mRNA_M-pyrifera_M_contig72308.17191.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72308.17191.1
Unique NamemRNA_M-pyrifera_M_contig72308.17191.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Match: A0A5A8EHB1_CAFRO (Beta_helix domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHB1_CAFRO)

HSP 1 Score: 179 bits (453), Expect = 6.040e-48
Identity = 116/273 (42.49%), Postives = 148/273 (54.21%), Query Frame = 1
Query:   16 SLSRAGLGWSWTYA-TLQSATNNTVAFNKLHDVFTGSSGVSSLEDGGCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASSYVTLEKNIVWQTKD-GSHIHYGNENLWKNNIFADSGAYDCSSS-GCQPALFRSSRHSSGEG--AISSSNLQSNIFLLTQNKSELFYSTISDAFANFTLDYNLYWSQAATPTPSQLTFPPSQSPTTFPQWQAQGKDVHSMIADPMFDSLFPT-FQLAQNSPAFKLGFEQIDTSQYGPR 816
            S +    GW+W Y+ T   A    + FN LHDVF+G      L DGGC+Y LG        + GT + NN C+ V + G    YG WG Y D+ SS +    N+   TK  G H HYG  N ++NNI A  GA+ C  +  C  A  RSS    G G  ++SS +   NI LL Q  S  F++      AN T   N+YWS   T   + L F PSQSP +F QWQ  GKDVHS++ADP+F +     F+LA +SPA KLGF+QID S  GPR
Sbjct:  449 SYTAVSSGWTWGYSPTTVRAVR--ITFNDLHDVFSG-----KLSDGGCVYTLGA-------QPGTLVDNNQCWNVHSRG----YGGWGYYTDEGSSDIIFTNNLATVTKSAGVHQHYGLNNRFENNILAFPGAWPCDDAPNCDNAGIRSSVAGPGNGKYSLSSFSFVRNIVLLNQPFSAPFFTVAKTGLANDTFASNVYWS---TTNKTDLPFGPSQSPVSFAQWQQSGKDVHSVVADPLFGNPAERDFRLAPDSPALKLGFQQIDFSTNGPR 700          
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Match: A9UPB5_MONBE (Uncharacterized protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UPB5_MONBE)

HSP 1 Score: 154 bits (388), Expect = 4.380e-39
Identity = 107/276 (38.77%), Postives = 143/276 (51.81%), Query Frame = 1
Query:   13 FSLSRAGLGWSWTYATLQSATNNTVAFNKLHDVFTGSSGVSSLEDGGCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASSYVTLEKNIVWQTK-DGSHIHYGNENLWKNNIFADSGAYDCSSSGCQPALFRSSRH------SSGEGAISSSNLQSNIFLLTQNKSELFYSTISDAFANFTLDYNLYWSQAATPTPSQLTFPPSQSPTTFPQWQAQGKDVHSMIADPMFDS--LFPTFQLAQNSPAFKLGFEQIDTSQYGP 813
            FS +   LGW+WTYA   +  NN +A N +  +     G   L D GCIY LG        + GTKI +N+C  V ++    +YG WGLY DQAS  +TL  NIV+QTK  G H H+G  N++ NN+FAD   ++C          RSS+H      S+ +G  SS     NI  L  N   +FYSTI   F N T D N Y+        S + FP  ++ T   QW+  G+D+HS+IADP+F +  L     L   SPA   GF+ I+ S  GP
Sbjct:  380 FSYTGVSLGWTWTYAETSNR-NNVIALNNIDTI-----GQHLLSDMGCIYLLG-------HQPGTKIDHNVCARVYSY----NYGGWGLYTDQASRDITLTNNIVYQTKCAGLHQHFGLNNIFMNNVFADVDTWNCDGG------IRSSQHAGVCNASAPDGPCSSFTFFRNILYL--NDGPVFYSTIPTGFENMTFDNNTYYKLDH----SSVVFPEKRNLT---QWRQHGQDMHSIIADPLFTNPNLDDFSHLRPASPALARGFQPINISLVGP 623          
