mRNA_M-pyrifera_M_contig7162.17073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7162.17073.1
Unique NamemRNA_M-pyrifera_M_contig7162.17073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7162.17073.1 vs. uniprot
Match: D8LIS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIS6_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 6.710e-48
Identity = 85/99 (85.86%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:    1 ASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPR----------SGGSHRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAA 267
            ASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYP+            GS+RVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAA
Sbjct:  315 ASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQPTGPASNSRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAA 413
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BLAST of mRNA_M-pyrifera_M_contig7162.17073.1 vs. uniprot
Match: A0A6H5K430_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K430_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.160e-46
Identity = 85/99 (85.86%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:    1 ASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPR----------SGGSHRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAA 267
            ASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYP+            GS+RVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAA
Sbjct:  823 ASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPQPTGPGSSSRVGPGSNRVDTPRVRKCFSALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAA 921
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7162.17073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIS6_ECTSI6.710e-4885.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K430_9PHAE2.160e-4685.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7162contigM-pyrifera_M_contig7162:122..937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_001400.1
Exons3
Model size546
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7162.17073.1prot_M-pyrifera_M_contig7162.17073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7162 122..937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.5626023-CDS-M-pyrifera_M_contig7162:121..4011622816611.5626023-CDS-M-pyrifera_M_contig7162:121..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7162 122..401 +
1692278076.7560172-CDS-M-pyrifera_M_contig7162:121..4011692278076.7560172-CDS-M-pyrifera_M_contig7162:121..401Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7162 122..401 +
1622816611.5735028-CDS-M-pyrifera_M_contig7162:632..6851622816611.5735028-CDS-M-pyrifera_M_contig7162:632..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7162 633..685 +
1692278076.7654614-CDS-M-pyrifera_M_contig7162:632..6851692278076.7654614-CDS-M-pyrifera_M_contig7162:632..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7162 633..685 +
1622816611.5857031-CDS-M-pyrifera_M_contig7162:724..9371622816611.5857031-CDS-M-pyrifera_M_contig7162:724..937Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7162 725..937 +
