mRNA_M-pyrifera_M_contig718.17104.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig718.17104.1
Unique NamemRNA_M-pyrifera_M_contig718.17104.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 307 bits (786), Expect = 7.970e-98
Identity = 152/156 (97.44%), Postives = 155/156 (99.36%), Query Frame = 1 
Query:    1 MTAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 468
            MT IDP+TVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTIT+GFTHAIS+GNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  409 MTVIDPSTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITSGFTHAISSGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 564
[Close]
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 257 bits (656), Expect = 9.750e-77
Identity = 126/155 (81.29%), Postives = 136/155 (87.74%), Query Frame = 1 
Query:    4 TAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 468
            T +DP+++DDKDYYGNKRLE AGQLISLLFEDLFKRFN +LKR AD  L+K N A  +DI   L GS  IT GF HAISTGNWV+KRFK+DRQGVTQVLSRLS+IS LGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL
Sbjct:  382 TVLDPSSLDDKDYYGNKRLESAGQLISLLFEDLFKRFNGDLKRYADTCLAKQNHATPWDISGMLAGSMNITQGFIHAISTGNWVVKRFKMDRQGVTQVLSRLSYISCLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 536
[Close]
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A482SPL4_9ARCH (DNA-directed RNA polymerase subunit beta n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPL4_9ARCH)

HSP 1 Score: 252 bits (644), Expect = 3.080e-76
Identity = 123/155 (79.35%), Postives = 138/155 (89.03%), Query Frame = 1 
Query:    4 TAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 468
            T  D + +DDKDYYGNKR+ELAG L+SLLFEDLFKRFNS+LKR ADMVLSKPNRA  FDI KF+ G T IT GF HAISTG+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  132 TVQDRSLLDDKDYYGNKRIELAGSLLSLLFEDLFKRFNSDLKRQADMVLSKPNRAGGFDIVKFIRGDT-ITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 285
[Close]
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A7S2WKY6_9STRA (DNA-directed RNA polymerase (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKY6_9STRA)

HSP 1 Score: 234 bits (596), Expect = 7.000e-75
Identity = 117/156 (75.00%), Postives = 131/156 (83.97%), Query Frame = 1 
Query:    1 MTAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 468
            M  +     DDKDYYGNKRLELAG L+SLLFEDLFK FN +LKR AD VLSK NRA AFD+ K +  S TIT G   AISTGNWVLKRF++DR GVTQVLSRLS++S+LGMMTRV+SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   79 MVHLGKEPYDDKDYYGNKRLELAGNLLSLLFEDLFKHFNRDLKRQADQVLSKANRAQAFDVIKCIR-SDTITMGMVMAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 233
[Close]
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A2P4YIY6_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A2P4YIY6_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.950e-74
Identity = 121/156 (77.56%), Postives = 137/156 (87.82%), Query Frame = 1 
Query:    1 MTAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 468
             T  D T +DDKDYYGNKRLELAGQL+SLLFEDLFKRFNS+LKR ADMVLSKPNRA+ FDI K +  + TIT GF HA+STGNW LKRF++DR GVT VLSRLS++S+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:   37 FTDKDRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRASVFDILKCIR-TDTITQGFYHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 191
[Close]
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.370e-74
Identity = 121/155 (78.06%), Postives = 136/155 (87.74%), Query Frame = 1 
Query:    4 TAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 468
            T  D + +DDKDYYGNKRLELAG LISLLFEDLFKRFNS+LKR  DM+LSKPNRA  FD+ KF+   T IT GF HAISTG+WVLKRF++DR GVTQVLSRLS+IS+LGMMTRV SQF+K RKVSGPR+LQPSQWGM+CPADTPEGE+CGLVKNL
Sbjct:  237 TVRDRSLLDDKDYYGNKRLELAGSLISLLFEDLFKRFNSDLKRQVDMILSKPNRAGGFDVMKFMRADT-ITQGFVHAISTGSWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVSSQFEKTRKVSGPRSLQPSQWGMMCPADTPEGEACGLVKNL 390
[Close]
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: M4C4J1_HYAAE (DNA-directed RNA polymerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4J1_HYAAE)

HSP 1 Score: 246 bits (629), Expect = 2.540e-74
Identity = 121/156 (77.56%), Postives = 137/156 (87.82%), Query Frame = 1 
Query:    1 MTAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 468
             T  D T +DDKDYYGNKRLELAGQL+SLLFEDLFKRFNS+LKR ADMVLSKPNRA+ FDI K +  + TIT GF HA+STGNW LKRF++DR GVT VLSRLS++S+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  346 FTDKDRTRLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNSDLKRQADMVLSKPNRASVFDIIKCVR-TDTITQGFFHALSTGNWTLKRFRMDRAGVTHVLSRLSYMSALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 500
[Close]
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A7S3PBU7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBU7_9STRA)