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Match: F2U2T3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U2T3_SALR5)

HSP 1 Score: 154 bits (388), Expect = 4.890e-39
Identity = 97/238 (40.76%), Postives = 131/238 (55.04%), Query Frame = 1
Query:  127 GVSSLEDGGCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASSYVTLEKNIVWQTK-DGSHIHYGNENLWKNNIFADSGAYDCSSSGCQPALFRSSRH------SSGEGAISSSNLQSNIFLLTQNKSELFYSTISDAFANFTLDYNLYWSQAATPTPSQLTFPPSQSPTTFPQWQAQGKDVHSMIADPMF-DSLFPTF-QLAQNSPAFKLGFEQIDTSQYGP 813
            G+S L D GC+Y LG        + GT+++NN+C+ V  +    +YG WGLY D+ SSY+ L  NIV+ TK  G H HYG +N + NNI A+     C       A  RSS+H      ++ +GA SS    +NI  +     ++F +TI   F N T D N YW    TP    + FP  +   TF QW+A+GKDVHS+IADP F D     + +   NSPA KLGF+ I+ SQ GP
Sbjct:  417 GLSLLSDMGCVYTLGK-------QPGTQVINNICHTVYTY----NYGGWGLYTDEGSSYIQLRDNIVFHTKCAGVHQHYGTDNTFSNNILAEVNTLTCD------AAIRSSQHPGNCTAAAPDGACSSFTFDTNIVYVRDY--DVFDATIPTGFQNMTFDNNTYWKGDKTP----IVFPEKK---TFKQWKAEGKDVHSVIADPQFVDGTHNDWSRFNSNSPALKLGFKPINISQVGP 628          
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Match: A0A2U3KM29_9BACT (Putative pectin lyase n=1 Tax=Candidatus Sulfotelmatobacter kueseliae TaxID=2042962 RepID=A0A2U3KM29_9BACT)

HSP 1 Score: 137 bits (345), Expect = 4.940e-33
Identity = 95/267 (35.58%), Postives = 139/267 (52.06%), Query Frame = 1
Query:   22 SRAGLGWSWTYATLQSATNNTVAFNKLHDVFTGSSGVSSLEDGGCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASSYVTLEKNIVWQTKD-GSHIHYGNENLWKNNIFADSGAYDCSSSGCQPALFRSSRHSSGEGAISSSNLQSNIFLLTQNKSELFYSTISDAFANFTLDYNLYWSQAATPTPSQLTFPPSQSPTTFPQWQAQGKDVHSMIADPMFDSLFP-TFQLAQNSPAFKLGFEQIDTSQYGPR 816
            S  G+GW+W Y    +A +N + FN +HD+     G   + D GC+Y LG+       + GT + NN C+ V     + SYG WG+Y D+ SS + +E N+V++T+D G H HYG  N+ +NNIFA            Q +  R +   +G     S +++ NIF+   +   L      D   NF  D NLY+  A +   S + F       +F +WQ  G+DVHS++ADP+F  L    F L   SPA K+GF+ ID S+ GPR
Sbjct:  464 SGIGVGWTWGYLPT-AAHSNVIEFNHIHDI-----GRGVMADLGCVYLLGV-------QPGTVVRNNFCHDVTR--PDASYGGWGIYTDEGSSEIVIENNLVFRTQDAGFHQHYGQNNVVRNNIFALG----------QGSQLRRTDEEAGH----SFDVEHNIFVW--DSGTLLDQEWKDN--NFLFDNNLYF-YAGSGGGSAIRF----GDLSFEEWQKNGQDVHSIVADPLFVDLQKGNFSLQPESPALKIGFKPIDLSEVGPR 692          
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Match: A0A7C5FX05_9BACT (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5FX05_9BACT)

HSP 1 Score: 136 bits (343), Expect = 9.750e-33
Identity = 96/269 (35.69%), Postives = 142/269 (52.79%), Query Frame = 1
