mRNA_M-pyrifera_M_contig71240.16991.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71240.16991.1
Unique NamemRNA_M-pyrifera_M_contig71240.16991.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig71240.16991.1 vs. uniprot
Match: A0A2E7KH86_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KH86_9PLAN)

HSP 1 Score: 254 bits (649), Expect = 1.460e-84
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:    1 LSLHKKMEAWAERHFHDTPVPEILQKAGLEGISVTPFTYQNWDWYGPSYECYIIVWEDEVSSQTLVELQALLTGEHKDWSIVVCTTQDPHFDPDYYDIAIFSDEVLIPEEALKGLQFDR 357
            LSLHKKMEAWAERHFHDTPVPEILQKAGLEGISVTPFTYQNWDWYGPSYECYIIVWEDEVSSQTLVELQALLTGEHKDWSIVVCTTQDPHFDPDYYDIAIFSDEVLIPEEALK LQFDR
Sbjct:   95 LSLHKKMEAWAERHFHDTPVPEILQKAGLEGISVTPFTYQNWDWYGPSYECYIIVWEDEVSSQTLVELQALLTGEHKDWSIVVCTTQDPHFDPDYYDIAIFSDEVLIPEEALKDLQFDR 213
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BLAST of mRNA_M-pyrifera_M_contig71240.16991.1 vs. uniprot
Match: A0A517ZZM1_9PLAN (Uncharacterized protein n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZM1_9PLAN)

HSP 1 Score: 164 bits (415), Expect = 8.180e-49
Identity = 73/117 (62.39%), Postives = 92/117 (78.63%), Query Frame = 1 
Query:    7 LHKKMEAWAERHFHDTPVPEILQKAGLEGISVTPFTYQNWDWYGPSYECYIIVWEDEVSSQTLVELQALLTGEHKDWSIVVCTTQDPHFDPDYYDIAIFSDEVLIPEEALKGLQFDR 357
            LH+KME     HF DTPVPEILQK GL   +V+PFTYQNWDWYGPSYECY++VWED +SS+ L+ELQ+LLTG+H+DW IVVCTT+   F+ ++ +I +FSDEVLIP+ A   L+  R
Sbjct:   98 LHRKMEECVNNHFRDTPVPEILQKEGLADKTVSPFTYQNWDWYGPSYECYLVVWEDALSSKLLIELQSLLTGDHRDWCIVVCTTRQTDFETNH-EIGVFSDEVLIPKSATPDLKISR 213
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BLAST of mRNA_M-pyrifera_M_contig71240.16991.1 vs. uniprot
Match: A0A2G2K2C7_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2K2C7_9BACT)

HSP 1 Score: 108 bits (269), Expect = 2.430e-27
Identity = 52/113 (46.02%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:    7 LHKKMEAWAERHFHDTPVPEILQKAGLEGISVTPFTYQNWDWYGPSYECYIIVWEDEVSSQTLVELQALLTGEHKDWSIVVCTTQDPHFDPDYYDIAIFSDEVLIPEEALKGL 345
            LH ++   ++ HF  TPVP  LQK     +  TPFTYQN+DWYGPSYECYI+V  + +S+  L + Q LL G+H+DW I V +++ P FD + ++IAIFSD +++P  A + +
Sbjct:   64 LHDELRRVSKEHFASTPVPPELQKDSEPYL--TPFTYQNYDWYGPSYECYIVVIAEYISADLLRKFQMLLEGDHQDWCIQVISSETPDFD-NGHEIAIFSDLIVVPSAAAESM 173
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71240.16991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7KH86_9PLAN1.460e-8499.16Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A517ZZM1_9PLAN8.180e-4962.39Uncharacterized protein n=4 Tax=Gimesia panareensi... [more]
A0A2G2K2C7_9BACT2.430e-2746.02Uncharacterized protein n=1 Tax=Blastopirellula sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71240contigM-pyrifera_M_contig71240:798..1157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size342
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816607.0626514-CDS-M-pyrifera_M_contig71240:797..11391622816607.0626514-CDS-M-pyrifera_M_contig71240:797..1139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71240 798..1139 -
1692278074.1493237-CDS-M-pyrifera_M_contig71240:797..11391692278074.1493237-CDS-M-pyrifera_M_contig71240:797..1139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71240 798..1139 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816607.073669-UTR-M-pyrifera_M_contig71240:1139..11571622816607.073669-UTR-M-pyrifera_M_contig71240:1139..1157Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71240 1140..1157 -
1692278074.1576128-UTR-M-pyrifera_M_contig71240:1139..11571692278074.1576128-UTR-M-pyrifera_M_contig71240:1139..1157Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71240 1140..1157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71240.16991.1prot_M-pyrifera_M_contig71240.16991.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71240 798..1139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71240.16991.1

