mRNA_M-pyrifera_M_contig70959.16936.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70959.16936.1
Unique NamemRNA_M-pyrifera_M_contig70959.16936.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: A0A1W2GH19_9BACT (Two component transcriptional regulator, LytTR family n=1 Tax=Reichenbachiella faecimaris TaxID=692418 RepID=A0A1W2GH19_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 2.070e-12
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1
Query:    1 QICAIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLNK 132
            QICAI +M+ YSKGRL+I+L P  KK+ IVSI+RA  FKNWLNK
Sbjct:  209 QICAIEEMVNYSKGRLQISLNPPTKKDAIVSIERATAFKNWLNK 252          
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: UPI00198D2AF9 (Response regulator transcription factor n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=UPI00198D2AF9)

HSP 1 Score: 57.8 bits (138), Expect = 1.080e-8
Identity = 24/41 (58.54%), Postives = 34/41 (82.93%), Query Frame = 1
Query:   10 AIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLNK 132
            +I++MI+YSK R+KI L+P+  KETIVS++R+  FK WLNK
Sbjct:  210 SIKNMISYSKSRVKIELQPQTDKETIVSVERSSAFKEWLNK 250          
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: UPI0019B09391 (Response regulator transcription factor n=1 Tax=Fimbriimonadaceae bacterium TaxID=2682144 RepID=UPI0019B09391)

HSP 1 Score: 57.0 bits (136), Expect = 2.070e-8
Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1
Query:   10 AIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLNK 132
            +I++M+AYSK R+K+ L P   KETIVS++R+ DFK WLNK
Sbjct:  210 SIKNMLAYSKSRVKLELIPHTDKETIVSVERSGDFKEWLNK 250          
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: UPI00199CC2D2 (Response regulator transcription factor n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI00199CC2D2)

HSP 1 Score: 55.8 bits (133), Expect = 3.260e-8
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1
Query:   10 AIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLNK 132
            AI  M+ +++GR+KI L P  K+E IVSI+RA+DFK WLN+
Sbjct:  152 AISQMVVHTRGRVKIELNPPVKEEVIVSIERALDFKGWLNQ 192          
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: UPI0003777A51 (LytTR family DNA-binding domain-containing protein n=1 Tax=Lewinella cohaerens TaxID=70995 RepID=UPI0003777A51)

HSP 1 Score: 56.2 bits (134), Expect = 3.930e-8
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1
Query:    4 ICAIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLN 129
            + AI +M+ YSKGR+K+TL+P A+++TIVS +R+  FK WLN
Sbjct:  205 LSAIEEMVTYSKGRVKLTLQPAAEQDTIVSTERSPVFKKWLN 246          
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: A0A1M3D243_9BACT (DNA-binding response regulator n=1 Tax=Bacteroidetes bacterium 41-46 TaxID=1895922 RepID=A0A1M3D243_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 4.000e-8
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1
Query:   10 AIRDMIAYSKGRLKITLEPEAKKET--IVSIDRAMDFKNWLNK 132
            +I +M+AYS+GR+KITL+PE + +T  IVSIDR+ DFK WL+K
Sbjct:  209 SIINMVAYSRGRIKITLKPEFENDTEAIVSIDRSSDFKRWLDK 251          
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: UPI000D07F835 (LytTR family DNA-binding domain-containing protein n=1 Tax=Marinilabilia salmonicolor TaxID=989 RepID=UPI000D07F835)

