mRNA_M-pyrifera_M_contig71001.16947.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71001.16947.1
Unique NamemRNA_M-pyrifera_M_contig71001.16947.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Match: A0A7C1U5H3_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C1U5H3_9BACT)

HSP 1 Score: 107 bits (267), Expect = 2.880e-26
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 AMDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIHDEDLLLTAY 180
            AMDRAE+VA  VTMKTPAGTF++CIRVEETSG+DP++KCYKTYAPGVGLI DEDLLL  Y
Sbjct:  255 AMDRAEIVADDVTMKTPAGTFENCIRVEETSGLDPDEKCYKTYAPGVGLIQDEDLLLVRY 314
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BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Match: A0A0S7YBF0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium DG_20 TaxID=1703413 RepID=A0A0S7YBF0_9BACT)

HSP 1 Score: 102 bits (253), Expect = 2.080e-25
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 AMDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIHDEDLLLTAY 180
            AMDRAE+++   T+KTPAGTFK+C+RVEETSG+DP + CYKTYAPG+GLI DEDLLLT Y
Sbjct:  156 AMDRAEILSTDATLKTPAGTFKNCLRVEETSGLDPGEICYKTYAPGIGLIQDEDLLLTEY 215
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BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Match: A0A7V7DWU9_9BACT (Flavodoxin-like domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V7DWU9_9BACT)

HSP 1 Score: 102 bits (254), Expect = 5.730e-24
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 AMDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIHDEDLLLTAYREA 189
            AMDRAE+++  VTMKTPAGTF++CIRVEETSGID  D CYKTYAPGVG+I D+DL+LT Y +A
Sbjct:  257 AMDRAEIISDDVTMKTPAGTFRNCIRVEETSGIDAGDICYKTYAPGVGIIQDDDLVLTKYTKA 319
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BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Match: A0A0S7XEJ8_9BACT (Uncharacterized protein n=1 Tax=Latescibacteria bacterium DG_63 TaxID=1703781 RepID=A0A0S7XEJ8_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 4.650e-18
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 AMDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIHDEDLLLTAY 180
            AMDRAE+++   T++TPAGTF+ C+++EET+ ++P DK YK YAPG+GLI DEDLLL  Y
Sbjct:  180 AMDRAEILSDRETVETPAGTFEKCLKIEETTPLEPTDKDYKYYAPGIGLIRDEDLLLKQY 239
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BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Match: A0A520G290_9BURK (Uncharacterized protein n=2 Tax=Variovorax TaxID=34072 RepID=A0A520G290_9BURK)

HSP 1 Score: 78.2 bits (191), Expect = 4.540e-16
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 AMDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIHDEDLLLTAY 180
            AMDRAE+V++G T KTPAGTF  C++V+E+S +D     YK +APG+GL+ DEDL LT Y
Sbjct:  169 AMDRAEIVSLGETCKTPAGTFSSCMKVKESSALDLLASEYKYHAPGIGLVRDEDLKLTRY 228
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BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Match: A0A2V8T6Q7_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8T6Q7_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 5.230e-16
Identity = 33/60 (55.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 AMDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIHDEDLLLTAY 180
            AMDR EVV+   ++KTPAG+F+DC+++EET+ ++P+ K YK +A G+G + DEDLLLT Y
Sbjct:  176 AMDRVEVVSDSESVKTPAGSFQDCVKIEETTPLEPHAKEYKIFARGIGTVQDEDLLLTKY 235
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BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Match: A0A7Y5CA15_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CA15_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 5.250e-16
Identity = 33/60 (55.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 AMDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIHDEDLLLTAY 180
            AMDRAE+VA+  T++TPAGTF+ C++V+E++ ++ +++ +K YAPG+GLI DEDLLLT +
Sbjct:  265 AMDRAEIVALDETLETPAGTFEHCLKVQESNPLEGDEEEFKLYAPGIGLIQDEDLLLTKF 324
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BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Match: A1VPA9_POLNA (Uncharacterized protein n=2 Tax=Polaromonas naphthalenivorans TaxID=216465 RepID=A1VPA9_POLNA)

HSP 1 Score: 77.8 bits (190), Expect = 7.560e-16
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 AMDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIHDEDLLLTAY 180
            AMDRAE+V++  T KTPAGTF +C++V+E S ID   + YK YAP +GL+ DEDL LT Y
Sbjct:  180 AMDRAEIVSLNETCKTPAGTFSNCLKVKEGSAIDITAREYKYYAPSIGLVRDEDLRLTKY 239
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BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Match: A0A3A4NH19_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3A4NH19_9DELT)

