mRNA_M-pyrifera_M_contig72.17144.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72.17144.1
Unique NamemRNA_M-pyrifera_M_contig72.17144.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72.17144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72contigM-pyrifera_M_contig72:47439..48684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816615.4478273-CDS-M-pyrifera_M_contig72:47438..474861622816615.4478273-CDS-M-pyrifera_M_contig72:47438..47486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72 47439..47486 -
1692278078.8901162-CDS-M-pyrifera_M_contig72:47438..474861692278078.8901162-CDS-M-pyrifera_M_contig72:47438..47486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72 47439..47486 -
1622816615.461046-CDS-M-pyrifera_M_contig72:48510..486841622816615.461046-CDS-M-pyrifera_M_contig72:48510..48684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72 48511..48684 -
1692278078.9068046-CDS-M-pyrifera_M_contig72:48510..486841692278078.9068046-CDS-M-pyrifera_M_contig72:48510..48684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72 48511..48684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72.17144.1prot_M-pyrifera_M_contig72.17144.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72 47439..48684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72.17144.1

>prot_M-pyrifera_M_contig72.17144.1 ID=prot_M-pyrifera_M_contig72.17144.1|Name=mRNA_M-pyrifera_M_contig72.17144.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
HPARNDSNPDSNTDRGDCKSGERPDLGGEGEAVAVGVGAVGDQDVRTRAG
ETSTSGSAVPMPGKIGSSPHTDW*
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mRNA from alignment at M-pyrifera_M_contig72:47439..48684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72.17144.1 ID=mRNA_M-pyrifera_M_contig72.17144.1|Name=mRNA_M-pyrifera_M_contig72.17144.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1246bp|location=Sequence derived from alignment at M-pyrifera_M_contig72:47439..48684- (Macrocystis pyrifera P11B4 male)
CATCCTGCTCGCAATGATTCAAACCCCGATAGCAACACCGACCGAGGCGA
TTGTAAGTCCGGAGAACGCCCTGATCTGGGCGGTGAAGGAGAAGCCGTGG
CCGTCGGTGTTGGGGCTGTGGGTGACCAAGATGTACGAACGAGAGCAGGC
GAGACGTCGACGTCAGGGTCGGCGGTAAGCTCTCGGGATGATTGTGTGGG
TACGCCCGAACAAGCCAGTGTGCATCGTTGTCAATTCATGGTGTCGAACT
AGAAAGTGTACCCCTTTCTCAGGCTTCCCCTCCCGACGCGTGCGCCTGTT
TTTTTCGGGGGAGCTCTGTGCTAATAGTAAGTCAGTACCAAGTCACCCAG
AAACTGATCTTGAGAACACATCAAAGTGCAGCAATCAACCCTATCGGCCT
GGATGTACAACGAATATCGTGTGAAACGTGAATGGTGCTTCGACGATGTC
GCGTATTTCCTCAGTTAACCCCTTTAGAACTGCCAATCCAATTGTGGAGA
CAAATCACTTGGGATTAGAGTCGTATTTACAGTAGGTACATGTACTGTGC
AGCACGACATGGTTTTAGGGTCCCCTATCCTGAGATGCGTCTTCCCCGCC
AATTGTTACGAATGAAGGATGACATCAGGGTCCGACGTAAAGTGAAGTGA
AGTGGTTGAGATTTTGTGTTTTTCAGTCGCTCATCCGCACCATAAACGCC
ACAACCAGGTCCTGATGTAATAGCAAGCAGCCCCCCCCCCTCCCGGAGCA
GGAATTAGTCCGGGGTCACCAGAAAATAGGGGAATATAATAAAATGTATC
TAAGGGTGTCCTTTGCTGAGACTACGTTCCTGGCATGATAGGGATAATCG
GCAGAGCATCCCTGTGCATGGTCGTGTGGTAAGTACTCACCTGCCAGTAG
ACTGACCTACCTGGTTAATTCGCACGAAAGTGCACCCTTTGGTACCTGTC
TATCCCTATCGATACGGGTATGTACTTTCCTATGCAAGGTGCCTAATTAC
ACTCACGTACAATGCTTTCCTTCCAAGTGGTACAAGATGGAGTCGCTTCC
TGTATCATGTAAATAGCATTTTGTTTAATGTTGGGTTTGGGCTACTCCGC
CACACTCGCCTATACTCAGCTGTACCTATTTGACGTAGCCTATGTTTTGT
GCGCTTGCGCTGCTGGTCCTCTGTTGCTTTCTGGTGGATGTTCAGCAGGT
GCCGATGCCAGGGAAGATCGGATCAAGCCCTCACACCGACTGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72:47439..48684-

>mRNA_M-pyrifera_M_contig72.17144.1 ID=mRNA_M-pyrifera_M_contig72.17144.1|Name=mRNA_M-pyrifera_M_contig72.17144.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig72:47439..48684- (Macrocystis pyrifera P11B4 male)
CATCCTGCTCGCAATGATTCAAACCCCGATAGCAACACCGACCGAGGCGA
TTGTAAGTCCGGAGAACGCCCTGATCTGGGCGGTGAAGGAGAAGCCGTGG
CCGTCGGTGTTGGGGCTGTGGGTGACCAAGATGTACGAACGAGAGCAGGC
GAGACGTCGACGTCAGGGTCGGCGCATCCTGCTCGCAATGATTCAAACCC
CGATAGCAACACCGACCGAGGCGATTGTAAGTCCGGAGAACGCCCTGATC
TGGGCGGTGAAGGAGAAGCCGTGGCCGTCGGTGTTGGGGCTGTGGGTGAC
CAAGATGTACGAACGAGAGCAGGCGAGACGTCGACGTCAGGGTCGGCGGT
GCCGATGCCAGGGAAGATCGGATCAAGCCCTCACACCGACTGGTAAGTGC
CGATGCCAGGGAAGATCGGATCAAGCCCTCACACCGACTGGTAA
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