Query:   13 FSLSRAGLGWSWTYATLQSATNNTVAFNKLHDVFTGSSGVSSLEDGGCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASSYVTLEKNIVWQTKDGS-HIHYGNENLWKNNIFADSGAYDCSSSGCQPALFRSSRHSSGEGAISSSNLQSNIFLLTQNKSELFYSTISDAFANFTLDYNLYWSQAATPTPSQLTFPPSQSPTTFPQW-QAQGKDVHSMIADPMF-DSLFPTFQLAQNSPAFKLGFEQIDTSQYG 810
            F  +   +GW+W Y   + A +N +A+N +H +     G   L D G IY LGI       + GT + +N+ + + ++    +YG WGLY D+ SS + +EKN+V++TK G  H HYG EN  +NNIFA +  +    +  +P +              S   + NI +   N S L  S   D   NF +DYNLYW+ A      ++ FP +    TF +W + +G+D HS+IADP+F D     F+L +NSPAFKLGFE  D  + G
Sbjct:  469 FYYTGISVGWTWGYGRSE-AHHNEIAYNHVHTI-----GQGVLSDMGGIYTLGI-------QPGTHVHHNVFHDIRSY----TYGGWGLYTDEGSSGIVMEKNLVFRTKTGGFHQHYGRENKIQNNIFAFAEEHQLQRTRTEPHI--------------SFFFERNI-VYWDNPSPLLGSNWKDD--NFRMDYNLYWNAAG----HEIRFPDN---LTFEEWKEKRGQDRHSLIADPLFVDPKAEDFRLRENSPAFKLGFEPFDYWEAG 696          
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Match: A0A831ULK7_9BACT (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A831ULK7_9BACT)

HSP 1 Score: 135 bits (340), Expect = 2.950e-32
Identity = 102/265 (38.49%), Postives = 137/265 (51.70%), Query Frame = 1
Query:   22 SRAGLGWSWTYATLQSATNNTVAFNKLHDVFTGSSGVSSLEDGGCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASSYVTLEKNIVWQTKDGS-HIHYGNENLWKNNIFADSGAYDCSSSGCQPALFRSSRHSSGEGAISSSNLQSNIFLLTQNKSELFYSTISDAFANFTLDYNLYWSQAATPTPSQLTFPPSQSPTTFPQWQAQGKDVHSMIADPMF-DSLFPTFQLAQNSPAFKLGFEQIDTSQYG 810
            S   +GWSW YA   SA +N + FN +H V     G   L D G IY LG+S        GT I NN+ +  D+       G WG+Y D+ SS + +E NIV+ T  G+ H HYG EN+ +NN+FA S +        +  L RS R       I     + NI L   N  +L  ST  +   N+ LD+N YW  +      +L F    +  T  QWQA+G DVHS++ADP+F D+    F+L  +SPAF LGF  IDTS+ G
Sbjct:  379 SGLSIGWSWGYAP-SSANHNIIEFNHVHHV-----GHGQLSDMGVIYTLGVSP-------GTVIRNNVFH--DSMSNPRVSGGWGVYTDEGSSDILVENNIVYNTLTGTFHQHYGRENVLRNNVFAYSHS--------RGQLIRS-REEDHVSFI----FERNIVLF--NNGQLLGSTWKNG--NWKLDHNCYWDTSG----YELDF----AGRTLEQWQAEGHDVHSIVADPLFVDAQNADFRLKPDSPAFDLGFVPIDTSEVG 603          
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Match: A0A7Y2AJN8_9BACT (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2AJN8_9BACT)

HSP 1 Score: 135 bits (340), Expect = 3.020e-32
Identity = 95/261 (36.40%), Postives = 131/261 (50.19%), Query Frame = 1
Query:   34 LGWSWTYATLQSATNNTVAFNKLHDVFTGSSGVSSLEDGGCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASSYVTLEKNIVWQTKDGS-HIHYGNENLWKNNIFADSGAYDCSSSGCQPALFRSSRHSSGEGAISSSNLQSNIFLLTQNKSELFYSTISDAFANFTLDYNLYWSQAATPTPSQLTFPPSQSPTTFPQWQAQGKDVHSMIADPMF-DSLFPTFQLAQNSPAFKLGFEQIDTSQYG 810
