mRNA_M-pyrifera_M_contig71003.16949.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71003.16949.1
Unique NamemRNA_M-pyrifera_M_contig71003.16949.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Match: A0A7S0J417_9EUKA (ADP-ribosylation factor n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S0J417_9EUKA)

HSP 1 Score: 215 bits (548), Expect = 3.580e-69
Identity = 101/132 (76.52%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVDRFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSLERRRWWVQACCATNGDGVYDGLDWLVSALSSA 396
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNT GVIFVVDSND DR  +AR+ELH+ML+EDELREA LLVFANKQDLP A +A EI++ L L SL +R W++Q+ CAT GDG+Y+GLDWL +ALS A
Sbjct:   66 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGVIFVVDSNDRDRVGEARDELHRMLNEDELREAILLVFANKQDLPNAMNAAEITDKLGLHSLRQRNWYIQSTCATTGDGLYEGLDWLSTALSKA 197          
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Match: A0A6U7L6G1_9EUKA (ADP-ribosylation factor n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A6U7L6G1_9EUKA)

HSP 1 Score: 213 bits (542), Expect = 6.280e-69
Identity = 99/132 (75.00%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVDRFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSLERRRWWVQACCATNGDGVYDGLDWLVSALSSA 396
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNT GVIFVVDSND DR  +AR+ELH+ML+EDELREA LLVFANKQDLP A +A EI++ L L SL +R W++Q+ CAT GDG+Y+GLDWL ++L+ A
Sbjct:   19 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGVIFVVDSNDRDRVGEARDELHRMLNEDELREAMLLVFANKQDLPNAMNAAEITDKLGLHSLRQRNWYIQSTCATTGDGLYEGLDWLSNSLAKA 150          
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Match: M5WK44_PRUPE (ADP-ribosylation factor n=27 Tax=Mesangiospermae TaxID=1437183 RepID=M5WK44_PRUPE)

HSP 1 Score: 213 bits (543), Expect = 1.220e-68
Identity = 99/131 (75.57%), Postives = 114/131 (87.02%), Query Frame = 1
Query:    1 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVDRFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSLERRRWWVQACCATNGDGVYDGLDWLVSALSS 393
            IGFNVETVEYKN+SFTVWDVGGQDKIRPLWRHY+QNT G+IFVVDSND DR  +AR+ELH+MLSEDELREA LLVFANKQDLP A S  EI++ L L SL +RRW++QA CAT+G G+Y+GLDWL S +SS
Sbjct:   49 IGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVSEARDELHRMLSEDELREATLLVFANKQDLPNAMSVSEITDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNISS 179          
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Match: A0A7J6R8A1_PEROL (Arf GTPase arf1 n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6R8A1_PEROL)

HSP 1 Score: 217 bits (552), Expect = 1.290e-68
Identity = 98/132 (74.24%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVDRFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSLERRRWWVQACCATNGDGVYDGLDWLVSALSSA 396
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNT G+IFVVDSND DR DDA+EELH+ML+E+ELR+AC+LVFANKQDLP A +A E++E L L SL  R W++Q+ CAT GDG+Y+GLDWL   L++A
Sbjct:  151 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRMDDAKEELHRMLNEEELRDACVLVFANKQDLPNAMTAAEVTEKLGLHSLRHRNWYIQSACATTGDGLYEGLDWLSKTLANA 282          
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Match: A0A662WKF7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKF7_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.610e-68
Identity = 97/132 (73.48%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    1 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVDRFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSLERRRWWVQACCATNGDGVYDGLDWLVSALSSA 396
            +GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNT G+IFVVDSND DR D AR+ELH+ML+EDELR++ LLVFANKQDLP A SA E+++ L L  L  R+W++QACCAT GDG+Y+GLDWL + L  A
Sbjct:   37 VGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSVLLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATLQKA 168          
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Match: A0A7S1TNC0_9STRA (ADP-ribosylation factor n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNC0_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.740e-68
Identity = 97/130 (74.62%), Postives = 112/130 (86.15%), Query Frame = 1
Query:    1 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVDRFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSLERRRWWVQACCATNGDGVYDGLDWLVSALS 390
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNT GVIFVVDSND DR D AR+ELH+M+ EDELREA LLVFANKQDLP A +A E+++ L L  +  R+W++QACCAT GDG+Y+GLDWL + L+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGVIFVVDSNDRDRVDAARDELHRMMGEDELREATLLVFANKQDLPNAMNAAELTQKLGLHDMRHRQWYIQACCATTGDGLYEGLDWLSATLN 178          
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Match: A0A7C8ZII1_OPUST (ADP-ribosylation factor n=3 Tax=Pentapetalae TaxID=1437201 RepID=A0A7C8ZII1_OPUST)

