mRNA_M-pyrifera_M_contig71571.17059.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71571.17059.1
Unique NamemRNA_M-pyrifera_M_contig71571.17059.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Match: D7FK26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK26_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.560e-21
Identity = 38/63 (60.32%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    1 QATFPGRIDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGAYTDLVNFQAIASR 189
            QA FPGR+++++GDS+VT+PA+   E   GR+P+ C+++FVDG+HSEDGAY DLVNF+A+ASR
Sbjct:  225 QAMFPGRLEVLIGDSSVTIPAYVVAEAAAGREPQGCNILFVDGDHSEDGAYADLVNFRAMASR 287          
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Match: D8LQ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ26_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.070e-19
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 QATFPGRIDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGAYTDLVNFQAIASR 189
            QA FPGR++LV+GDS+ TVPA  A +   GRDPR CD+VFVDGNHSE+G Y DLVNF A  +R
Sbjct:  623 QAVFPGRLELVLGDSSETVPAHTAADAAAGRDPRVCDLVFVDGNHSEEGTYADLVNFAAKTNR 685          
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Match: A0A6H5K0Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q1_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 5.110e-19
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 QATFPGRIDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGAYTDLVNFQAIASR 189
            QA FPGR++LV+GDS+ TVPA  A +   GRDPR CD+VFVDG+HSE+G Y DLVNF A  +R
Sbjct:  718 QAVFPGRLELVLGDSSETVPAHTAADAAAGRDPRVCDLVFVDGDHSEEGTYADLVNFAAKTNR 780          
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Match: D7FK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK45_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.770e-18
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    1 QATFPGRIDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGAYTDLVNFQAIASR 189
            Q  FPGR+++++G S VT+PA+A  E   GRD R C+V+FVDG+H+E+GAY DL+NF+A+ASR
Sbjct:  581 QMVFPGRLEVLIGHSTVTIPAYAVVEEAAGRDTRTCNVLFVDGDHTEEGAYADLINFRALASR 643          
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Match: A0A6H5JH46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH46_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.500e-14
Identity = 31/56 (55.36%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   22 IDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGAYTDLVNFQAIASR 189
            + +++GDS+VT+PA+   E   GR+P+AC+++FVDG+HSE GAY DLVNF+ +ASR
Sbjct:  772 MQVLIGDSSVTIPAYVVAEDAAGREPQACNILFVDGDHSEGGAYADLVNFRVLASR 827          
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Match: A0A4Q7JGC9_9PSEU (Class I SAM-dependent methyltransferase n=2 Tax=Amycolatopsis suaedae TaxID=2510978 RepID=A0A4Q7JGC9_9PSEU)

HSP 1 Score: 54.3 bits (129), Expect = 4.060e-7
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   10 FPGRIDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGAYTDLVNFQAI 180
            +PGR +L+VGDSA TVP ++ +         +CD++FVDG H  D AY D+VN + I
Sbjct:  123 YPGRHELIVGDSARTVPGYSGQ---------SCDLLFVDGGHDYDIAYADIVNGRGI 170          
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Match: A0A0H5CRU7_9PSEU (Uncharacterized protein n=2 Tax=Alloactinosynnema sp. L-07 TaxID=1653480 RepID=A0A0H5CRU7_9PSEU)

HSP 1 Score: 53.9 bits (128), Expect = 4.470e-7
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   10 FPGRIDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGAYTDLVNFQAIA 183
            +PGR +LV+GDS VTVP FAA      RD R  D+VFVDG H+ + A  D+ N +AIA
Sbjct:   92 YPGRHELVIGDSTVTVPDFAAT-----RDDRF-DLVFVDGGHTYEVAAADIANARAIA 143          
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Match: A0A7S0EX32_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EX32_9CRYP)

HSP 1 Score: 52.4 bits (124), Expect = 2.740e-6
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   10 FPGRIDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGAYTDLVNFQAIAS 186
            FP R  L++GDSA+ VPAFA   + +       D+ FVDG HS + A+TD++N  A+AS
Sbjct:  281 FPRRHSLILGDSAMAVPAFARMNQLQ-----TFDLFFVDGGHSLEQAHTDMINCHALAS 334          
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Match: A0A1X0BJC4_9MYCO (Uncharacterized protein n=2 Tax=Mycolicibacterium celeriflavum TaxID=1249101 RepID=A0A1X0BJC4_9MYCO)