HSP 1 Score: 233 bits (595), Expect = 3.490e-74
Identity = 113/148 (76.35%), Postives = 132/148 (89.19%), Query Frame = 1 
Query:   25 VDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 468
            +DDKDYYGNKRLELAG L+SLLFEDLFK F+ +LKR AD+VLSKPN A AFD+ K +   T ITNG  +AI+TGNWVLKRF++DR GVTQVLSRLS++S+LGMMTR++SQF+K RKVSGPR+LQPSQWGMLCPADTPEGE+CGLVKNL
Sbjct:  105 LDDKDYYGNKRLELAGNLLSLLFEDLFKTFSKDLKRQADLVLSKPNLAQAFDVTKTIRPDT-ITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 251
[Close]
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A2G8KFE2_STIJA (DNA-directed RNA polymerase n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KFE2_STIJA)

HSP 1 Score: 232 bits (591), Expect = 4.010e-74
Identity = 113/152 (74.34%), Postives = 131/152 (86.18%), Query Frame = 1 
Query:   13 DPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 468
            D   VDD+DYYGNKRLELAGQLISLLFEDLFK+FNSELK+ AD ++ KP+RAA FD+ K +     ITNG   AISTGNW LKRFK++R GVTQ+LSRLS+IS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   81 DSFKVDDRDYYGNKRLELAGQLISLLFEDLFKKFNSELKKIADQIIPKPSRAALFDVVKHMR-QDKITNGLNTAISTGNWSLKRFKMERAGVTQILSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 231
[Close]
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Match: A0A822DRV6_9NEOB (DNA-directed RNA polymerase n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822DRV6_9NEOB)

HSP 1 Score: 229 bits (584), Expect = 5.630e-74
Identity = 114/148 (77.03%), Postives = 130/148 (87.84%), Query Frame = 1 
Query:   25 VDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVLSKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVLSRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESCGLVKNL 468
            VDD+DYYGNKRLELAGQL+SLLFEDLFK+FNSE+K+ AD V+ K  RAA FD+ K +     ITNG  +AISTGNW LKRFK+DRQGVTQVLSRLSFIS+LGMMTR+ SQF+K RKVSGPR+LQPSQWGMLCP+DTPEGE+CGLVKNL
Sbjct:   14 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMR-QDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNL 159
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig718.17104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAF8_9PHAE7.970e-9897.44DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A835Z565_9STRA9.750e-7781.29DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A482SPL4_9ARCH3.080e-7679.35DNA-directed RNA polymerase subunit beta n=1 Tax=a... [more]
A0A7S2WKY6_9STRA7.000e-7575.00DNA-directed RNA polymerase (Fragment) n=2 Tax=Euc... [more]
A0A2P4YIY6_9STRA1.950e-7477.56DNA-directed RNA polymerase subunit beta (Fragment... [more]
A0A7S3H3I2_9STRA2.370e-7478.06DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
M4C4J1_HYAAE2.540e-7477.56DNA-directed RNA polymerase n=1 Tax=Hyaloperonospo... [more]
A0A7S3PBU7_9STRA3.490e-7476.35DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]
A0A2G8KFE2_STIJA4.010e-7474.34DNA-directed RNA polymerase n=1 Tax=Stichopus japo... [more]
A0A822DRV6_9NEOB5.630e-7477.03DNA-directed RNA polymerase n=1 Tax=Ranitomeya imi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig718contigM-pyrifera_M_contig718:12482..16183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.7
Seed ortholog evalue1.1e-64
Seed eggNOG ortholog115417.EPrPW00000024458
Preferred namePOLR3B
KEGG rclassRC02795
KEGG koko:K03010,ko:K03021
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0051239,GO:0051240,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed RNA polymerase
EggNOG OGs1MDZF@121069,COG0085@1,KOG0215@2759
Ec32 ortholog descriptionDNA-directed RNA polymerase, subunit 2
Ec32 orthologEc-00_002160.1
EC2.7.7.6
COG Functional cat.K
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons4
Model size471
Cds size471
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig718.17104.1prot_M-pyrifera_M_contig718.17104.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig718 12482..16183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816613.4777014-CDS-M-pyrifera_M_contig718:12481..125171622816613.4777014-CDS-M-pyrifera_M_contig718:12481..12517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig718 12482..12517 +
1692278077.82173-CDS-M-pyrifera_M_contig718:12481..125171692278077.82173-CDS-M-pyrifera_M_contig718:12481..12517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig718 12482..12517 +
1622816613.4902575-CDS-M-pyrifera_M_contig718:13234..133821622816613.4902575-CDS-M-pyrifera_M_contig718:13234..13382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig718 13235..13382 +
1692278077.8327491-CDS-M-pyrifera_M_contig718:13234..133821692278077.8327491-CDS-M-pyrifera_M_contig718:13234..13382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig718 13235..13382 +
1622816613.5048094-CDS-M-pyrifera_M_contig718:14368..144781622816613.5048094-CDS-M-pyrifera_M_contig718:14368..14478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig718 14369..14478 +
1692278077.8443904-CDS-M-pyrifera_M_contig718:14368..144781692278077.8443904-CDS-M-pyrifera_M_contig718:14368..14478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig718 14369..14478 +
1622816613.5164757-CDS-M-pyrifera_M_contig718:16006..161831622816613.5164757-CDS-M-pyrifera_M_contig718:16006..16183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig718 16007..16183 +
1692278077.8659286-CDS-M-pyrifera_M_contig718:16006..161831692278077.8659286-CDS-M-pyrifera_M_contig718:16006..16183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig718 16007..16183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig718.17104.1

