mRNA_M-pyrifera_M_contig711.16961.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig711.16961.1
Unique NamemRNA_M-pyrifera_M_contig711.16961.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 4.210e-25
Identity = 57/109 (52.29%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:    1 IDLAYSSVLCLTSFQQAAYTGLLGVFLKPRAVCLVVCDAGAFGQQGGGANA-KIEKDIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLASRNTAGT-RSAENRCSL 321
            ++L  SSV       Q AYTGLL +FL PR+VC++VC+AG FGQQ G  N  ++E+D R L  LRVCDWLR +S RVP +D   VATKCDL S N   T R  E+ C +
Sbjct:  168 MELEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGQQLGSDNVDQVEEDCRKLQALRVCDWLRSISRRVPGNDVILVATKCDLVSGNAEETGRRLEHACRM 276
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BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Match: A0A6H5KJL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.810e-25
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   31 LTSFQQAAYTGLLGVFLKPRAVCLVVCDAGAFGQQGGGANAK-IEKDIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLASRN 282
            ++  QQ AYTGLL +FL PR+VC++VC+AG FGQ+    +   +E+D R L+ELRVCDWLR +S RVPD+D   VATKCDLA  N
Sbjct:  122 ISHVQQVAYTGLLQMFLTPRSVCVLVCNAGEFGQRRDSEHCGGVEEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLAGGN 206
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BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 5.820e-25
Identity = 56/108 (51.85%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:   46 QAAYTGLLGVFLKPRAVCLVVCDAGAFGQQGGGA--NAKIEKDIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLASRNTAGTRSAENRCSLSGVTGKPDPRWHEA 363
            Q AYTGLL +FL PRAV L+VCD GAFGQ+ G    + +++KD+  L ELRVCDWLR +S+R+PDSD   VATKCDLA    AG  +A+    ++G  G     W +A
Sbjct:  306 QVAYTGLLQMFLSPRAVSLLVCDTGAFGQRDGSLTDSDQLKKDLNKLQELRVCDWLRSLSFRIPDSDVVMVATKCDLA----AGM-AADAAARMAGGAGNWIESWSDA 408
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BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.010e-24
Identity = 56/109 (51.38%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:    1 IDLAYSSVLCLTSFQQAAYTGLLGVFLKPRAVCLVVCDAGAFGQQ-GGGANAKIEKDIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLASRNTAGT-RSAENRCSL 321
            ++L  SSV       QAAYTGLL +FL PR+VC++VC+A AFGQQ       +I +D R L+ELRVC+WLR ++ RVPD+DA  VATKCDL   N A   R  E  C +
Sbjct:  309 MELEGSSVRVYDCAGQAAYTGLLQMFLTPRSVCVLVCNAEAFGQQRANDTGGQIMEDCRKLEELRVCEWLRSIARRVPDNDAILVATKCDLVGGNAAEVGRRMEQACRM 417
[Close]
BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 5.020e-24
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    1 IDLAYSSVLCLTSFQQAAYTGLLGVFLKPRAVCLVVCDAGAFGQQGGG-ANAKIEKDIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLASRN 282
            ++L  SSV       Q AYTGLL +FL PRAVC++VC+AG FGQQ    +N ++ +D R L+ELRVCDWLR +S RVP++D   VATKCDLA  N
Sbjct:  237 MELEGSSVRVYDCAGQVAYTGLLQMFLTPRAVCVLVCNAGKFGQQTRSESNDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCDLAGGN 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 9.410e-24
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 1 
Query:    1 IDLAYSSVLCLTSFQQAAYTGLLGVFLKPRAVCLVVCDAGAFGQQGGGANA-KIEKDIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLASRNTA 288
            ++L  SSV       Q AYTGLL +FL PR+VC++VC+A AFGQQ    N+ ++E+D R L+ELRVCDWLR +S RVP +D   V TKCDLA  N A