HSP 1 Score: 212 bits (540), Expect = 3.390e-68
Identity = 96/131 (73.28%), Postives = 116/131 (88.55%), Query Frame = 1
Query:    1 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVDRFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSLERRRWWVQACCATNGDGVYDGLDWLVSALSS 393
            IGFNVETVEYKN+SFTVWDVGGQDKIRPLWRHY+QNT G+IFVVDSND DR  +AR+ELH+ML+EDELR+A LLVFANKQDLP A S  EI++ L L SL +RRW++QACCAT+G+G+Y+GLDWL + ++S
Sbjct:   49 IGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVTEARDELHRMLNEDELRDATLLVFANKQDLPNAMSVAEITDKLGLHSLRQRRWYIQACCATSGEGLYEGLDWLSNNIAS 179          
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Match: A0A7S2W572_9STRA (ADP-ribosylation factor n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W572_9STRA)

HSP 1 Score: 213 bits (541), Expect = 3.890e-68
Identity = 98/130 (75.38%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVDRFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSLERRRWWVQACCATNGDGVYDGLDWLVSALS 390
            IGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYYQNT G+IFVVDSND DR D AR+ELH+ML+EDELRE+ LLVFANKQDLP A SA E++E L L +L  R W++QACCAT GDG+Y+GLDWL + L+
Sbjct:   63 IGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRIDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTEKLGLHNLRGRSWYIQACCATTGDGLYEGLDWLSATLT 192          
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Match: UPI001ED248FB (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=UPI001ED248FB)

HSP 1 Score: 210 bits (534), Expect = 6.150e-68
Identity = 96/128 (75.00%), Postives = 111/128 (86.72%), Query Frame = 1
Query:    4 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVDRFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSLERRRWWVQACCATNGDGVYDGLDWLVSAL 387
            GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNT G+IFVVDSND DR D AR+ELH+ML+EDELR++ LLVFANKQDLP A SA E+++ L L  L  R+W++QACCAT GDG+Y+GLDWL + L
Sbjct:    4 GFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSVLLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATL 131          
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Match: M4BN95_HYAAE (ADP-ribosylation factor n=8 Tax=Oomycota TaxID=4762 RepID=M4BN95_HYAAE)

HSP 1 Score: 211 bits (538), Expect = 6.840e-68
Identity = 97/129 (75.19%), Postives = 112/129 (86.82%), Query Frame = 1
Query:    1 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVDRFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSLERRRWWVQACCATNGDGVYDGLDWLVSAL 387
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNT G+IFVVDSND DR D AR+ELH+ML+EDELR++ LLVFANKQDLP A SA E+++ L L  L  R+W++QACCAT GDG+Y+GLDWL + L
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSVLLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATL 177          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71003.16949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0J417_9EUKA3.580e-6976.52ADP-ribosylation factor n=2 Tax=Prymnesiophyceae T... [more]
A0A6U7L6G1_9EUKA6.280e-6975.00ADP-ribosylation factor n=1 Tax=Haptolina brevifil... [more]
M5WK44_PRUPE1.220e-6875.57ADP-ribosylation factor n=27 Tax=Mesangiospermae T... [more]
A0A7J6R8A1_PEROL1.290e-6874.24Arf GTPase arf1 n=1 Tax=Perkinsus olseni TaxID=325... [more]
A0A662WKF7_9STRA1.610e-6873.48Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S1TNC0_9STRA1.740e-6874.62ADP-ribosylation factor n=2 Tax=Phaeomonas parva T... [more]
A0A7C8ZII1_OPUST3.390e-6873.28ADP-ribosylation factor n=3 Tax=Pentapetalae TaxID... [more]
A0A7S2W572_9STRA3.890e-6875.38ADP-ribosylation factor n=2 Tax=Rhizochromulina ma... [more]
UPI001ED248FB6.150e-6875.00Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
M4BN95_HYAAE6.840e-6875.19ADP-ribosylation factor n=8 Tax=Oomycota TaxID=476... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71003contigM-pyrifera_M_contig71003:128..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue8.5e-53
Seed eggNOG ortholog2880.D7FGX4
Preferred nameArf1
KEGG koko:K07937,ko:K07977
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0070@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons1
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.77305-CDS-M-pyrifera_M_contig71003:127..5261622816604.77305-CDS-M-pyrifera_M_contig71003:127..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71003 128..526 +
1692278072.712506-CDS-M-pyrifera_M_contig71003:127..5261692278072.712506-CDS-M-pyrifera_M_contig71003:127..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71003 128..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71003.16949.1prot_M-pyrifera_M_contig71003.16949.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71003 128..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71003.16949.1