            +GW W YA    A  N + FN +H +     G   L D G +Y LG S        GT + NN+ + + +WG    YG WGLY D+ S+ + +EKN+V++TK G  H HYG EN+ +NNIFA S  Y    S  +  L              S  L+ N+  +  +  ELF+ + SD   N  L  NLYW     P           +  +F QWQA GKD  S++ADP+F D+    F+L +NSPA K+GF   D S+ G
Sbjct:  420 VGWRWGYAE-SLAVRNRIEFNHIHHL-----GWGWLSDMGGVYTLGPSP-------GTSVSNNVIHDILSWG----YGGWGLYNDEGSTGIVMEKNLVYRTKSGGYHQHYGRENIIRNNIFAYSRQYQLKRSRVEDHL--------------SFTLERNV--VAWDSGELFHGSWSDD--NVKLHDNLYWRSDGHPI--------KINGKSFEQWQATGKDTGSIVADPLFVDAPHDDFRLKENSPAAKIGFVPFDYSKAG 637          
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Match: A0A252DNF1_9NOSO (Uncharacterized protein n=2 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A252DNF1_9NOSO)

HSP 1 Score: 134 bits (336), Expect = 8.200e-32
Identity = 97/269 (36.06%), Postives = 142/269 (52.79%), Query Frame = 1
Query:   13 FSLSRAGLGWSWTYATLQSATNNTVAFNKLHDVFTGSSGVSSL-EDGGCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASSYVTLEKNIVWQTKDGS-HIHYGNENLWKNNIFADSGAYDCSSSGCQPALFRSSRHSSGEGAISSSNLQSNIFLLTQNKSELFYSTISDAFANFTLDYNLYWSQAATPTPSQLTFPPSQSPTTFPQWQAQGKDVHSMIADPMFDSLFPT---FQLAQNSPAFKLGFEQIDTSQ 804
            F  +   +GW+W Y    +  NN + FN +H +   S+G   L  D G IY LG+       + GT I  NL + +DA+    SYG+WG+YLD+ SS + +E N++++T+DG  H+HYG +NL +NNIFA            + A  R SR    E  IS    + NI    Q   +L  S      +N+ LDYNLYW  +         F       ++ +WQ +G+D +S+IA+P+F  + P    F+L  NSPAFKLGF+Q D +Q
Sbjct:  469 FYYTGISVGWTWGYQASPTK-NNVIEFNHIHHIGRLSNGDGPLLNDKGAIYTLGV-------QPGTVIRGNLIHDIDAY----SYGAWGIYLDEGSSQILVENNLIYRTRDGGFHLHYGKDNLIRNNIFAFG----------RVAQIRRSRP---ESHISF-KFERNIIYWKQG--QLLDSDGQWDDSNYLLDYNLYWYGSK----GNFHF----GKLSWQEWQQKGRDKNSLIANPLF--VAPDRDDFRLKPNSPAFKLGFKQTDYNQ 699          
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Match: A0A8I2A3N6_9BACT (Right-handed parallel beta-helix repeat-containing protein n=2 Tax=unclassified Verrucomicrobia TaxID=417295 RepID=A0A8I2A3N6_9BACT)

HSP 1 Score: 131 bits (330), Expect = 5.030e-31
Identity = 96/268 (35.82%), Postives = 137/268 (51.12%), Query Frame = 1
Query:   34 LGWSWTYATLQSATNNTVAFNKLHDVFTGSSGVSSLEDGGCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASSYVTLEKNIVWQTKD-GSHIHYGNENLWKNNIFADSGAYDCSSSGCQPALFRSSRHSSGEGAISSSNLQSNIFLLTQNKSELFYST---ISDAFAN--FTLDYNLYWSQAATPTPSQLTFPPSQSPTTFPQWQAQGKDVHSMIADPMF-DSLFPTFQLAQNSPAFKLGFEQIDTSQYGPR 816