Sbjct:  187 MELEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAAAFGQQLERKNSGEVEEDCRKLEELRVCDWLRSISRRVPHNDVILVVTKCDLAGGNAA 283
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BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.770e-23
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   46 QAAYTGLLGVFLKPRAVCLVVCDAGAFGQQGGGA--NAKIEKDIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLA 273
            Q AYTGLL +FL PRAV L+VCD GAFGQ+ G    + +++KD+  L ELRVCDWLR +S+R+PDSD   VATKCDLA
Sbjct:  342 QVAYTGLLQMFLSPRAVSLLVCDLGAFGQRDGTLIHSDQLKKDLSKLQELRVCDWLRSLSFRIPDSDVVVVATKCDLA 419
[Close]
BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.770e-23
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:    1 IDLAYSSVLCLTSFQQAAYTGLLGVFLKPRAVCLVVCDAGAFGQQGGGANA-KIEK-DIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLASRNTA--GTRSAENRC 315
            ++L  SSV       Q AYTGLL +FL PR+VC++VC+AG FGQ+ G  +  ++E+ D R L+ELRVCDWLR +S RVPD+D   VATKCDL   N    G+R  EN C
Sbjct:  451 MELDGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGQRRGSEDCGEVEQEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLVGGNAGEIGSRM-ENSC 558
[Close]
BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.420e-23
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    1 IDLAYSSVLCLTSFQQAAYTGLLGVFLKPRAVCLVVCDAGAFGQQGGGANA-KIEKDIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLASRN 282
            ++L  SSV       Q AYTGLL +FL PR+VC++VC+AG FG+Q G  N  ++E+D R L+ LRVC+WLR +S RVPD++   VATKCDLA  N
Sbjct:  388 MELEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGEQLGSDNIDQVEEDCRKLEALRVCNWLRSISRRVPDTEVILVATKCDLAGGN 482
[Close]
BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.480e-23
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 IDLAYSSVLCLTSFQQAAYTGLLGVFLKPRAVCLVVCDAGAFGQQGGGANA--KIEKDIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLASRN 282
            ++L  SS+       Q AYTGLL +FL PRAVC++VC+A +FGQQ G      ++++D R L+ELRVCDWLR +S RVPD+D   VATKCD    N
Sbjct:  380 MELEGSSIRVYDCAGQVAYTGLLQMFLTPRAVCVIVCNAESFGQQRGTCETGGQVKEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDSVGGN 475
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig711.16961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FZA1_ECTSI4.210e-2552.29LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5KJL6_9PHAE4.810e-2557.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL89_ECTSI5.820e-2551.85LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUC3_ECTSI2.010e-2451.38LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSZ8_9PHAE5.020e-2455.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI9.410e-2454.64LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FL98_ECTSI1.770e-2362.82LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LF46_ECTSI1.770e-2352.29LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LJS7_ECTSI2.420e-2353.68LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUD0_ECTSI4.480e-2352.08LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig711contigM-pyrifera_M_contig711:32493..32895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue2.1e-21
Seed eggNOG ortholog2880.D7FL89
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size403
Cds size369
