mRNA_M-pyrifera_M_contig7097.16939.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7097.16939.1
Unique NamemRNA_M-pyrifera_M_contig7097.16939.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Match: D8LBD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD9_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 2.690e-83
Identity = 135/164 (82.32%), Postives = 149/164 (90.85%), Query Frame = 1
Query:    1 MSRGSAFRSTGESKRQARVSQLVTGELAKILRQGHGIKTKDRIDDDVRCKIAVVDVDMSPDLRTAKVFISVYGDVMEKREAYAWCVKNTKPIRMALATELKGMKRVPELFFRDTDIGAAVDLMALIDRVSDSDEASAAAARESSGNDEIEGFEGLTEEDFFTFD 492
            M+RGS FRST ESKRQARVSQL+TGELAKILR GHGIKTKD+IDDDVRC+IAVVDVDMSPDLR+AKVFISVYGDV+EKREAYAWCVKNTK IRMAL  ELKGMKRVPELFF+DTDI AAVDLMALIDRVS  ++ + AA R+  G +EIEGFEG+TE+DFFTFD
Sbjct:   73 MARGSTFRSTTESKRQARVSQLLTGELAKILRLGHGIKTKDKIDDDVRCRIAVVDVDMSPDLRSAKVFISVYGDVLEKREAYAWCVKNTKAIRMALCAELKGMKRVPELFFKDTDISAAVDLMALIDRVSGDEDGNEAALRDD-GEEEIEGFEGVTEDDFFTFD 235          
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Match: A0A835ZHE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE8_9STRA)

HSP 1 Score: 149 bits (377), Expect = 7.910e-42
Identity = 77/130 (59.23%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 MSRGSAFRSTG-ESKRQARVSQLVTGELAKILRQGHGIKTKDRIDDDVRCKIAVVDVDMSPDLRTAKVFISVYGDVMEKREAYAWCVKNTKPIRMALATELKGMKRVPELFFRDTDIGAAVDLMALIDRV 387
            M R + F++   ESKRQAR+SQL+T ELA I+R GH +K    + D++R KI++VDV++SPDLR A++F+SVYGD +EKREAY WCV+NT  IR AL+  LK MK VPEL F+ TDIGAAVD+M LI +V
Sbjct:   56 MGRANRFKAARPESKRQARISQLLTAELASIIRLGHHVKGSKALSDELRSKISIVDVNVSPDLRNARIFVSVYGDRLEKREAYGWCVRNTGGIRFALSQRLKDMKGVPELTFQQTDIGAAVDVMHLIGKV 185          
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Match: A0A7S2DN30_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DN30_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.050e-35
Identity = 67/129 (51.94%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 MSRGSAFRSTGESKRQARVSQLVTGELAKILRQGHGIKTKDRIDDDVRCKIAVVDVDMSPDLRTAKVFISVYGDVMEKREAYAWCVKNTKPIRMALATELKGMKRVPELFFRDTDIGAAVDLMALIDRV 387
            MSRG+A     ESKRQ RVSQ++  E+  ILR+G     K  I D +R KI++VDV MSPDLRTAKV++SV+GD++++R+AY+W V N+K I+ +LA  L  MK VP+L+F++TD+ AAVD+M  I+ +
Sbjct:   45 MSRGNAVSKGRESKRQGRVSQVIRSEIVTILRRGSMKYMKKDIGDTLRQKISIVDVHMSPDLRTAKVYVSVFGDIVDRRQAYSWLVMNSKAIKHSLAQSLSAMKTVPDLYFKETDLAAAVDVMTTIESI 173          
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Match: A0A7S1U3D0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3D0_9STRA)

HSP 1 Score: 121 bits (303), Expect = 4.990e-31
Identity = 58/124 (46.77%), Postives = 88/124 (70.97%), Query Frame = 1
Query:   10 GSAFRSTGESKRQARVSQLVTGELAKILRQGHGIKTKDRIDDDVRCKIAVVDVDMSPDLRTAKVFISVYGDVMEKREAYAWCVKNTKPIRMALATELKGMKRVPELFFRDTDIGAAVDLMALID 381
            GS  R   ES+RQ+R++QLV  E++ IL  GHG+++   ID ++R  I++VDVD+SPDLR   +++SV GD   KREA+AW V++T+ +R  LA   +G+KR+PE+ F+  D+ AAVD+  LI+
Sbjct:   33 GSLVRRRDESRRQSRIAQLVKAEVSAILLTGHGVRSPRDIDGELRKAISIVDVDVSPDLRNCNIYVSVRGDGAGKREAFAWLVRSTRALRHVLAQRNRGLKRIPEILFKQADVSAAVDVFRLIE 156          
