAGGAGCGCTTTGGGAAGGCCGAGTGGAAGAGGAAAGGGCCTCAGTGGGT
AATCATCCCTGAAGTTTGGTGAGTTCCAAAGGTTTTCTTTTGGCATTTTT
ATGCTGTTGCATTAGTAGGAGTTTTGGGTGTTGGTATTGGGGTGGAAGCT
TTTGGATGGGGTGGAGGAAACGTGCGCCCAGGACTCGTTTTGTTTGGGAT
GCATGTTTTGAAGCGATTGCTGGAACATTTTGTACTTCACGTGCCTCGTG
CAAAGTGTTCTTGTGAAGAAGGAAGAGAAAAAGGGAGTGTATTACCACTG
GCTGTGTATGTAGGTGGGATATTGCATTACATTGGTGCTCCTTTGACGTT
TTCTCCATTGATTGGCGAGTATGAAGGTGCTCCTGAATATTTTGTGGTGA
TTGGATTCATTGTATGGATGCTCGGTGAAATGTTACAAACATGGGGACAT
TGGGAGCTTGCTGAAATGAGAAGAAGACGAAATTCTTCAAAAGTCTACGT
GATTCCCGACGATGGGCCATTTGGTTTGCTCAGCATCGCATATCCACACT
ATCTCGGTGAAATCTTAGTCTATATTGGGATTACGTTGTCTGATGGGATC
CCATTTCTCGGATGTGCTGCTTGGACGACTTCAAATCTCCTGGTCACTGC
AAGTAGAGGCTGGTTGGGGTATGAGGAGCGCTTTGGGAAGGCCGAGTGGA
AGAGGAAAGGGCCTCAGTGGGTAATCATCCCTGAAGTTTGGTGA
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