mRNA_M-pyrifera_M_contig71250.16992.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71250.16992.1
Unique NamemRNA_M-pyrifera_M_contig71250.16992.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig71250.16992.1 vs. uniprot
Match: D8LLU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU9_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.030e-13
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 VYCGYLATRGLRLETAMNAFRSWETLTSTRQLRN 102
            VYCGYLATRGLRLE A NAFRSWETLTS RQLRN
Sbjct:   29 VYCGYLATRGLRLEAATNAFRSWETLTSIRQLRN 62
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BLAST of mRNA_M-pyrifera_M_contig71250.16992.1 vs. uniprot
Match: A0A6H5LKZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKZ1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.350e-12
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 VYCGYLATRGLRLETAMNAFRSWETLTSTRQLRN 102
            VYCGYLATRGLRLE A NAFRSWETLTSTRQLRN
Sbjct:  356 VYCGYLATRGLRLEAATNAFRSWETLTSTRQLRN 389
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71250.16992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLU9_ECTSI3.030e-1391.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LKZ1_9PHAE3.350e-1294.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71250contigM-pyrifera_M_contig71250:966..1079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816607.1117666-CDS-M-pyrifera_M_contig71250:965..10791622816607.1117666-CDS-M-pyrifera_M_contig71250:965..1079Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71250 966..1079 -
1692278074.1669888-CDS-M-pyrifera_M_contig71250:965..10791692278074.1669888-CDS-M-pyrifera_M_contig71250:965..1079Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71250 966..1079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71250.16992.1prot_M-pyrifera_M_contig71250.16992.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71250 966..1079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71250.16992.1

>prot_M-pyrifera_M_contig71250.16992.1 ID=prot_M-pyrifera_M_contig71250.16992.1|Name=mRNA_M-pyrifera_M_contig71250.16992.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
VYCGYLATRGLRLETAMNAFRSWETLTSTRQLRNVSLL
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mRNA from alignment at M-pyrifera_M_contig71250:966..1079-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71250.16992.1 ID=mRNA_M-pyrifera_M_contig71250.16992.1|Name=mRNA_M-pyrifera_M_contig71250.16992.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig71250:966..1079- (Macrocystis pyrifera P11B4 male)
GTCTATTGCGGGTACCTAGCCACCAGGGGATTGCGCCTGGAGACCGCAAT
GAACGCGTTCCGCTCCTGGGAAACCCTGACCAGCACCCGCCAGCTGCGCA
ATGTGAGCCTTCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71250:966..1079-

>mRNA_M-pyrifera_M_contig71250.16992.1 ID=mRNA_M-pyrifera_M_contig71250.16992.1|Name=mRNA_M-pyrifera_M_contig71250.16992.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig71250:966..1079- (Macrocystis pyrifera P11B4 male)
GTCTATTGCGGGTACCTAGCCACCAGGGGATTGCGCCTGGAGACCGCAAT
GAACGCGTTCCGCTCCTGGGAAACCCTGACCAGCACCCGCCAGCTGCGCA
ATGTGAGCCTTCTTGTCTATTGCGGGTACCTAGCCACCAGGGGATTGCGC
CTGGAGACCGCAATGAACGCGTTCCGCTCCTGGGAAACCCTGACCAGCAC
CCGCCAGCTGCGCAATGTGAGCCTTCTT
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