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Match: A0A7R9W0U4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W0U4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.700e-28
Identity = 64/131 (48.85%), Postives = 90/131 (68.70%), Query Frame = 1
Query:   13 SAFRSTGESKRQARVSQLVTGELAKILRQGHGIKTKDRIDDDVRCKIAVVDVDMSPDLRTAKVFISVYG----DVMEKREAYAWCVKNTKPIRMALATELKGMKRVPELFFRDTDIGAAVDLMALIDRVSD 393
            S + ++  SKRQ RV  +V  ELA+I++ G  IK  D IDD++R +I VV+ D+SPDLR A+V +S+ G      ++KR AY+W V++TK IR A+A  LK MK  P+L F   D+GAAVD+M LI++VSD
Sbjct:   47 SRYAASDRSKRQERVGHVVRSELARIIQAGFPIKNVDPIDDELRRRINVVNADVSPDLRHARVTVSIIGRGETSTVDKRRAYSWLVRSTKMIRHAMAQRLKHMKVCPDLKFVQADVGAAVDVMRLIEKVSD 177          
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Match: A0A7S2SUM5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM5_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.070e-27
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    7 RGSAFRSTGESKRQARVSQLVTGELAKILRQGHGIKTKDRIDDDVRCKIAVVDVDMSPDLRTAKVFISVYGDVMEKREAYAWCVKNTKPIRMALATELKGMKRVPELFFRDTDIGAAVDLMALIDRVSD 393
            RG       ESKRQARV+QLV  EL++++RQG    TK  I +  R KI++VDV MSPDLR AKVF+SV+    E R+AYAW V+++   R  L+ EL+ M+ VP L FR  D+  AVD+M  ID ++D
Sbjct:   57 RGPGVGRRDESKRQARVAQLVRAELSQVIRQGTRANTKG-ITEATRQKISIVDVHMSPDLRNAKVFVSVFASGPESRQAYAWLVQSSGAFRHELSQELRHMRSVPALTFRRADVAEAVDVMVAIDNLND 184          
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Match: A0A1Z5KIK3_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KIK3_FISSO)

HSP 1 Score: 107 bits (266), Expect = 7.580e-26
Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1
Query:   37 SKRQARVSQLVTGELAKILRQGHGIKTKDRIDDDVRCKIAVVDVDMSPDLRTAKVFISVYGDV------MEKREAYAWCVKNTKPIRMALATELKGMKRVPELFFRDTDIGAAVDLMALIDRVS 390
            SKRQ RV QLV  EL KIL QG   + +  +D D+R +I+VV  D+SPDLR A++ ISV   +      M+KR AYAW V N KP+R AL+ +L  MK  PEL F   D+ AAVD+M LID++S
Sbjct:   11 SKRQERVGQLVRTELGKILHQGSASRAE-FLDADLRQRISVVKADVSPDLRQARISISVSASLAREDTAMDKRRAYAWLVNNAKPLRHALSQKLSHMKSCPELKFVQVDVAAAVDVMYLIDKIS 133          
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Match: A0A7S2NYX9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NYX9_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.090e-25
Identity = 62/131 (47.33%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   34 ESKRQARVSQLVTGELAKILRQGHGIKTKD-RIDDDVRCKIAVVDVDMSPDLRTAKVFISVYGD------------VMEKREAYAWCVKNTKPIRMALATELKGMKRVPELFFRDTDIGAAVDLMALIDRV 387
            +SKRQ RV QLV  E+A I++ GH IK  D  +D D+R +I+VV+ D+SPDLR A++ +SV               V+EKR AY+W VK+TK IR ALA  L  MK +P L F   D+GAAVD+M  I+ +
Sbjct:   66 KSKRQFRVGQLVRSEIASIIKLGHEIKHTDGSLDSDLRLRISVVNADVSPDLRQARITVSVISKPNTDETAKLSDTVVEKRVAYSWLVKHTKNIRHALAQRLSHMKTIPNLTFAQADVGAAVDVMNKINNI 196          
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Match: A0A7S2UPV8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPV8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.280e-24