HSP 1 Score: 50.8 bits (120), Expect = 6.690e-6
Identity = 28/59 (47.46%), Postives = 34/59 (57.63%), Query Frame = 1
Query:   10 FPGRIDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGAYTDLVNFQAIAS 186
            FPGR +L+VGDS  TVPAFA E           DV F+DG H  + A  DL N +A+ S
Sbjct:   89 FPGRHELIVGDSRETVPAFAEENPGV-----VFDVAFIDGGHDYEVAAADLKNMRALCS 142          
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Match: UPI0004113EB8 (class I SAM-dependent methyltransferase n=1 Tax=Actinospica robiniae TaxID=304901 RepID=UPI0004113EB8)

HSP 1 Score: 50.8 bits (120), Expect = 6.840e-6
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   10 FPGRIDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGAYTDLVNFQAIASR 189
            +PGR +LVVGDS VTVP FA E  R G   +  D+VF+DG+H  D A  D+ N   IA++
Sbjct:  101 YPGRHELVVGDSQVTVPEFA-EACRAGS--QGFDLVFIDGSHMYDVAANDIRNSARIAAQ 157          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71571.17059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK26_ECTSI3.560e-2160.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQ26_ECTSI1.070e-1965.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0Q1_9PHAE5.110e-1963.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK45_ECTSI1.770e-1857.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH46_9PHAE1.500e-1455.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4Q7JGC9_9PSEU4.060e-745.61Class I SAM-dependent methyltransferase n=2 Tax=Am... [more]
A0A0H5CRU7_9PSEU4.470e-753.45Uncharacterized protein n=2 Tax=Alloactinosynnema ... [more]
A0A7S0EX32_9CRYP2.740e-645.76Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A1X0BJC4_9MYCO6.690e-647.46Uncharacterized protein n=2 Tax=Mycolicibacterium ... [more]
UPI0004113EB86.840e-650.00class I SAM-dependent methyltransferase n=1 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71571contigM-pyrifera_M_contig71571:499..690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D7FK26
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E2B0@1,2S9J2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816610.9483929-CDS-M-pyrifera_M_contig71571:498..6901622816610.9483929-CDS-M-pyrifera_M_contig71571:498..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71571 499..690 -
1692278076.4605436-CDS-M-pyrifera_M_contig71571:498..6901692278076.4605436-CDS-M-pyrifera_M_contig71571:498..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71571 499..690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71571.17059.1prot_M-pyrifera_M_contig71571.17059.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71571 499..690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71571.17059.1

>prot_M-pyrifera_M_contig71571.17059.1 ID=prot_M-pyrifera_M_contig71571.17059.1|Name=mRNA_M-pyrifera_M_contig71571.17059.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
QATFPGRIDLVVGDSAVTVPAFAAEERREGRDPRACDVVFVDGNHSEDGA
YTDLVNFQAIASR*
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mRNA from alignment at M-pyrifera_M_contig71571:499..690-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71571.17059.1 ID=mRNA_M-pyrifera_M_contig71571.17059.1|Name=mRNA_M-pyrifera_M_contig71571.17059.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig71571:499..690- (Macrocystis pyrifera P11B4 male)
CAGGCAACTTTTCCCGGTCGCATCGATCTGGTCGTCGGGGATTCCGCCGT GACGGTGCCCGCGTTCGCCGCGGAGGAGCGACGAGAGGGACGCGACCCTC GTGCGTGCGACGTGGTTTTTGTGGACGGTAACCACAGCGAAGACGGGGCG TACACCGACCTCGTCAACTTCCAGGCCATAGCTAGCAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71571:499..690-

>mRNA_M-pyrifera_M_contig71571.17059.1 ID=mRNA_M-pyrifera_M_contig71571.17059.1|Name=mRNA_M-pyrifera_M_contig71571.17059.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig71571:499..690- (Macrocystis pyrifera P11B4 male)
CAGGCAACTTTTCCCGGTCGCATCGATCTGGTCGTCGGGGATTCCGCCGT
GACGGTGCCCGCGTTCGCCGCGGAGGAGCGACGAGAGGGACGCGACCCTC
GTGCGTGCGACGTGGTTTTTGTGGACGGTAACCACAGCGAAGACGGGGCG
TACACCGACCTCGTCAACTTCCAGGCCATAGCTAGCAGGTGACAGGCAAC
TTTTCCCGGTCGCATCGATCTGGTCGTCGGGGATTCCGCCGTGACGGTGC
CCGCGTTCGCCGCGGAGGAGCGACGAGAGGGACGCGACCCTCGTGCGTGC
GACGTGGTTTTTGTGGACGGTAACCACAGCGAAGACGGGGCGTACACCGA
CCTCGTCAACTTCCAGGCCATAGCTAGCAGGTGA
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