prot_M-pyrifera_M_contig72309.17193.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig72309.17193.1
Unique Nameprot_M-pyrifera_M_contig72309.17193.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length145
Homology
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BLAST of mRNA_M-pyrifera_M_contig72309.17193.1 vs. uniprot
Match: A0A6B1AYI3_9ACTN (SAF domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AYI3_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 1.080e-17
Identity = 51/114 (44.74%), Postives = 65/114 (57.02%), Query Frame = 0 
Query:   32 SVDRLRREWQPIAPSWVITRPLEAGHVVEPGDVEARTLPPAALPSDAVEGSPVGRRLADSVATGEIVRNGRLDVAGATANASRIGDRRGALTLPSPTPHLEPGDRVDLYALLDG 145
            S    R +WQ     WV+T  LEAG  +   D+ +  LP A  P DA  G P G  L DS+ATGEIVR+GRL  A A   A+++G+  G LT+ +    L  GD VDLY L+DG
Sbjct:   51 SAATARAQWQTEIDGWVVTGDLEAGTTLTADDLASTRLPAAGTPHDATTGDPNGFTLRDSMATGEIVRDGRLTTA-AGPLAAQLGEAAGGLTIATDGTPLGAGDLVDLYGLIDG 163
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72309.17193.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6B1AYI3_9ACTN1.080e-1744.74SAF domain-containing protein n=1 Tax=Acidimicrobi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013974SAF domainSMARTSM00858SAF_3coord: 44..104
e-value: 1.7E-6
score: 37.6
IPR013974SAF domainPFAMPF08666SAFcoord: 46..102
e-value: 3.3E-7
score: 30.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..145
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 27..30
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.738
NoneNo IPR availableTMHMMTMhelixcoord: 12..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72309contigM-pyrifera_M_contig72309:693..1127 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72309.17193.1mRNA_M-pyrifera_M_contig72309.17193.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig72309 693..1127 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig72309.17193.1 ID=prot_M-pyrifera_M_contig72309.17193.1|Name=mRNA_M-pyrifera_M_contig72309.17193.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
VARLRHHRRGRAALAALLILGSLLMLSAERASVDRLRREWQPIAPSWVIT
RPLEAGHVVEPGDVEARTLPPAALPSDAVEGSPVGRRLADSVATGEIVRN
GRLDVAGATANASRIGDRRGALTLPSPTPHLEPGDRVDLYALLDG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013974SAF