            +GW+W Y       +N + FN LHD+     G + L D G IY LGI       + GT I NNL + V A+    +YG WGLY D+ SSY+TLE N+V++ K  G H HYG EN+ +NNIFA +  +          L RS      E  IS           T  ++ +++ +   +  ++ N  F LD N+Y+       P  + F    +  T  +WQA+G D+HS++ADPMF +S    F+L  +SPA KL F  ID  + G R
Sbjct:  453 VGWNWGYQETPCR-DNLIEFNHLHDI-----GQNLLSDMGAIYTLGI-------QRGTVIRNNLIHDVHAF----TYGGWGLYTDEGSSYITLENNVVYRCKSAGFHEHYGRENVVRNNIFAFNTEHQ---------LMRSRE----EDHIS----------FTFERNIVYFDSGDLLGGSWTNNRFRLDNNVYFDGRPEARPDSMRF----AGATLAEWQARGHDIHSVVADPMFYNSRAYNFRLNLDSPALKLEFNPIDLRRVGLR 676          
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Match: A0A7V6EC61_9BACT (Beta_helix domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V6EC61_9BACT)

HSP 1 Score: 125 bits (314), Expect = 1.580e-30
Identity = 95/273 (34.80%), Postives = 137/273 (50.18%), Query Frame = 1
Query:    4 HPLFSLSRAGLGWSWTYATLQSATNNTVAFNKLHDVFTGSSGVSSLEDGGCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASSYVTLEKNIVWQTKD-GSHIHYGNENLWKNNIFADSGAYDCSSSGCQPALFRSSRHSSGEGAISSSNLQSNIFLLTQNKSELFYSTISDAFANFTLDYNLYWSQAATPTPSQLTFPPSQSPTTFPQWQAQGKDVHSMIADPMF-DSLFPTFQLAQNSPAFKLGFEQIDTSQYGPR 816
            H LF  +   +GW+W Y       +N + FN L+++     G + L D G IY LGI       + GT I NNL + ++A+    +YG WG+Y D+ SSY+ +E NIV+  K  G H HYG EN+ +NNIFA +          +  L R+      E  IS    ++ ++    N   L  S  S+    F +DYN+Y+       P++  F          QW+A+G DVHS+I DP+F D     F L  +SPA K GF+QID +  G R
Sbjct:   75 HDLF-YTAISVGWNWGYQETPCH-DNRIEFNHLYNI-----GKALLSDMGGIYTLGI-------QKGTVIRNNLIHDIEAF----TYGGWGIYPDEGSSYILIENNIVYNAKSAGFHQHYGRENIIRNNIFAFNK---------ENQLMRTRE----ENHISFVFERNIVYF---NSGSLLGSNWSND--KFKMDYNIYYDTRIGNDPAKYRF----GKDNLEQWRARGHDVHSVIMDPLFVDPEKYNFLLRPDSPALKFGFKQIDINDIGIR 307          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72308.17191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EHB1_CAFRO6.040e-4842.49Beta_helix domain-containing protein n=5 Tax=Cafet... [more]
A9UPB5_MONBE4.380e-3938.77Uncharacterized protein n=1 Tax=Monosiga brevicoll... [more]
F2U2T3_SALR54.890e-3940.76Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A2U3KM29_9BACT4.940e-3335.58Putative pectin lyase n=1 Tax=Candidatus Sulfotelm... [more]
A0A7C5FX05_9BACT9.750e-3335.69Right-handed parallel beta-helix repeat-containing... [more]
A0A831ULK7_9BACT2.950e-3238.49Right-handed parallel beta-helix repeat-containing... [more]
A0A7Y2AJN8_9BACT3.020e-3236.40Right-handed parallel beta-helix repeat-containing... [more]
A0A252DNF1_9NOSO8.200e-3236.06Uncharacterized protein n=2 Tax=unclassified Nosto... [more]