>prot_M-pyrifera_M_contig718.17104.1 ID=prot_M-pyrifera_M_contig718.17104.1|Name=mRNA_M-pyrifera_M_contig718.17104.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
MTAIDPTTVDDKDYYGNKRLELAGQLISLLFEDLFKRFNSELKRNADMVL
SKPNRAAAFDIGKFLEGSTTITNGFTHAISTGNWVLKRFKVDRQGVTQVL
SRLSFISSLGMMTRVDSQFQKERKVSGPRALQPSQWGMLCPADTPEGESC
GLVKNLG
back to top

mRNA from alignment at M-pyrifera_M_contig718:12482..16183+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig718.17104.1 ID=mRNA_M-pyrifera_M_contig718.17104.1|Name=mRNA_M-pyrifera_M_contig718.17104.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3702bp|location=Sequence derived from alignment at M-pyrifera_M_contig718:12482..16183+ (Macrocystis pyrifera P11B4 male)
ATGACCGCCATCGACCCTACCACCGTCGACGACAAGGTGTGGCGGTAAAA
AATGCTGGAACCAATCTTGCTACAAGCTTGGATCCATCTTGTTGGGTCAC
GATTTTACCTTCAAGATTATCTTACGCTGCCGCCGATCGCTTACTAGTAG
TGAAAATGCTCGATTTGATGAGGCCTCCTGCCCCGGCCGGTGGTCCCACT
CATACTTCGTTGTATTATTTAATTGCCTCATGACCACCGGCCTGGTGTTG
CGTTGCCTCACCCTAACGTACCCCTTAGGGTGTACCTCGGGTGCATTTGT
TGGTGTCGGAATGGATGTCGTACCTTCCGTTCTCTATTGTGTGCTTTGCA
TGCCGTGGATTTCGGGGGGGGGGGTTCAAATTGTGGGTCGGACAGGTAGA
TTTTTGTTCGTTCTTTGGGTGATAGATACCTTTGGGGATGGACTTGAGAA
AAAGAGTATTGCATGCCATCGACACCCTGTACACCGTGTGCTTTGCGTGC
CACAGTCGTGACCGGCAGCTTCGTCTTCGCCGTCTAGCGCTGCTTCCGCA
CACGCCACTGCTGTCGCGGTTCATGTGCTGTCGTAGTTTTTGGAGAGCGA
GCGCTCCGCGGGTTGTACCTCAGCCCAGGATGTTCAGTGTATCTTCTAGT
CTGTGATGTTTGGTGTATTGTTTAGTCTTGGGTCCTTGACTGTGGTTTGC
TTTTGTTGTTGTCGTTGCCGTCATTGCTGTTGTGTCAATCGTGTGCTGCC
CAGGACTACTACGGGAACAAGCGTCTGGAGCTAGCTGGGCAGCTGATCTC
TCTGCTGTTCGAAGATCTCTTCAAGAGATTCAACAGCGAGCTCAAGAGGA
ACGCCGACATGGTGTTGTCCAAACCTAATCGCGCCGCAGCGTTTGACATA
GGTGACTTGATCCACCGGTAACCGACGTTCCGCCTATACCATGTGCTCGC
ACTACCCACTGCCAGCTAGTCCAACGGAGGCCTGAAATATTTCTCGCGGT
TGGTTCGGCACGTATAAACGCGGTTGGGCAAGTATGGCATACTTTGCTGT
GTTCCTTCCCTCCGATCGTGGACTTGGATGTACTGGTGTGTGCTCTCTCG
CCAGCGGTACTGTTCTCGATGTTTTTGCATCACACCAGTCAAGCAGTTTA
CGATGAGGTGCGTTGTTTAGAGGGGGCTTTTCGGCGAACAGCGGTGGCGT
GTAGTGCGGGAGGAAGGCGCCAGCGAGACAAACGCGGTGACAAAATAACA
GTGTTTGAGCAGTGCAGAATTGTAGCGCTACGTGTGTGACAAGGCGCAAG
ACAAACGATACCGGACGGGGTTCCTCCTGTCGGAACCTTGTTCGTGCTGG
TGCTGTTTCCATTTTTAATGCTTTGCGCATGATCCCCCGCGACGTTGTCC
GCATCCGCTGTGGGTCACCCCCCTCCTCGCGTCCCTTCGCAGTAGTGTTT
TTACGATTTGGCCCAGCCTCGCCACAGTGGGTGATAATCACACTAAGAAA
AACATTGCACATCTGCCAATCTCACCGGTAGAGCACAGAGCGTAGCCCAA
