mRNA_M-pyrifera_M_contig70959.16936.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: A0A1W2GH19_9BACT (Two component transcriptional regulator, LytTR family n=1 Tax=Reichenbachiella faecimaris TaxID=692418 RepID=A0A1W2GH19_9BACT) HSP 1 Score: 67.8 bits (164), Expect = 2.070e-12 Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1
Query: 1 QICAIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLNK 132
QICAI +M+ YSKGRL+I+L P KK+ IVSI+RA FKNWLNK
Sbjct: 209 QICAIEEMVNYSKGRLQISLNPPTKKDAIVSIERATAFKNWLNK 252
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: UPI00198D2AF9 (Response regulator transcription factor n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=UPI00198D2AF9) HSP 1 Score: 57.8 bits (138), Expect = 1.080e-8 Identity = 24/41 (58.54%), Postives = 34/41 (82.93%), Query Frame = 1
Query: 10 AIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLNK 132
+I++MI+YSK R+KI L+P+ KETIVS++R+ FK WLNK
Sbjct: 210 SIKNMISYSKSRVKIELQPQTDKETIVSVERSSAFKEWLNK 250
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: UPI0019B09391 (Response regulator transcription factor n=1 Tax=Fimbriimonadaceae bacterium TaxID=2682144 RepID=UPI0019B09391) HSP 1 Score: 57.0 bits (136), Expect = 2.070e-8 Identity = 24/41 (58.54%), Postives = 33/41 (80.49%), Query Frame = 1
Query: 10 AIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLNK 132
+I++M+AYSK R+K+ L P KETIVS++R+ DFK WLNK
Sbjct: 210 SIKNMLAYSKSRVKLELIPHTDKETIVSVERSGDFKEWLNK 250
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: UPI00199CC2D2 (Response regulator transcription factor n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI00199CC2D2) HSP 1 Score: 55.8 bits (133), Expect = 3.260e-8 Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1
Query: 10 AIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLNK 132
AI M+ +++GR+KI L P K+E IVSI+RA+DFK WLN+
Sbjct: 152 AISQMVVHTRGRVKIELNPPVKEEVIVSIERALDFKGWLNQ 192
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: UPI0003777A51 (LytTR family DNA-binding domain-containing protein n=1 Tax=Lewinella cohaerens TaxID=70995 RepID=UPI0003777A51) HSP 1 Score: 56.2 bits (134), Expect = 3.930e-8 Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1
Query: 4 ICAIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLN 129
+ AI +M+ YSKGR+K+TL+P A+++TIVS +R+ FK WLN
Sbjct: 205 LSAIEEMVTYSKGRVKLTLQPAAEQDTIVSTERSPVFKKWLN 246
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: A0A1M3D243_9BACT (DNA-binding response regulator n=1 Tax=Bacteroidetes bacterium 41-46 TaxID=1895922 RepID=A0A1M3D243_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 4.000e-8 Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 10 AIRDMIAYSKGRLKITLEPEAKKET--IVSIDRAMDFKNWLNK 132
+I +M+AYS+GR+KITL+PE + +T IVSIDR+ DFK WL+K
Sbjct: 209 SIINMVAYSRGRIKITLKPEFENDTEAIVSIDRSSDFKRWLDK 251
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: UPI000D07F835 (LytTR family DNA-binding domain-containing protein n=1 Tax=Marinilabilia salmonicolor TaxID=989 RepID=UPI000D07F835) HSP 1 Score: 53.5 bits (127), Expect = 3.890e-7 Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1
Query: 10 AIRDMIAYSKGRLKITLEPE--AKKETIVSIDRAMDFKNWLNK 132
AI +M AYS+GR+K+ L P A ETIVS+DR++ FK WLNK
Sbjct: 209 AISNMTAYSRGRVKLELTPSPVADSETIVSVDRSLSFKKWLNK 251
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: A0A6I0E2I0_9BACT (Response regulator transcription factor n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A6I0E2I0_9BACT) HSP 1 Score: 53.5 bits (127), Expect = 3.950e-7 Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 4 ICAIRDMIAYSKGRLKITLEPEAKKE--TIVSIDRAMDFKNWLN 129
I +I +M+AYS+GR+K+ L+P+A E TIVSIDR+ +FK WLN
Sbjct: 210 IASISNMVAYSRGRVKLELKPKADDEFETIVSIDRSGEFKKWLN 253
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: A0A7J5W6R5_9BACT (Uncharacterized protein n=2 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A7J5W6R5_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 3.990e-7 Identity = 23/42 (54.76%), Postives = 34/42 (80.95%), Query Frame = 1
Query: 10 AIRDMIAYSKGRLKITLEPEAKKE--TIVSIDRAMDFKNWLN 129
+I +M+AYS+GR+K+ L+P+A +E IVS+DR+ DFK WLN
Sbjct: 166 SIANMVAYSRGRIKLELKPKADEEFEAIVSVDRSSDFKKWLN 207
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Match: A0A1Q3WQY9_9BACT (DNA-binding response regulator n=1 Tax=Bacteroidetes bacterium 46-16 TaxID=1895925 RepID=A0A1Q3WQY9_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 5.270e-7 Identity = 22/41 (53.66%), Postives = 33/41 (80.49%), Query Frame = 1
Query: 4 ICAIRDMIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWL 126
+ +I+DM YSK R+ ITL+P+AK++ +VS +RA DFK+WL
Sbjct: 204 LASIQDMKTYSKARVIITLQPQAKEQPVVSSERAADFKHWL 244 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70959.16936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig70959.16936.1 >prot_M-pyrifera_M_contig70959.16936.1 ID=prot_M-pyrifera_M_contig70959.16936.1|Name=mRNA_M-pyrifera_M_contig70959.16936.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp MIAYSKGRLKITLEPEAKKETIVSIDRAMDFKNWLNK*back to top mRNA from alignment at M-pyrifera_M_contig70959:1030..1164- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig70959.16936.1 ID=mRNA_M-pyrifera_M_contig70959.16936.1|Name=mRNA_M-pyrifera_M_contig70959.16936.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig70959:1030..1164- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig70959:1030..1164- >mRNA_M-pyrifera_M_contig70959.16936.1 ID=mRNA_M-pyrifera_M_contig70959.16936.1|Name=mRNA_M-pyrifera_M_contig70959.16936.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig70959:1030..1164- (Macrocystis pyrifera P11B4 male)back to top |