A0A8I2A3N6_9BACT5.030e-3135.82Right-handed parallel beta-helix repeat-containing... [more]
A0A7V6EC61_9BACT1.580e-3034.80Beta_helix domain-containing protein n=1 Tax=Verru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72308contigM-pyrifera_M_contig72308:73..894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score152.1
Seed ortholog evalue3.7e-34
Seed eggNOG ortholog81824.XP_001742609.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3KA@1,2SAMW@2759,3ABWA@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size822
Cds size822
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816619.541823-CDS-M-pyrifera_M_contig72308:72..8941622816619.541823-CDS-M-pyrifera_M_contig72308:72..894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72308 73..894 +
1692278080.8963141-CDS-M-pyrifera_M_contig72308:72..8941692278080.8963141-CDS-M-pyrifera_M_contig72308:72..894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72308 73..894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72308.17191.1prot_M-pyrifera_M_contig72308.17191.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72308 73..894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72308.17191.1

>prot_M-pyrifera_M_contig72308.17191.1 ID=prot_M-pyrifera_M_contig72308.17191.1|Name=mRNA_M-pyrifera_M_contig72308.17191.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=274bp
FHPLFSLSRAGLGWSWTYATLQSATNNTVAFNKLHDVFTGSSGVSSLEDG
GCIYHLGISSTHGNFETGTKIVNNLCYAVDAWGGEGSYGSWGLYLDQASS
YVTLEKNIVWQTKDGSHIHYGNENLWKNNIFADSGAYDCSSSGCQPALFR
SSRHSSGEGAISSSNLQSNIFLLTQNKSELFYSTISDAFANFTLDYNLYW
SQAATPTPSQLTFPPSQSPTTFPQWQAQGKDVHSMIADPMFDSLFPTFQL
AQNSPAFKLGFEQIDTSQYGPRE*
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mRNA from alignment at M-pyrifera_M_contig72308:73..894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72308.17191.1 ID=mRNA_M-pyrifera_M_contig72308.17191.1|Name=mRNA_M-pyrifera_M_contig72308.17191.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig72308:73..894+ (Macrocystis pyrifera P11B4 male)
TTCCATCCTCTCTTCTCTCTCTCGCGCGCAGGTTTGGGCTGGTCGTGGAC GTATGCGACGCTGCAGTCTGCGACGAACAACACAGTGGCGTTCAACAAGC TCCATGATGTATTCACAGGGAGTAGTGGGGTGAGTAGCCTTGAAGACGGG GGGTGCATTTACCACCTTGGAATTTCATCCACACACGGCAACTTTGAAAC GGGCACAAAAATTGTCAACAATCTGTGCTATGCAGTGGATGCGTGGGGTG GGGAAGGAAGTTATGGGAGCTGGGGTTTGTATTTGGACCAGGCATCATCG TACGTCACATTGGAGAAGAACATTGTTTGGCAAACCAAGGACGGCAGTCA CATCCACTATGGCAACGAGAACTTGTGGAAGAATAACATTTTCGCAGACT CTGGAGCTTACGATTGCTCCTCTAGCGGTTGCCAACCAGCTCTCTTCCGT