mRNA_M-pyrifera_M_contig7096.16937.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7096.16937.1
Unique NamemRNA_M-pyrifera_M_contig7096.16937.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7096.16937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7096contigM-pyrifera_M_contig7096:1288..1840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size553
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.0172365-CDS-M-pyrifera_M_contig7096:1287..16291622816604.0172365-CDS-M-pyrifera_M_contig7096:1287..1629Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7096 1288..1629 +
1692278072.2373075-CDS-M-pyrifera_M_contig7096:1287..16291692278072.2373075-CDS-M-pyrifera_M_contig7096:1287..1629Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7096 1288..1629 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.0305696-UTR-M-pyrifera_M_contig7096:1629..18401622816604.0305696-UTR-M-pyrifera_M_contig7096:1629..1840Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7096 1630..1840 +
1692278072.2477217-UTR-M-pyrifera_M_contig7096:1629..18401692278072.2477217-UTR-M-pyrifera_M_contig7096:1629..1840Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7096 1630..1840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7096.16937.1prot_M-pyrifera_M_contig7096.16937.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7096 1288..1629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7096.16937.1

>prot_M-pyrifera_M_contig7096.16937.1 ID=prot_M-pyrifera_M_contig7096.16937.1|Name=mRNA_M-pyrifera_M_contig7096.16937.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
PHYYFHTLSAQLTFSRRPRALVHLPILGLLRLQLTAVSAFFRPDQAVRFP
QKWLSRLEFNTNNATPTHADLYLLTLRTRTWFQRVFLPQPQDLKNLQLNP
RLPTGSSSSVCIV*
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mRNA from alignment at M-pyrifera_M_contig7096:1288..1840+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7096.16937.1 ID=mRNA_M-pyrifera_M_contig7096.16937.1|Name=mRNA_M-pyrifera_M_contig7096.16937.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=553bp|location=Sequence derived from alignment at M-pyrifera_M_contig7096:1288..1840+ (Macrocystis pyrifera P11B4 male)
CCACATTATTACTTTCACACACTTTCGGCGCAGTTGACTTTCTCACGTCG
GCCGCGGGCTTTAGTACACCTTCCGATCCTGGGCCTACTTCGACTCCAAC
TCACAGCAGTGTCGGCTTTCTTTCGTCCCGACCAAGCTGTCAGATTTCCT
CAAAAGTGGCTATCGCGCTTAGAATTTAATACAAACAACGCGACACCGAC
GCATGCCGACTTGTACTTACTCACACTACGTACTCGCACGTGGTTTCAGC
GAGTTTTCTTGCCACAGCCCCAAGATCTCAAGAACCTACAACTGAATCCC
AGACTGCCAACAGGTAGCAGCTCTTCCGTGTGCATCGTGTAAAATATGGC
AGCCTGAACCGTCCTACTCACAGATACGAGACAATTTTTTGGAAGATCAT
CTCGTCCGACACGCCAACCACTTTTGTAACGGTCCAGTGGAACCTATTCA
GGCTTGGGTGCACGCTAACAGCGTCGTCAGTCGTCCACCTCTCTCCGTCG
GCTAGCTTCCTCCGCGACCTCAGGACCAACGGAAGTTCCGCTTCGTCGTG
CTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7096:1288..1840+

>mRNA_M-pyrifera_M_contig7096.16937.1 ID=mRNA_M-pyrifera_M_contig7096.16937.1|Name=mRNA_M-pyrifera_M_contig7096.16937.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig7096:1288..1840+ (Macrocystis pyrifera P11B4 male)
CCACATTATTACTTTCACACACTTTCGGCGCAGTTGACTTTCTCACGTCG
GCCGCGGGCTTTAGTACACCTTCCGATCCTGGGCCTACTTCGACTCCAAC
TCACAGCAGTGTCGGCTTTCTTTCGTCCCGACCAAGCTGTCAGATTTCCT
CAAAAGTGGCTATCGCGCTTAGAATTTAATACAAACAACGCGACACCGAC
GCATGCCGACTTGTACTTACTCACACTACGTACTCGCACGTGGTTTCAGC
GAGTTTTCTTGCCACAGCCCCAAGATCTCAAGAACCTACAACTGAATCCC
AGACTGCCAACAGGTAGCAGCTCTTCCGTGTGCATCGTGTAACCACATTA
TTACTTTCACACACTTTCGGCGCAGTTGACTTTCTCACGTCGGCCGCGGG
CTTTAGTACACCTTCCGATCCTGGGCCTACTTCGACTCCAACTCACAGCA
GTGTCGGCTTTCTTTCGTCCCGACCAAGCTGTCAGATTTCCTCAAAAGTG
GCTATCGCGCTTAGAATTTAATACAAACAACGCGACACCGACGCATGCCG
ACTTGTACTTACTCACACTACGTACTCGCACGTGGTTTCAGCGAGTTTTC
TTGCCACAGCCCCAAGATCTCAAGAACCTACAACTGAATCCCAGACTGCC
AACAGGTAGCAGCTCTTCCGTGTGCATCGTGTAA
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