mRNA_M-pyrifera_M_contig71645.17078.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71645.17078.1
Unique NamemRNA_M-pyrifera_M_contig71645.17078.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Match: A0A6H5K7F7_9PHAE (HSP40 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.460e-12
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    4 VLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYV 120
            VL+IP+TADQSEIKRAYRRKALKTHPDVN AP AK ++ 
Sbjct:   50 VLEIPETADQSEIKRAYRRKALKTHPDVNAAPTAKEDFA 88          
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Match: D7FS86_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS86_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 9.740e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query:    1 QVLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYV 120
            QVL+IP+TADQSEIKRAYRRKALKTHPDVN AP AK +  
Sbjct:   67 QVLEIPETADQSEIKRAYRRKALKTHPDVNTAPTAKEDLA 106          
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Match: A0A7S1TSI5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSI5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.850e-9
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1
Query:    1 QVLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYVR 123
            ++L +P+TA + E+K+AYRRKALKTHPD NK+P+A  ++ R
Sbjct:   10 EILGVPETASEDEVKKAYRRKALKTHPDKNKSPDAVQQFQR 50          
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Match: A0A5J4Z5Q5_PORPP (Chaperone protein DnaJ n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5Q5_PORPP)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-7
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    4 VLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYVR 123
            VL +  TA + EIKRAYRR ALK HPDVNK+PNA AE+ R
Sbjct:   77 VLGVDKTASKVEIKRAYRRLALKAHPDVNKSPNAAAEFGR 116          
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Match: Q10BD0_ORYSJ (DnaJ domain containing protein, expressed n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10BD0_ORYSJ)

HSP 1 Score: 53.5 bits (127), Expect = 1.840e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    4 VLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYVR 123
            VL +P +A   EIKRAYRR ALK HPDVNK PNA+ +++R
Sbjct:   80 VLGVPPSAPPEEIKRAYRRLALKFHPDVNKEPNAQEKFLR 119          
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Match: A0A1Y1I3U0_KLENI (Chaperone DnaJ-domain superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3U0_KLENI)

HSP 1 Score: 53.9 bits (128), Expect = 3.250e-7
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    1 QVLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYVR 123
            ++L +P++AD  EIK+AYRR ALK HPDVNK  NA+A +V+
Sbjct:  156 ELLGVPESADDKEIKKAYRRMALKYHPDVNKEKNAEAVFVK 196          
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Match: A2XNH5_ORYSI (J domain-containing protein n=8 Tax=Oryza TaxID=4527 RepID=A2XNH5_ORYSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.840e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    4 VLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYVR 123
            VL +P +A   EIKRAYRR ALK HPDVNK PNA+ +++R
Sbjct:   80 VLGVPPSAPPEEIKRAYRRLALKFHPDVNKEPNAQEKFLR 119          
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Match: UPI0009E3870E (dnaJ homolog subfamily B member 9 isoform X4 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E3870E)

HSP 1 Score: 52.8 bits (125), Expect = 5.190e-7
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    1 QVLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYVR 123
            +VL +  +A Q EIK+AYRR ALK HPDVNK PNA+ +++R
Sbjct:   74 EVLSVSSSATQEEIKKAYRRLALKYHPDVNKEPNAQEKFMR 114          
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Match: A0A835UVK4_VANPL (J domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UVK4_VANPL)

HSP 1 Score: 52.4 bits (124), Expect = 5.300e-7
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    1 QVLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYVR 123
            +VL +  +A   EIKRAYRR ALK HPDVNK PNAK +++R
Sbjct:   86 EVLGVSPSASPQEIKRAYRRLALKYHPDVNKQPNAKDKFMR 126          
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Match: A0A328CWH2_9ASTE (J domain-containing protein n=1 Tax=Cuscuta australis TaxID=267555 RepID=A0A328CWH2_9ASTE)