TCTTCTCGTCATTCCAGTGGAGAAGGAGCTATATCATCCTCCAACTTGCA AAGCAACATCTTCCTCCTCACGCAGAACAAGTCAGAACTCTTCTACTCCA CAATCTCCGATGCGTTTGCAAACTTTACCCTTGACTACAACTTGTACTGG TCACAAGCCGCCACCCCCACACCTTCTCAACTCACCTTCCCACCCTCTCA ATCCCCAACCACCTTTCCACAATGGCAAGCGCAAGGGAAAGACGTCCACA GCATGATTGCAGATCCCATGTTCGATTCACTCTTCCCAACCTTTCAACTC GCACAGAATTCTCCAGCGTTCAAGCTGGGGTTTGAGCAAATCGACACATC ACAATACGGACCACGAGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72308:73..894+

>mRNA_M-pyrifera_M_contig72308.17191.1 ID=mRNA_M-pyrifera_M_contig72308.17191.1|Name=mRNA_M-pyrifera_M_contig72308.17191.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1644bp|location=Sequence derived from alignment at M-pyrifera_M_contig72308:73..894+ (Macrocystis pyrifera P11B4 male)
TTCCATCCTCTCTTCTCTCTCTCGCGCGCAGGTTTGGGCTGGTCGTGGAC
GTATGCGACGCTGCAGTCTGCGACGAACAACACAGTGGCGTTCAACAAGC
TCCATGATGTATTCACAGGGAGTAGTGGGGTGAGTAGCCTTGAAGACGGG
GGGTGCATTTACCACCTTGGAATTTCATCCACACACGGCAACTTTGAAAC
GGGCACAAAAATTGTCAACAATCTGTGCTATGCAGTGGATGCGTGGGGTG
GGGAAGGAAGTTATGGGAGCTGGGGTTTGTATTTGGACCAGGCATCATCG
TACGTCACATTGGAGAAGAACATTGTTTGGCAAACCAAGGACGGCAGTCA
CATCCACTATGGCAACGAGAACTTGTGGAAGAATAACATTTTCGCAGACT
CTGGAGCTTACGATTGCTCCTCTAGCGGTTGCCAACCAGCTCTCTTCCGT
TCTTCTCGTCATTCCAGTGGAGAAGGAGCTATATCATCCTCCAACTTGCA
AAGCAACATCTTCCTCCTCACGCAGAACAAGTCAGAACTCTTCTACTCCA
CAATCTCCGATGCGTTTGCAAACTTTACCCTTGACTACAACTTGTACTGG
TCACAAGCCGCCACCCCCACACCTTCTCAACTCACCTTCCCACCCTCTCA
ATCCCCAACCACCTTTCCACAATGGCAAGCGCAAGGGAAAGACGTCCACA
GCATGATTGCAGATCCCATGTTCGATTCACTCTTCCCAACCTTTCAACTC
GCACAGAATTCTCCAGCGTTCAAGCTGGGGTTTGAGCAAATCGACACATC
ACAATACGGACCACGAGAGTGATTCCATCCTCTCTTCTCTCTCTCGCGCG
CAGGTTTGGGCTGGTCGTGGACGTATGCGACGCTGCAGTCTGCGACGAAC
AACACAGTGGCGTTCAACAAGCTCCATGATGTATTCACAGGGAGTAGTGG
GGTGAGTAGCCTTGAAGACGGGGGGTGCATTTACCACCTTGGAATTTCAT
CCACACACGGCAACTTTGAAACGGGCACAAAAATTGTCAACAATCTGTGC
TATGCAGTGGATGCGTGGGGTGGGGAAGGAAGTTATGGGAGCTGGGGTTT
GTATTTGGACCAGGCATCATCGTACGTCACATTGGAGAAGAACATTGTTT
GGCAAACCAAGGACGGCAGTCACATCCACTATGGCAACGAGAACTTGTGG
AAGAATAACATTTTCGCAGACTCTGGAGCTTACGATTGCTCCTCTAGCGG
TTGCCAACCAGCTCTCTTCCGTTCTTCTCGTCATTCCAGTGGAGAAGGAG
CTATATCATCCTCCAACTTGCAAAGCAACATCTTCCTCCTCACGCAGAAC
AAGTCAGAACTCTTCTACTCCACAATCTCCGATGCGTTTGCAAACTTTAC
CCTTGACTACAACTTGTACTGGTCACAAGCCGCCACCCCCACACCTTCTC
AACTCACCTTCCCACCCTCTCAATCCCCAACCACCTTTCCACAATGGCAA
GCGCAAGGGAAAGACGTCCACAGCATGATTGCAGATCCCATGTTCGATTC
ACTCTTCCCAACCTTTCAACTCGCACAGAATTCTCCAGCGTTCAAGCTGG
GGTTTGAGCAAATCGACACATCACAATACGGACCACGAGAGTGA
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