1692278076.7743003-CDS-M-pyrifera_M_contig7162:724..9371692278076.7743003-CDS-M-pyrifera_M_contig7162:724..937Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7162 725..937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7162.17073.1

>prot_M-pyrifera_M_contig7162.17073.1 ID=prot_M-pyrifera_M_contig7162.17073.1|Name=mRNA_M-pyrifera_M_contig7162.17073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
ASRRQLTNLCQSNGTPTGFDCLTRYLLGNRYPRSGGSHRVDTPRVRKCFS
ALAAQVGNHPDRGQLDYHALGVGRCVFTLRRARVAALAAAARRAGAGVGG
AAPSPSSSPPPPPAAAAAAAAAAAAAAAAAAAAAAAAAAAPRPAPAPARV
RSATAPAATAPAATAHVVEGKGGAGGGVGGGG
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mRNA from alignment at M-pyrifera_M_contig7162:122..937+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7162.17073.1 ID=mRNA_M-pyrifera_M_contig7162.17073.1|Name=mRNA_M-pyrifera_M_contig7162.17073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig7162:122..937+ (Macrocystis pyrifera P11B4 male)
GCGAGCCGTCGTCAGCTGACCAACCTCTGCCAGAGCAACGGGACGCCAAC
AGGGTTCGACTGCCTCACCCGCTACCTTCTGGGAAACCGCTACCCTCGCA
GTGGCGGCTCCCACCGCGTAGATACCCCCAGGGTGCGCAAGTGCTTCTCC
GCCCTTGCGGCCCAGGTAGGTAATCATCCGGACAGAGGACAGCTGGACTA
TCACGCGTTGGGGGTCGGGCGCTGCGTGTTTACGCTGCGGCGCGCCCGGG
TGGCTGCTCTTGCTGCTGCGGCGAGGCGGGGTGGTGGGGGTAGTGGTGGT
GTTGATGGTGGGGCGGACGAGAGGCCGAGAGCGGAGGGCGTGGGGGCAGG
GGTGGCGCCGGAGTCAGGGGTAGGGGTGGGGGTTGCGTCTAGGGGGGTGG
TGGAAGTTGGGGGGGGCGCGGGCGAAGTGGGGGTTGGGATTGAACCTCGG
GGGGCGGGGGCTGGGGCGAGAGCGGGAGTAGCGACGGCGGCGGTGCCAGC
GGGAGTGGGAGCGGGGGCGGGGGTGGGCGGTGCAGCGCCTTCTCCGTCAT
CCTCTCCACCACCTGTGCGTAGCTCGCCTGGAGAAGCCGTTGCCGTAGGT
CAGCCTCCTGCCGCCGCCGCCGCCGCTGCCGCTGCTGCTGCCGCTGCTGC
TGCCGCTGCTGCCGCTGCTGCCGCCGCTGCCGCTGCCGCCCCTCGTCCCG
CTCCCGCTCCCGCTCGCGTTAGAAGCGCTACGGCGCCTGCGGCTACGGCG
CCTGCGGCTACGGCGCACGTGGTGGAGGGCAAAGGCGGCGCTGGTGGGGG
CGTAGGGGGTGGTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7162:122..937+

>mRNA_M-pyrifera_M_contig7162.17073.1 ID=mRNA_M-pyrifera_M_contig7162.17073.1|Name=mRNA_M-pyrifera_M_contig7162.17073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig7162:122..937+ (Macrocystis pyrifera P11B4 male)
GCGAGCCGTCGTCAGCTGACCAACCTCTGCCAGAGCAACGGGACGCCAAC
AGGGTTCGACTGCCTCACCCGCTACCTTCTGGGAAACCGCTACCCTCGCA
GTGGCGGCTCCCACCGCGTAGATACCCCCAGGGTGCGCAAGTGCTTCTCC
GCCCTTGCGGCCCAGGTAGGTAATCATCCGGACAGAGGACAGCTGGACTA
TCACGCGTTGGGGGTCGGGCGCTGCGTGTTTACGCTGCGGCGCGCCCGGG
TGGCTGCTCTTGCTGCTGCGGCGAGGCGGGGCGAGCCGTCGTCAGCTGAC
CAACCTCTGCCAGAGCAACGGGACGCCAACAGGGTTCGACTGCCTCACCC
GCTACCTTCTGGGAAACCGCTACCCTCGCAGTGGCGGCTCCCACCGCGTA
GATACCCCCAGGGTGCGCAAGTGCTTCTCCGCCCTTGCGGCCCAGGTAGG
TAATCATCCGGACAGAGGACAGCTGGACTATCACGCGTTGGGGGTCGGGC
GCTGCGTGTTTACGCTGCGGCGCGCCCGGGTGGCTGCTCTTGCTGCTGCG
GCGAGGCGGGCGGGGGCGGGGGTGGGCGGTGCAGCGCCTTCTCCGTCATC
CTCTCCACCACCTCGGGGGCGGGGGTGGGCGGTGCAGCGCCTTCTCCGTC
ATCCTCTCCACCACCTCCTCCTGCCGCCGCCGCCGCCGCTGCCGCTGCTG
CTGCCGCTGCTGCTGCCGCTGCTGCCGCTGCTGCCGCCGCTGCCGCTGCC
GCCCCTCGTCCCGCTCCCGCTCCCGCTCGCGTTAGAAGCGCTACGGCGCC
TGCGGCTACGGCGCCTGCGGCTACGGCGCACGTGGTGGAGGGCAAAGGCG
GCGCTGGTGGGGGCGTAGGGGGTGGTGGTCCTCCTGCCGCCGCCGCCGCC
GCTGCCGCTGCTGCTGCCGCTGCTGCTGCCGCTGCTGCCGCTGCTGCCGC
CGCTGCCGCTGCCGCCCCTCGTCCCGCTCCCGCTCCCGCTCGCGTTAGAA
GCGCTACGGCGCCTGCGGCTACGGCGCCTGCGGCTACGGCGCACGTGGTG
GAGGGCAAAGGCGGCGCTGGTGGGGGCGTAGGGGGTGGTGGT
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