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816605.4493577-UTR-M-pyrifera_M_contig711:32492..325261622816605.4493577-UTR-M-pyrifera_M_contig711:32492..32526Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig711 32493..32526 -
1692278073.1504352-UTR-M-pyrifera_M_contig711:32492..325261692278073.1504352-UTR-M-pyrifera_M_contig711:32492..32526Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig711 32493..32526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816605.460725-CDS-M-pyrifera_M_contig711:32526..328951622816605.460725-CDS-M-pyrifera_M_contig711:32526..32895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig711 32527..32895 -
1692278073.1617634-CDS-M-pyrifera_M_contig711:32526..328951692278073.1617634-CDS-M-pyrifera_M_contig711:32526..32895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig711 32527..32895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig711.16961.1prot_M-pyrifera_M_contig711.16961.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig711 32527..32895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig711.16961.1

>prot_M-pyrifera_M_contig711.16961.1 ID=prot_M-pyrifera_M_contig711.16961.1|Name=mRNA_M-pyrifera_M_contig711.16961.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
IDLAYSSVLCLTSFQQAAYTGLLGVFLKPRAVCLVVCDAGAFGQQGGGAN
AKIEKDIRNLDELRVCDWLRPVSYRVPDSDAFQVATKCDLASRNTAGTRS
AENRCSLSGVTGKPDPRWHEAC*
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mRNA from alignment at M-pyrifera_M_contig711:32493..32895-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig711.16961.1 ID=mRNA_M-pyrifera_M_contig711.16961.1|Name=mRNA_M-pyrifera_M_contig711.16961.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=403bp|location=Sequence derived from alignment at M-pyrifera_M_contig711:32493..32895- (Macrocystis pyrifera P11B4 male)
ATCGATTTAGCATATTCCAGTGTCCTCTGCTTGACGAGTTTTCAACAAGC
TGCCTACACGGGGCTGCTGGGGGTATTTCTGAAACCACGCGCCGTTTGCC
TTGTGGTGTGCGATGCCGGGGCGTTCGGACAGCAAGGCGGAGGGGCGAAT
GCCAAGATCGAAAAGGATATCCGCAACCTCGACGAATTGCGTGTATGCGA
TTGGCTACGACCCGTCTCCTACCGCGTTCCCGATAGTGACGCGTTCCAAG
TGGCCACCAAATGCGACCTCGCGAGCAGGAATACCGCAGGCACACGTAGC
GCAGAGAATCGATGCAGCCTGTCCGGCGTGACTGGCAAGCCGGACCCACG
TTGGCACGAGGCCTGCTAGGCTGGAAGACCAGGTGTGCCTCACGACCTGC
TGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig711:32493..32895-

>mRNA_M-pyrifera_M_contig711.16961.1 ID=mRNA_M-pyrifera_M_contig711.16961.1|Name=mRNA_M-pyrifera_M_contig711.16961.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig711:32493..32895- (Macrocystis pyrifera P11B4 male)
ATCGATTTAGCATATTCCAGTGTCCTCTGCTTGACGAGTTTTCAACAAGC
TGCCTACACGGGGCTGCTGGGGGTATTTCTGAAACCACGCGCCGTTTGCC
TTGTGGTGTGCGATGCCGGGGCGTTCGGACAGCAAGGCGGAGGGGCGAAT
GCCAAGATCGAAAAGGATATCCGCAACCTCGACGAATTGCGTGTATGCGA
TTGGCTACGACCCGTCTCCTACCGCGTTCCCGATAGTGACGCGTTCCAAG
TGGCCACCAAATGCGACCTCGCGAGCAGGAATACCGCAGGCACACGTAGC
GCAGAGAATCGATGCAGCCTGTCCGGCGTGACTGGCAAGCCGGACCCACG
TTGGCACGAGGCCTGCTAGATCGATTTAGCATATTCCAGTGTCCTCTGCT
TGACGAGTTTTCAACAAGCTGCCTACACGGGGCTGCTGGGGGTATTTCTG
AAACCACGCGCCGTTTGCCTTGTGGTGTGCGATGCCGGGGCGTTCGGACA
GCAAGGCGGAGGGGCGAATGCCAAGATCGAAAAGGATATCCGCAACCTCG
ACGAATTGCGTGTATGCGATTGGCTACGACCCGTCTCCTACCGCGTTCCC
GATAGTGACGCGTTCCAAGTGGCCACCAAATGCGACCTCGCGAGCAGGAA
TACCGCAGGCACACGTAGCGCAGAGAATCGATGCAGCCTGTCCGGCGTGA
CTGGCAAGCCGGACCCACGTTGGCACGAGGCCTGCTAG
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