HSP 1 Score: 53.5 bits (127), Expect = 3.890e-7
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   10 AIRDMIAYSKGRLKITLEPE--AKKETIVSIDRAMDFKNWLNK 132
            AI +M AYS+GR+K+ L P   A  ETIVS+DR++ FK WLNK
Sbjct:  209 AISNMTAYSRGRVKLELTPSPVADSETIVSVDRSLSFKKWLNK 251          
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: A0A6I0E2I0_9BACT (Response regulator transcription factor n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A6I0E2I0_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 3.950e-7
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    4 ICAIRDMIAYSKGRLKITLEPEAKKE--TIVSIDRAMDFKNWLN 129
            I +I +M+AYS+GR+K+ L+P+A  E  TIVSIDR+ +FK WLN
Sbjct:  210 IASISNMVAYSRGRVKLELKPKADDEFETIVSIDRSGEFKKWLN 253          
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: A0A7J5W6R5_9BACT (Uncharacterized protein n=2 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A7J5W6R5_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 3.990e-7
Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   10 AIRDMIAYSKGRLKITLEPEAKKE--TIVSIDRAMDFKNWLN 129
            +I +M+AYS+GR+K+ L+P+A +E   IVS+DR+ DFK WLN
Sbjct:  166 SIANMVAYSRGRIKLELKPKADEEFEAIVSVDRSSDFKKWLN 207          
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: A0A1Q3WQY9_9BACT (DNA-binding response regulator n=1 Tax=Bacteroidetes bacterium 46-16 TaxID=1895925 RepID=A0A1Q3WQY9_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 5.270e-7
Identity = 22/41 (53.66%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    4 ICAIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWL 126
            + +I+DM  YSK R+ ITL+P+AK++ +VS +RA DFK+WL
Sbjct:  204 LASIQDMKTYSKARVIITLQPQAKEQPVVSSERAADFKHWL 244          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W2GH19_9BACT2.070e-1268.18Two component transcriptional regulator, LytTR fam... [more]
UPI00198D2AF91.080e-858.54Response regulator transcription factor n=1 Tax=Ch... [more]
UPI0019B093912.070e-858.54Response regulator transcription factor n=1 Tax=Fi... [more]
UPI00199CC2D23.260e-856.10Response regulator transcription factor n=1 Tax=Ve... [more]
UPI0003777A513.930e-854.76LytTR family DNA-binding domain-containing protein... [more]
A0A1M3D243_9BACT4.000e-860.47DNA-binding response regulator n=1 Tax=Bacteroidet... [more]
UPI000D07F8353.890e-758.14LytTR family DNA-binding domain-containing protein... [more]
A0A6I0E2I0_9BACT3.950e-756.82Response regulator transcription factor n=2 Tax=Ba... [more]
A0A7J5W6R5_9BACT3.990e-754.76Uncharacterized protein n=2 Tax=unclassified Bacte... [more]
A0A1Q3WQY9_9BACT5.270e-753.66DNA-binding response regulator n=1 Tax=Bacteroidet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70959contigM-pyrifera_M_contig70959:1030..1164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size114
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.965576-CDS-M-pyrifera_M_contig70959:1029..11431622816603.965576-CDS-M-pyrifera_M_contig70959:1029..1143Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70959 1030..1143 -
1692278072.2192554-CDS-M-pyrifera_M_contig70959:1029..11431692278072.2192554-CDS-M-pyrifera_M_contig70959:1029..1143Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70959 1030..1143 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.9784741-UTR-M-pyrifera_M_contig70959:1143..11641622816603.9784741-UTR-M-pyrifera_M_contig70959:1143..1164Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70959 1144..1164 -
1692278072.227948-UTR-M-pyrifera_M_contig70959:1143..11641692278072.227948-UTR-M-pyrifera_M_contig70959:1143..1164Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70959 1144..1164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70959.16936.1prot_M-pyrifera_M_contig70959.16936.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70959 1030..1143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70959.16936.1

>prot_M-pyrifera_M_contig70959.16936.1 ID=prot_M-pyrifera_M_contig70959.16936.1|Name=mRNA_M-pyrifera_M_contig70959.16936.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
MIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLNK*
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mRNA from alignment at M-pyrifera_M_contig70959:1030..1164-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70959.16936.1 ID=mRNA_M-pyrifera_M_contig70959.16936.1|Name=mRNA_M-pyrifera_M_contig70959.16936.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig70959:1030..1164- (Macrocystis pyrifera P11B4 male)
CAAATATGTGCTATTCGAGACATGATTGCATATAGCAAAGGACGATTGAA GATAACACTTGAACCCGAGGCCAAAAAAGAAACCATTGTTAGTATTGATC GAGCCATGGATTTCAAAAATTGGCTAAATAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70959:1030..1164-

>mRNA_M-pyrifera_M_contig70959.16936.1 ID=mRNA_M-pyrifera_M_contig70959.16936.1|Name=mRNA_M-pyrifera_M_contig70959.16936.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig70959:1030..1164- (Macrocystis pyrifera P11B4 male)
ATGATTGCATATAGCAAAGGACGATTGAAGATAACACTTGAACCCGAGGC
CAAAAAAGAAACCATTGTTAGTATTGATCGAGCCATGGATTTCAAAAATT
GGCTAAATAAATAAATGATTGCATATAGCAAAGGACGATTGAAGATAACA
CTTGAACCCGAGGCCAAAAAAGAAACCATTGTTAGTATTGATCGAGCCAT
GGATTTCAAAAATTGGCTAAATAAATAA
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