>prot_M-pyrifera_M_contig71240.16991.1 ID=prot_M-pyrifera_M_contig71240.16991.1|Name=mRNA_M-pyrifera_M_contig71240.16991.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MEAWAERHFHDTPVPEILQKAGLEGISVTPFTYQNWDWYGPSYECYIIVW
EDEVSSQTLVELQALLTGEHKDWSIVVCTTQDPHFDPDYYDIAIFSDEVL
IPEEALKGLQFDR*
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mRNA from alignment at M-pyrifera_M_contig71240:798..1157-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71240.16991.1 ID=mRNA_M-pyrifera_M_contig71240.16991.1|Name=mRNA_M-pyrifera_M_contig71240.16991.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig71240:798..1157- (Macrocystis pyrifera P11B4 male)
CTGTCGCTGCACAAAAAAATGGAAGCCTGGGCCGAACGTCATTTTCATGA
CACGCCAGTTCCCGAAATTCTGCAGAAAGCAGGTCTCGAAGGAATCTCAG
TCACTCCGTTCACTTACCAGAACTGGGACTGGTACGGTCCGAGCTATGAA
TGTTATATCATTGTCTGGGAGGACGAAGTGTCATCACAGACACTGGTCGA
ACTACAGGCCCTGCTGACCGGCGAACACAAGGACTGGTCCATCGTGGTCT
GCACAACGCAAGATCCGCACTTCGATCCCGATTATTATGATATCGCGATC
TTCTCGGATGAAGTTTTGATTCCCGAGGAAGCATTAAAAGGCCTGCAGTT
TGACCGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71240:798..1157-

>mRNA_M-pyrifera_M_contig71240.16991.1 ID=mRNA_M-pyrifera_M_contig71240.16991.1|Name=mRNA_M-pyrifera_M_contig71240.16991.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig71240:798..1157- (Macrocystis pyrifera P11B4 male)
ATGGAAGCCTGGGCCGAACGTCATTTTCATGACACGCCAGTTCCCGAAAT
TCTGCAGAAAGCAGGTCTCGAAGGAATCTCAGTCACTCCGTTCACTTACC
AGAACTGGGACTGGTACGGTCCGAGCTATGAATGTTATATCATTGTCTGG
GAGGACGAAGTGTCATCACAGACACTGGTCGAACTACAGGCCCTGCTGAC
CGGCGAACACAAGGACTGGTCCATCGTGGTCTGCACAACGCAAGATCCGC
ACTTCGATCCCGATTATTATGATATCGCGATCTTCTCGGATGAAGTTTTG
ATTCCCGAGGAAGCATTAAAAGGCCTGCAGTTTGACCGTTAAATGGAAGC
CTGGGCCGAACGTCATTTTCATGACACGCCAGTTCCCGAAATTCTGCAGA
AAGCAGGTCTCGAAGGAATCTCAGTCACTCCGTTCACTTACCAGAACTGG
GACTGGTACGGTCCGAGCTATGAATGTTATATCATTGTCTGGGAGGACGA
AGTGTCATCACAGACACTGGTCGAACTACAGGCCCTGCTGACCGGCGAAC
ACAAGGACTGGTCCATCGTGGTCTGCACAACGCAAGATCCGCACTTCGAT
CCCGATTATTATGATATCGCGATCTTCTCGGATGAAGTTTTGATTCCCGA
GGAAGCATTAAAAGGCCTGCAGTTTGACCGTTAA
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