HSP 1 Score: 77.0 bits (188), Expect = 1.230e-15
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 AMDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIHDEDLLLTAY 180
            AMDRAE+V++  T  TPAGTF  C++V+E S ID   K YK YAPG+GLI DEDLLL  Y
Sbjct:  169 AMDRAEIVSLDETCTTPAGTFSGCMKVKEGSAIDILAKEYKYYAPGIGLIRDEDLLLVKY 228
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BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Match: A0A1F5AUJ5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Aminicenantes bacterium RBG_13_64_14 TaxID=1797271 RepID=A0A1F5AUJ5_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 6.700e-15
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 AMDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIHDEDLLLTAY 180
            AMDRAE+  +  T+KTPAG FKDC++V ET+ ++   K YK YAPGVGLI D  L+L  Y
Sbjct:  168 AMDRAEIAGLHETLKTPAGKFKDCLKVAETTPLEKGAKEYKLYAPGVGLIKDASLVLVEY 227
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71001.16947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1U5H3_9BACT2.880e-2681.67Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A0S7YBF0_9BACT2.080e-2573.33Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7V7DWU9_9BACT5.730e-2473.02Flavodoxin-like domain-containing protein n=1 Tax=... [more]
A0A0S7XEJ8_9BACT4.650e-1860.00Uncharacterized protein n=1 Tax=Latescibacteria ba... [more]
A0A520G290_9BURK4.540e-1658.33Uncharacterized protein n=2 Tax=Variovorax TaxID=3... [more]
A0A2V8T6Q7_9BACT5.230e-1655.00Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7Y5CA15_9BACT5.250e-1655.00Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A1VPA9_POLNA7.560e-1658.33Uncharacterized protein n=2 Tax=Polaromonas naphth... [more]
A0A3A4NH19_9DELT1.230e-1561.67Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1F5AUJ5_9BACT6.700e-1556.67Uncharacterized protein n=1 Tax=Candidatus Aminice... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71001contigM-pyrifera_M_contig71001:3..200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.1
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog365044.Pnap_2179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium- and calmodulin-responsive adenylate cyclase activity
EggNOG OGs1N0D3@1224,COG3212@1,COG3212@2
COG Functional cat.Q
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size195
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.6863449-UTR-M-pyrifera_M_contig71001:2..51622816604.6863449-UTR-M-pyrifera_M_contig71001:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71001 3..5 +
1692278072.665526-UTR-M-pyrifera_M_contig71001:2..51692278072.665526-UTR-M-pyrifera_M_contig71001:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71001 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.699-CDS-M-pyrifera_M_contig71001:5..2001622816604.699-CDS-M-pyrifera_M_contig71001:5..200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71001 6..200 +
1692278072.6757746-CDS-M-pyrifera_M_contig71001:5..2001692278072.6757746-CDS-M-pyrifera_M_contig71001:5..200Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71001 6..200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71001.16947.1prot_M-pyrifera_M_contig71001.16947.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71001 6..200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71001.16947.1

>prot_M-pyrifera_M_contig71001.16947.1 ID=prot_M-pyrifera_M_contig71001.16947.1|Name=mRNA_M-pyrifera_M_contig71001.16947.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MDRAEVVAIGVTMKTPAGTFKDCIRVEETSGIDPNDKCYKTYAPGVGLIH
DEDLLLTAYREASP*
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mRNA from alignment at M-pyrifera_M_contig71001:3..200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71001.16947.1 ID=mRNA_M-pyrifera_M_contig71001.16947.1|Name=mRNA_M-pyrifera_M_contig71001.16947.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig71001:3..200+ (Macrocystis pyrifera P11B4 male)
GCGATGGATCGGGCGGAAGTCGTGGCCATCGGTGTCACCATGAAGACGCC
AGCCGGCACCTTCAAAGATTGCATCCGAGTCGAGGAAACCTCTGGTATTG
ATCCGAATGACAAGTGCTACAAAACATACGCACCCGGCGTAGGTCTCATC
CACGACGAAGATCTCCTACTCACCGCATACCGCGAGGCAAGCCCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71001:3..200+

>mRNA_M-pyrifera_M_contig71001.16947.1 ID=mRNA_M-pyrifera_M_contig71001.16947.1|Name=mRNA_M-pyrifera_M_contig71001.16947.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig71001:3..200+ (Macrocystis pyrifera P11B4 male)
ATGGATCGGGCGGAAGTCGTGGCCATCGGTGTCACCATGAAGACGCCAGC
CGGCACCTTCAAAGATTGCATCCGAGTCGAGGAAACCTCTGGTATTGATC
CGAATGACAAGTGCTACAAAACATACGCACCCGGCGTAGGTCTCATCCAC
GACGAAGATCTCCTACTCACCGCATACCGCGAGGCAAGCCCGTGAATGGA
TCGGGCGGAAGTCGTGGCCATCGGTGTCACCATGAAGACGCCAGCCGGCA
CCTTCAAAGATTGCATCCGAGTCGAGGAAACCTCTGGTATTGATCCGAAT
GACAAGTGCTACAAAACATACGCACCCGGCGTAGGTCTCATCCACGACGA
AGATCTCCTACTCACCGCATACCGCGAGGCAAGCCCGTGA
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