mRNA_M-pyrifera_M_contig71608.17067.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71608.17067.1
Unique NamemRNA_M-pyrifera_M_contig71608.17067.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig71608.17067.1 vs. uniprot
Match: UPI001689936B (PEP-CTERM sorting domain-containing protein n=1 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=UPI001689936B)

HSP 1 Score: 70.9 bits (172), Expect = 2.380e-12
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:    1 LIPAGEVFSELRERIATDEEGPLSEVRSLYRDVIHANGIGRFATATTVFATVFQTNPIGLPVDYSANPLWNAFTLPADVALEVQKVVWDVVVRTKRTGVSP 303
            LIP G V   L +++   E    +++  +Y D  H N +G +  ATT +AT+FQ++PIGLPV     P      +  ++A  +Q  VWDVV  T  +GV+P
Sbjct:  209 LIPVGHVMYALNQKMKAGEIPGFTKITDVYIDRGHLNSVGSYIVATTFYATIFQSSPIGLPVP---PPYQEDQPISDELAAVIQNTVWDVVTTTPLSGVTP 306
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BLAST of mRNA_M-pyrifera_M_contig71608.17067.1 vs. uniprot
Match: UPI001F435071 (putative Ig domain-containing protein n=1 Tax=Leptodesmis sichuanensis TaxID=2906798 RepID=UPI001F435071)

HSP 1 Score: 69.3 bits (168), Expect = 1.440e-11
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:    1 LIPAGEVFSELRERIATDEEGPLSEVRSLYRDVIHANGIGRFATATTVFATVFQTNPIGLPV--DYSANPLWNAF-TLPADVALEVQKVVWDVVVRTKRTGVSPLG 309
            +IP G V   L +R+        + +  LY D  H N +G +  A T FAT++Q NP+GLP+  +Y  +P  +    L  ++A  +Q  VWDVV  T  +GVS +G
Sbjct:  166 MIPVGHVMYALNKRMKAGLVPGYTSITQLYTDETHLNNVGSYLVALTFFATIYQENPLGLPIPQEYQPDPTRSYDQALSNELAAILQDTVWDVVTTTPLSGVSAVG 271
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BLAST of mRNA_M-pyrifera_M_contig71608.17067.1 vs. uniprot
Match: A0A7G9NTW8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9NTW8_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 1.490e-11
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:    1 LIPAGEVFSELRERIATDEEGPLSEVRSLYRDVIHANGIGRFATATTVFATVFQTNPIGL---PVDYSANPLWNAFTLPADVALEVQKVVWDVVVRT-KRTGVSP 303
            +IP G V +EL +RI   +    +EV+ LYRD++H NG+GRFA   T +  +F  NP GL   P  Y     +N     A     ++  VW VV    ++TGV P
Sbjct:  189 VIPTGAVIAELDQRIRDGKIEGYTEVKDLYRDIVHLNGVGRFAAGVTTYTVLFNQNPAGLVCPPKQYGGPQQFNEALYQA-----IEDAVWKVVTDMHEQTGVKP 288
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BLAST of mRNA_M-pyrifera_M_contig71608.17067.1 vs. uniprot
Match: A0A832HBR8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A832HBR8_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 9.380e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:    1 LIPAGEVFSELRERIATDEEGPLSEVRSLYRDVIHANGIGRFATATTVFATVFQTNPIGLPVD--YSANPLWNAFTLPADVALEVQKVVWDVVVRTKRTGV 297
            L+P G+VF E+ +R+ +      S V  LY D IH + +G +  A T  A V+Q +P+ LPV   Y++  + N   + +D+A  +Q  VWD V    R+GV
Sbjct:  201 LVPVGDVFYEINQRMKSGLIPGYSNVYQLYNDGIHVSNVGSYVLALTYHAVVYQQSPVELPVPAAYASTGVANDRPIGSDLAWALQLAVWDAVRNNPRSGV 301
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BLAST of mRNA_M-pyrifera_M_contig71608.17067.1 vs. uniprot
Match: A0A5C4R137_9RHOB (Uncharacterized protein n=4 Tax=Paracoccus TaxID=265 RepID=A0A5C4R137_9RHOB)