GTTTTGGTCTCCGCGAAACCCAGTAATAATATGTCGCGCAGCATGTTCTC
GTTTCTGTCATCAACGTAAGGCGCTCGTGATCAGCGCGCCGTGCAGATTT
TCTTGCCTAGATCCGCTCCTTTCTCTCAAACCCCCCAACTCGATTCCGCG
TTTTAGTGTAACGTTCGCCGTGTATATGTCCTGCGTTACATTGATCATGA
AAAACGCTGCAGCTCTGACTAGAACCGTAATAGTTTGTCGCGTGCAGACG
TAGGGGTGTCTTACGCGTTGTTTTGTGTTCTTAAAATGGGTTGTTTGTTG
TGCGCGGTATGGTCGTCTCGGGCGATGCTGCGAACAGGCAAGTTCTTGGA
AGGGTCCACAACCATCACGAACGGCTTCACCCACGCCATTTCCACCGGCA
ACTGGGTTCTGAAGAGGTTCAAGGTCGACAGACAGGGGGTTACTCAGGTG
CAGAACACGTATTCTAGGGGCCTGCTTTTTATTTTTTTAGGTGCTTCTCG
TGATCTTGGCGACCACAGTAAGAACAGCAAGCCGTTCGTTCTGCTGTCTA
GTACCTGGCGCCTTGCTTTGCTTCCATTGTTGTTTCCTGGTTTCATATGT
TTCCTCGAAAAAAAAACTGATATTTTTATTGTACAGTTCCGCGTTTTTTC
ACAGCTGCTTTGGGGTTCGTGGAGACAAAAGCCTTGCTCGCCAAGTCATC
GAAGGTAGGTAGACCGCGGAAGCCACATGTTGGCGTCAGAAATTACCGTA
ATCAAAATCATCAGGGTTATTGCCACCCTAAGGGCGCTCGACGAAAAGAC
ACAATGACATCACACACTCCTAAAAGGTCAAAATATAAAATAGGAAAACA
GTAGTGCAGTGAGATTTCTGGACGAAATTATGAAGAAATATTTTTTATCG
TTGTTGTACTTTACTTGGTTATAGTATATAGCCCCACCCCCTTGTTTGGA
TCTCGCAAATGGGTAGTTAGCTGTCCAAGGGGTGTCGGGAAAGTTTTTTC
GTCTACCCCTGACCACCCCCCTCATATCGCCCACTCCCTGTGTTCATCAA
CCGGCTGTCTTGAGTTTTTTTTTACAGACGGTGGGTACCACGTTGGTGTA
CGTGGCGAGTCGACTTCCCCTTCTGCTTCCTCTTCCCCTTCTTTTTCCCC
TTATCCCTCCACGGCCCGTCGCTCGTGGGAGACCTTTGATGTGTGTAGCG
TTGATCAGCGTTGTTGCCATATGCCATGATACTTCCACTGGTACTATCGC
CCACTCCCTAACAACTGCACCCCGCGTTTAGTACTACCGTAAGAGAAAAC
CTACTACTGGTAGGACATAAAGTAGTACCAATGTATCTGGTGTTGGTTTT
GCAGTGGTGTGACGTGAGGGTTACCAGAGCGAGGTAGGCATTACCGTAGC
TCGGAAGAGGCGCCTTTGGGTGGCGATTCTTGCACTGCAGATCATGTTGA
GGCGTGCACCTTAATGGGGAGGGGCGGGGGGGGTACCCGCTTTGCAACCC
CTCCTTTACACATCTGAGTTTCGGAAAGGAGGGGGGGGGGGTTGGAGGAA
GTGGTGCAAATAAAAAGAATACACCAGTACCGGGTAGATGGGAAAAAACA
GAGATAAACATCGCGAATGCCACATCGGTGCAGCGAATGTGCTTTCACCA
CCGGCAGACTCGTGGTGATTTTTGTATGTTTTGTGAGGCGTTGAGCAGCG
TCGTTGCCGCCGCCATGATAATTACAATGGTGCCATCGTGCGCTCGCTTT
GCTTACCTCCCTTAAAACTGCGGCACACGTTTTTGCGTAAAAACTACTTG
GAAGTAACGTATTTAATAGTACCCAGGTATTGTTTTTGTGGTGGTACAAG
GACTGCCAGAGCGAGGTAGGCAGAGTCATTGGTGGGTAGCGATTCTTACA
ACGCCTATCGGTAGCGCCTGTATGGCGGCCAAAACGTCACGAACAGAGCC
CTGCCCAACACGTGGTGCTACGCAGGTTCTTTCGAGACTGAGCTTCATTT
CGTCTCTGGGCATGATGACGAGGGTTGACTCGCAGTTCCAGAAAGAACGG
AAGGTGTCGGGCCCACGAGCGCTCCAGCCTAGCCAGTGGGGGATGCTCTG
TCCCGCGGACACTCCGGAGGGGGAAAGCTGTGGTCTGGTGAAGAACCTGG
GT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig718:12482..16183+