>prot_M-pyrifera_M_contig71003.16949.1 ID=prot_M-pyrifera_M_contig71003.16949.1|Name=mRNA_M-pyrifera_M_contig71003.16949.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTHGVIFVVDSNDVD
RFDDAREELHKMLSEDELREACLLVFANKQDLPKAKSAEEISEALNLRSL
ERRRWWVQACCATNGDGVYDGLDWLVSALSSA*
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mRNA from alignment at M-pyrifera_M_contig71003:128..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71003.16949.1 ID=mRNA_M-pyrifera_M_contig71003.16949.1|Name=mRNA_M-pyrifera_M_contig71003.16949.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig71003:128..526+ (Macrocystis pyrifera P11B4 male)
ATTGGGTTCAATGTGGAAACTGTAGAGTACAAGAACATTTCATTCACAGT GTGGGATGTAGGTGGACAGGACAAGATTCGTCCATTGTGGCGTCACTACT ACCAAAACACACATGGAGTGATTTTCGTGGTCGATTCCAACGATGTGGAT CGTTTCGATGATGCCCGTGAGGAACTGCACAAGATGTTGAGCGAAGATGA ACTTCGTGAAGCATGCTTGCTCGTGTTCGCAAACAAGCAAGATCTTCCAA AGGCAAAGTCTGCCGAAGAGATTTCTGAAGCACTCAACCTTCGTTCTCTT GAACGTCGTCGCTGGTGGGTCCAAGCCTGCTGTGCCACCAACGGTGATGG AGTGTACGATGGACTCGACTGGCTCGTGTCTGCACTCTCCAGTGCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71003:128..526+

>mRNA_M-pyrifera_M_contig71003.16949.1 ID=mRNA_M-pyrifera_M_contig71003.16949.1|Name=mRNA_M-pyrifera_M_contig71003.16949.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig71003:128..526+ (Macrocystis pyrifera P11B4 male)
ATTGGGTTCAATGTGGAAACTGTAGAGTACAAGAACATTTCATTCACAGT
GTGGGATGTAGGTGGACAGGACAAGATTCGTCCATTGTGGCGTCACTACT
ACCAAAACACACATGGAGTGATTTTCGTGGTCGATTCCAACGATGTGGAT
CGTTTCGATGATGCCCGTGAGGAACTGCACAAGATGTTGAGCGAAGATGA
ACTTCGTGAAGCATGCTTGCTCGTGTTCGCAAACAAGCAAGATCTTCCAA
AGGCAAAGTCTGCCGAAGAGATTTCTGAAGCACTCAACCTTCGTTCTCTT
GAACGTCGTCGCTGGTGGGTCCAAGCCTGCTGTGCCACCAACGGTGATGG
AGTGTACGATGGACTCGACTGGCTCGTGTCTGCACTCTCCAGTGCCTAAA
TTGGGTTCAATGTGGAAACTGTAGAGTACAAGAACATTTCATTCACAGTG
TGGGATGTAGGTGGACAGGACAAGATTCGTCCATTGTGGCGTCACTACTA
CCAAAACACACATGGAGTGATTTTCGTGGTCGATTCCAACGATGTGGATC
GTTTCGATGATGCCCGTGAGGAACTGCACAAGATGTTGAGCGAAGATGAA
CTTCGTGAAGCATGCTTGCTCGTGTTCGCAAACAAGCAAGATCTTCCAAA
GGCAAAGTCTGCCGAAGAGATTTCTGAAGCACTCAACCTTCGTTCTCTTG
AACGTCGTCGCTGGTGGGTCCAAGCCTGCTGTGCCACCAACGGTGATGGA
GTGTACGATGGACTCGACTGGCTCGTGTCTGCACTCTCCAGTGCCTAA
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