HSP 1 Score: 54.7 bits (130), Expect = 1.740e-6
Identity = 29/107 (27.10%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:    1 LIPAGEVFSELRERIATDEEGPLSEVRSLY-------RDVIHANGIGRFATATTVFATVFQTNPIGLPVDYSANPLWNAFTLPADVALEVQKVVWDVVVRTKRTGVS 300
            +IP G+  + +       E   ++  + L+       +D+IH N +G +  A   F  ++  +P+GLP          A +  A+ A++VQ++V DVV+R  +TGV+
Sbjct:  228 VIPGGQTIAAVARAAEVGELAGVTSRKELFARDEAGGQDMIHLNDLGAYVIALVHFTVIYHKSPVGLPYQLLRADGTRAVSFGAEAAMQVQRIVRDVVLRLPQTGVA 334
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71608.17067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001689936B2.380e-1236.63PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
UPI001F4350711.440e-1135.85putative Ig domain-containing protein n=1 Tax=Lept... [more]
A0A7G9NTW8_9BACT1.490e-1137.14Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A832HBR8_9BACT9.380e-1135.64Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A5C4R137_9RHOB1.740e-627.10Uncharacterized protein n=4 Tax=Paracoccus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71608contigM-pyrifera_M_contig71608:13..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue9.9e-09
Seed eggNOG ortholog999611.KI421504_gene3857
Hectar predicted targeting categoryother localisation
EggNOG OGs1PF6W@1224,280K0@191028,2C0AM@1,2U2Z1@28211,2Z7PJ@2
Best tax levelLeisingera
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816611.285295-CDS-M-pyrifera_M_contig71608:12..3211622816611.285295-CDS-M-pyrifera_M_contig71608:12..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71608 13..321 +
1692278076.617286-CDS-M-pyrifera_M_contig71608:12..3211692278076.617286-CDS-M-pyrifera_M_contig71608:12..321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71608 13..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71608.17067.1prot_M-pyrifera_M_contig71608.17067.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71608 13..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71608.17067.1

>prot_M-pyrifera_M_contig71608.17067.1 ID=prot_M-pyrifera_M_contig71608.17067.1|Name=mRNA_M-pyrifera_M_contig71608.17067.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
LIPAGEVFSELRERIATDEEGPLSEVRSLYRDVIHANGIGRFATATTVFA
TVFQTNPIGLPVDYSANPLWNAFTLPADVALEVQKVVWDVVVRTKRTGVS
PLG
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mRNA from alignment at M-pyrifera_M_contig71608:13..321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71608.17067.1 ID=mRNA_M-pyrifera_M_contig71608.17067.1|Name=mRNA_M-pyrifera_M_contig71608.17067.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig71608:13..321+ (Macrocystis pyrifera P11B4 male)
CTCATCCCGGCTGGCGAGGTCTTTAGCGAGCTCCGCGAGCGGATTGCCAC
CGACGAAGAGGGGCCGTTGAGTGAAGTGAGGAGCCTGTATCGCGATGTGA
TCCACGCGAATGGGATCGGCCGGTTCGCGACGGCGACCACGGTTTTTGCG
ACGGTCTTTCAGACCAACCCCATCGGCTTGCCCGTCGACTATTCGGCGAA
CCCTCTATGGAACGCATTCACGCTCCCCGCAGACGTTGCCTTAGAAGTGC
AGAAAGTCGTTTGGGACGTGGTCGTTCGCACCAAGCGGACGGGAGTGTCA
CCGCTCGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71608:13..321+

>mRNA_M-pyrifera_M_contig71608.17067.1 ID=mRNA_M-pyrifera_M_contig71608.17067.1|Name=mRNA_M-pyrifera_M_contig71608.17067.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig71608:13..321+ (Macrocystis pyrifera P11B4 male)
CTCATCCCGGCTGGCGAGGTCTTTAGCGAGCTCCGCGAGCGGATTGCCAC
CGACGAAGAGGGGCCGTTGAGTGAAGTGAGGAGCCTGTATCGCGATGTGA
TCCACGCGAATGGGATCGGCCGGTTCGCGACGGCGACCACGGTTTTTGCG
ACGGTCTTTCAGACCAACCCCATCGGCTTGCCCGTCGACTATTCGGCGAA
CCCTCTATGGAACGCATTCACGCTCCCCGCAGACGTTGCCTTAGAAGTGC
AGAAAGTCGTTTGGGACGTGGTCGTTCGCACCAAGCGGACGGGAGTGTCA
CCGCTCGGACTCATCCCGGCTGGCGAGGTCTTTAGCGAGCTCCGCGAGCG
GATTGCCACCGACGAAGAGGGGCCGTTGAGTGAAGTGAGGAGCCTGTATC
GCGATGTGATCCACGCGAATGGGATCGGCCGGTTCGCGACGGCGACCACG
GTTTTTGCGACGGTCTTTCAGACCAACCCCATCGGCTTGCCCGTCGACTA
TTCGGCGAACCCTCTATGGAACGCATTCACGCTCCCCGCAGACGTTGCCT
TAGAAGTGCAGAAAGTCGTTTGGGACGTGGTCGTTCGCACCAAGCGGACG
GGAGTGTCACCGCTCGGA
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