Identity = 60/133 (45.11%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   13 SAFRSTGESKRQARVSQLVTGELAKILRQGHGIKTKDRIDDDVRCKIAVVDVDMSPDLRTAKVFISVYGD--------VMEKREAYAWCVKNTKPIRMALATELKGMKRVPELFFRDTDIGAAVDLMALIDRV 387
            S + S   SKRQ RV  LV  E++ IL   H IK  D ++ ++R +I+VV+VD+SPDL  A++ +S+ G         V+++R AY+W V++TK IR ALA  L  MK VP L F   D+GAAVD+M LI++V
Sbjct:   55 SRYGSQDRSKRQERVGHLVRAEISSILTLSHEIKHSDYLEGELRKRISVVNVDVSPDLAQARITVSLVGGNHDTKEDAVVDQRRAYSWLVRSTKMIRHALAQRLSHMKGVPNLTFVLADVGAAVDVMQLIEKV 187          
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Match: B7FY13_PHATC (Chitinase glycoside hydrolase family 18, ribosome-binding factor n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FY13_PHATC)

HSP 1 Score: 100 bits (249), Expect = 1.080e-22
Identity = 62/135 (45.93%), Postives = 83/135 (61.48%), Query Frame = 1
Query:   22 RSTGESKRQARVSQLVTGELAKILRQGHGIKTKDR--IDDDVRCKIAVVDVDMSPDLRTAKVFISV----------YGDVMEKREAYAWCVKNTKPIRMALATELKGMKRVPELFFRDTDIGAAVDLMALIDRVS 390
            ++T  SKRQ RV  LV  E++ IL  G  IK +D   +D ++R +I+VV  D+SPDLR A++ +SV          Y   ++KR AYAW V+NTKPIR  LA  +  MK  P L F   D+ AAVD+M LID+VS
Sbjct:   64 KNTERSKRQERVGHLVRTEISNIL-HGGVIKGQDAEYLDAELRQRISVVSADISPDLRQARISVSVRAPPRNDQAEYNPAVDKRRAYAWLVRNTKPIRHTLAQRMSHMKSCPNLSFVQVDVAAAVDVMYLIDKVS 197          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7097.16939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBD9_ECTSI2.690e-8382.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHE8_9STRA7.910e-4259.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2DN30_9STRA5.050e-3551.94Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S1U3D0_9STRA4.990e-3146.77Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9W0U4_9STRA1.700e-2848.85Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2SUM5_9STRA1.070e-2749.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5KIK3_FISSO7.580e-2650.81Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2NYX9_9STRA6.090e-2547.33Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2UPV8_9STRA7.280e-2445.11Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B7FY13_PHATC1.080e-2245.93Chitinase glycoside hydrolase family 18, ribosome-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7097contigM-pyrifera_M_contig7097:11308..11877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.3
Seed ortholog evalue1.7e-67
Seed eggNOG ortholog2880.D8LBD9
KEGG koko:K02834
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribosome-binding factor A
EggNOG OGs2CYHW@1,2S4H5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size570
Cds size570
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.1524363-CDS-M-pyrifera_M_contig7097:11307..118771622816604.1524363-CDS-M-pyrifera_M_contig7097:11307..11877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7097 11308..11877 -
1692278072.295819-CDS-M-pyrifera_M_contig7097:11307..118771692278072.295819-CDS-M-pyrifera_M_contig7097:11307..11877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7097 11308..11877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7097.16939.1prot_M-pyrifera_M_contig7097.16939.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7097 11308..11877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7097.16939.1