>mRNA_M-pyrifera_M_contig718.17104.1 ID=mRNA_M-pyrifera_M_contig718.17104.1|Name=mRNA_M-pyrifera_M_contig718.17104.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig718:12482..16183+ (Macrocystis pyrifera P11B4 male)
ATGACCGCCATCGACCCTACCACCGTCGACGACAAGATGACCGCCATCGA
CCCTACCACCGTCGACGACAAGGACTACTACGGGAACAAGCGTCTGGAGC
TAGCTGGGCAGCTGATCTCTCTGCTGTTCGAAGATCTCTTCAAGAGATTC
AACAGCGAGCTCAAGAGGAACGCCGACATGGTGTTGTCCAAACCTAATCG
CGCCGCAGCGTTTGACATAGGACTACTACGGGAACAAGCGTCTGGAGCTA
GCTGGGCAGCTGATCTCTCTGCTGTTCGAAGATCTCTTCAAGAGATTCAA
CAGCGAGCTCAAGAGGAACGCCGACATGGTGTTGTCCAAACCTAATCGCG
CCGCAGCGTTTGACATAGGCAAGTTCTTGGAAGGGTCCACAACCATCACG
AACGGCTTCACCCACGCCATTTCCACCGGCAACTGGGTTCTGAAGAGGTT
CAAGGTCGACAGACAGGGGGTTACTCAGGCAAGTTCTTGGAAGGGTCCAC
AACCATCACGAACGGCTTCACCCACGCCATTTCCACCGGCAACTGGGTTC
TGAAGAGGTTCAAGGTCGACAGACAGGGGGTTACTCAGGTTCTTTCGAGA
CTGAGCTTCATTTCGTCTCTGGGCATGATGACGAGGGTTGACTCGCAGTT
CCAGAAAGAACGGAAGGTGTCGGGCCCACGAGCGCTCCAGCCTAGCCAGT
GGGGGATGCTCTGTCCCGCGGACACTCCGGAGGGGGAAAGCTGTGGTCTG
GTGAAGAACCTGGGTGTTCTTTCGAGACTGAGCTTCATTTCGTCTCTGGG
CATGATGACGAGGGTTGACTCGCAGTTCCAGAAAGAACGGAAGGTGTCGG
GCCCACGAGCGCTCCAGCCTAGCCAGTGGGGGATGCTCTGTCCCGCGGAC
ACTCCGGAGGGGGAAAGCTGTGGTCTGGTGAAGAACCTGGGT
back to top