HSP 1 Score: 52.4 bits (124), Expect = 6.850e-7
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    1 QVLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYVR 123
            +VL I   A   EIKRAYR+ ALK HPDVNKAPNAK +++R
Sbjct:   78 EVLGISPAATPFEIKRAYRKLALKYHPDVNKAPNAKEKFMR 118          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71645.17078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7F7_9PHAE2.460e-1279.49HSP40 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FS86_ECTSI9.740e-1280.00Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A7S1TSI5_9STRA7.850e-956.10Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5J4Z5Q5_PORPP1.270e-767.50Chaperone protein DnaJ n=1 Tax=Porphyridium purpur... [more]
Q10BD0_ORYSJ1.840e-762.50DnaJ domain containing protein, expressed n=2 Tax=... [more]
A0A1Y1I3U0_KLENI3.250e-758.54Chaperone DnaJ-domain superfamily protein n=1 Tax=... [more]
A2XNH5_ORYSI3.840e-762.50J domain-containing protein n=8 Tax=Oryza TaxID=45... [more]
UPI0009E3870E5.190e-758.54dnaJ homolog subfamily B member 9 isoform X4 n=1 T... [more]
A0A835UVK4_VANPL5.300e-760.98J domain-containing protein n=1 Tax=Vanilla planif... [more]
A0A328CWH2_9ASTE6.850e-763.41J domain-containing protein n=1 Tax=Cuscuta austra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71645contigM-pyrifera_M_contig71645:878..1006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue6.4e-10
Seed eggNOG ortholog2880.D7FS86
KEGG koko:K09510,ko:K09511
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons1
Model size129
Cds size129
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.8306975-CDS-M-pyrifera_M_contig71645:877..10061622816611.8306975-CDS-M-pyrifera_M_contig71645:877..1006Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71645 878..1006 -
1692278076.908233-CDS-M-pyrifera_M_contig71645:877..10061692278076.908233-CDS-M-pyrifera_M_contig71645:877..1006Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71645 878..1006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71645.17078.1prot_M-pyrifera_M_contig71645.17078.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71645 878..1006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71645.17078.1

>prot_M-pyrifera_M_contig71645.17078.1 ID=prot_M-pyrifera_M_contig71645.17078.1|Name=mRNA_M-pyrifera_M_contig71645.17078.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
QVLDIPDTADQSEIKRAYRRKALKTHPDVNKAPNAKAEYVRK*
back to top

mRNA from alignment at M-pyrifera_M_contig71645:878..1006-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71645.17078.1 ID=mRNA_M-pyrifera_M_contig71645.17078.1|Name=mRNA_M-pyrifera_M_contig71645.17078.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig71645:878..1006- (Macrocystis pyrifera P11B4 male)
CAGGTTCTCGATATTCCGGACACCGCGGACCAATCGGAGATCAAGCGAGC CTATCGGAGGAAAGCTCTCAAGACCCATCCGGACGTCAACAAGGCACCCA ATGCCAAAGCCGAGTACGTTCGGAAGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig71645:878..1006-

>mRNA_M-pyrifera_M_contig71645.17078.1 ID=mRNA_M-pyrifera_M_contig71645.17078.1|Name=mRNA_M-pyrifera_M_contig71645.17078.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig71645:878..1006- (Macrocystis pyrifera P11B4 male)
CAGGTTCTCGATATTCCGGACACCGCGGACCAATCGGAGATCAAGCGAGC
CTATCGGAGGAAAGCTCTCAAGACCCATCCGGACGTCAACAAGGCACCCA
ATGCCAAAGCCGAGTACGTTCGGAAGTGACAGGTTCTCGATATTCCGGAC
ACCGCGGACCAATCGGAGATCAAGCGAGCCTATCGGAGGAAAGCTCTCAA
GACCCATCCGGACGTCAACAAGGCACCCAATGCCAAAGCCGAGTACGTTC
GGAAGTGA
back to top