>prot_M-pyrifera_M_contig7097.16939.1 ID=prot_M-pyrifera_M_contig7097.16939.1|Name=mRNA_M-pyrifera_M_contig7097.16939.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
MSRGSAFRSTGESKRQARVSQLVTGELAKILRQGHGIKTKDRIDDDVRCK
IAVVDVDMSPDLRTAKVFISVYGDVMEKREAYAWCVKNTKPIRMALATEL
KGMKRVPELFFRDTDIGAAVDLMALIDRVSDSDEASAAAARESSGNDEIE
GFEGLTEEDFFTFDFDENDEDEDNVGFDIEEEDGDGDLQ*
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mRNA from alignment at M-pyrifera_M_contig7097:11308..11877-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7097.16939.1 ID=mRNA_M-pyrifera_M_contig7097.16939.1|Name=mRNA_M-pyrifera_M_contig7097.16939.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig7097:11308..11877- (Macrocystis pyrifera P11B4 male)
ATGTCGCGGGGCAGCGCTTTTCGGTCCACCGGGGAGTCGAAGAGACAAGC TCGCGTATCTCAGCTCGTGACGGGAGAACTCGCAAAGATTTTGAGGCAGG GGCACGGGATCAAAACGAAGGACAGAATTGACGACGACGTGCGTTGCAAA ATAGCCGTGGTTGACGTCGACATGTCACCAGACCTACGGACAGCGAAGGT GTTCATCTCTGTCTACGGGGACGTGATGGAGAAGCGCGAGGCCTACGCGT GGTGCGTGAAGAACACCAAGCCGATCAGGATGGCGCTGGCGACGGAGCTG AAGGGGATGAAGCGAGTGCCGGAACTGTTTTTCAGGGACACGGACATCGG CGCGGCGGTCGATTTGATGGCGCTGATTGACAGGGTTTCGGACAGCGACG AAGCTAGCGCGGCGGCGGCGAGAGAGAGCAGCGGCAACGACGAGATAGAA GGGTTCGAGGGCCTGACAGAGGAAGATTTCTTCACGTTCGACTTCGACGA GAATGATGAGGACGAGGATAATGTCGGGTTTGATATTGAAGAAGAGGATG GTGACGGTGACTTGCAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7097:11308..11877-

>mRNA_M-pyrifera_M_contig7097.16939.1 ID=mRNA_M-pyrifera_M_contig7097.16939.1|Name=mRNA_M-pyrifera_M_contig7097.16939.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig7097:11308..11877- (Macrocystis pyrifera P11B4 male)
ATGTCGCGGGGCAGCGCTTTTCGGTCCACCGGGGAGTCGAAGAGACAAGC
TCGCGTATCTCAGCTCGTGACGGGAGAACTCGCAAAGATTTTGAGGCAGG
GGCACGGGATCAAAACGAAGGACAGAATTGACGACGACGTGCGTTGCAAA
ATAGCCGTGGTTGACGTCGACATGTCACCAGACCTACGGACAGCGAAGGT
GTTCATCTCTGTCTACGGGGACGTGATGGAGAAGCGCGAGGCCTACGCGT
GGTGCGTGAAGAACACCAAGCCGATCAGGATGGCGCTGGCGACGGAGCTG
AAGGGGATGAAGCGAGTGCCGGAACTGTTTTTCAGGGACACGGACATCGG
CGCGGCGGTCGATTTGATGGCGCTGATTGACAGGGTTTCGGACAGCGACG
AAGCTAGCGCGGCGGCGGCGAGAGAGAGCAGCGGCAACGACGAGATAGAA
GGGTTCGAGGGCCTGACAGAGGAAGATTTCTTCACGTTCGACTTCGACGA
GAATGATGAGGACGAGGATAATGTCGGGTTTGATATTGAAGAAGAGGATG
GTGACGGTGACTTGCAGTAGATGTCGCGGGGCAGCGCTTTTCGGTCCACC
GGGGAGTCGAAGAGACAAGCTCGCGTATCTCAGCTCGTGACGGGAGAACT
CGCAAAGATTTTGAGGCAGGGGCACGGGATCAAAACGAAGGACAGAATTG
ACGACGACGTGCGTTGCAAAATAGCCGTGGTTGACGTCGACATGTCACCA
GACCTACGGACAGCGAAGGTGTTCATCTCTGTCTACGGGGACGTGATGGA
GAAGCGCGAGGCCTACGCGTGGTGCGTGAAGAACACCAAGCCGATCAGGA
TGGCGCTGGCGACGGAGCTGAAGGGGATGAAGCGAGTGCCGGAACTGTTT
TTCAGGGACACGGACATCGGCGCGGCGGTCGATTTGATGGCGCTGATTGA
CAGGGTTTCGGACAGCGACGAAGCTAGCGCGGCGGCGGCGAGAGAGAGCA
GCGGCAACGACGAGATAGAAGGGTTCGAGGGCCTGACAGAGGAAGATTTC
TTCACGTTCGACTTCGACGAGAATGATGAGGACGAGGATAATGTCGGGTT
TGATATTGAAGAAGAGGATGGTGACGGTGACTTGCAGTAG
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