mRNA_M-pyrifera_M_contig70952.16934.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70952.16934.1
Unique NamemRNA_M-pyrifera_M_contig70952.16934.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A5A8EDF7_CAFRO (40S ribosomal protein S26 n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDF7_CAFRO)

HSP 1 Score: 110 bits (274), Expect = 2.570e-28
Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 1
Query:   37 QDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREERKPEEG 279
            +DKAV RF+++N+VD+GAMNDLRAA A ENY +PKLYAK  +CISCAVH+RIVRVRN +ARR R+PP RFRRR E + +EG
Sbjct:   65 KDKAVHRFNIRNIVDSGAMNDLRAACAIENYVVPKLYAKSYYCISCAVHSRIVRVRNREARRNRDPPVRFRRRPEGERKEG 145          
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A2I0WU26_9ASPA (40S ribosomal protein S26 n=5 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WU26_9ASPA)

HSP 1 Score: 105 bits (261), Expect = 8.730e-27
Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = 1
Query:   28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREER-KPEEGG 282
            CC +DKA+KRF V+N+V+  A+ D++ A  YENY +PKLYAK  +C+SCA+H+ +VRVR+  ARR+REPPQRFRRRE+  +P +GG
Sbjct:   46 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYENYTLPKLYAKVQYCVSCAIHSHVVRVRSRTARRVREPPQRFRRREDLGRPGQGG 131          
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: UPI0009E1990E (40S ribosomal protein S26-1-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E1990E)

HSP 1 Score: 102 bits (255), Expect = 3.150e-26
Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = 1
Query:   28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRR 255
            CC +DKA+KRF V+N+V+  A+ D++ A  YENY +PKLYAK  +C+SCA+H+ +VRVR+  ARR+REPPQRFRRR
Sbjct:   29 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYENYTLPKLYAKVQYCVSCAIHSHVVRVRSRTARRVREPPQRFRRR 104          
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A5A8CF71_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CF71_CAFRO)

HSP 1 Score: 110 bits (274), Expect = 5.730e-26
Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 1
Query:   37 QDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREERKPEEG 279
            +DKAV RF+++N+VD+GAMNDLRAA A ENY +PKLYAK  +CISCAVH+RIVRVRN +ARR R+PP RFRRR E + +EG
Sbjct:  467 KDKAVHRFNIRNIVDSGAMNDLRAACAIENYVVPKLYAKSYYCISCAVHSRIVRVRNREARRNRDPPVRFRRRPEGERKEG 547          
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A835V8C6_VANPL (40S ribosomal protein S26 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V8C6_VANPL)

HSP 1 Score: 102 bits (253), Expect = 7.710e-26
Identity = 47/78 (60.26%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREE 261
            CC +DKA+KRF V+N+V+  A+ D++ A  YE+Y +PKLYAK  +CISCA+H+ +VRVR+  ARRIREPPQRFRRR++
Sbjct:   29 CCPKDKAIKRFLVRNIVEQAAVRDVQDACVYESYALPKLYAKVQYCISCAIHSHVVRVRSRTARRIREPPQRFRRRDD 106          
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A7C9DUP4_OPUST (40S ribosomal protein S26 n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DUP4_OPUST)

HSP 1 Score: 102 bits (253), Expect = 8.630e-26
Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREE 261
            CC +DKA+KRF V+N+V+  A+ D++ A  Y+ Y +PKLY K  +C+SCA+HA +VRVR+ +ARRIREPPQRFRRRE+
Sbjct:   29 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYVLPKLYTKMQYCVSCAIHAHVVRVRSREARRIREPPQRFRRRED 106          
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A4Y7JIJ6_PAPSO (40S ribosomal protein S26 n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JIJ6_PAPSO)

HSP 1 Score: 101 bits (252), Expect = 1.620e-25
Identity = 50/95 (52.63%), Postives = 72/95 (75.79%), Query Frame = 1
Query:   28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREE-RKPEEGGARXXXRGAA 309
            CC +DKA+KRF V+N+V+  A+ D++ A  Y+ Y +PKLYAK  +C+SCA+H+ +VRVR+ + RR R+PPQRFRRR++ +KP +GG R    GAA
Sbjct:   29 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMLYCVSCAIHSHVVRVRSREKRRNRDPPQRFRRRDDTQKPAQGGPRAAGAGAA 123          
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A163JXT6_ABSGL (40S ribosomal protein S26 n=6 Tax=Absidia TaxID=4828 RepID=A0A163JXT6_ABSGL)

HSP 1 Score: 99.8 bits (247), Expect = 4.230e-25
Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query:   10 LRCFRYCCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFR 249
            + C+R CC +DKA+KRF+++NMV+  A+ DL+ AS YE Y IPKLY K  +CISCA+HAR+VRVR+  +RR R PP RFR
Sbjct:   24 INCYR-CCPKDKAIKRFTIRNMVEAAAVRDLQEASIYEEYAIPKLYVKLHYCISCAIHARVVRVRSVVSRRNRAPPPRFR 102          
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A7I8K7C4_SPIIN (40S ribosomal protein S26 n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K7C4_SPIIN)

HSP 1 Score: 100 bits (248), Expect = 4.810e-25
Identity = 48/81 (59.26%), Postives = 64/81 (79.01%), Query Frame = 1
Query:   28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREERKP 270
            CC +DKAVKRF V+N+V+  A+ D++ A  YE+Y +PKLYAK  +CISCA+H+ +VRVR+   RR REPPQRFRRR++ KP
Sbjct:   29 CCPKDKAVKRFLVRNIVEQAAVRDVQEACVYESYTLPKLYAKMHYCISCAIHSHVVRVRSRTNRRNREPPQRFRRRDDTKP 109          
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A7J6GWW0_CANSA (40S ribosomal protein S26 n=5 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6GWW0_CANSA)

HSP 1 Score: 100 bits (248), Expect = 5.380e-25
Identity = 44/78 (56.41%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREE 261
            CC +DKA+KRF V+N+V+  A+ D++ A  Y+ Y +PKLYAK  +C+SCA+H+ +VRVR+ + RR+REPPQRFRRRE+
Sbjct:   29 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSHVVRVRSRENRRVREPPQRFRRRED 106          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EDF7_CAFRO2.570e-2869.1440S ribosomal protein S26 n=2 Tax=Cafeteria roenbe... [more]
A0A2I0WU26_9ASPA8.730e-2758.1440S ribosomal protein S26 n=5 Tax=Epidendroideae T... [more]
UPI0009E1990E3.150e-2660.5340S ribosomal protein S26-1-like n=1 Tax=Phalaenop... [more]
A0A5A8CF71_CAFRO5.730e-2669.14Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A835V8C6_VANPL7.710e-2660.2640S ribosomal protein S26 n=1 Tax=Vanilla planifol... [more]
A0A7C9DUP4_OPUST8.630e-2658.9740S ribosomal protein S26 n=1 Tax=Opuntia streptac... [more]
A0A4Y7JIJ6_PAPSO1.620e-2552.6340S ribosomal protein S26 n=3 Tax=Papaver somnifer... [more]
A0A163JXT6_ABSGL4.230e-2558.7540S ribosomal protein S26 n=6 Tax=Absidia TaxID=48... [more]
A0A7I8K7C4_SPIIN4.810e-2559.2640S ribosomal protein S26 n=1 Tax=Spirodela interm... [more]
A0A7J6GWW0_CANSA5.380e-2556.4140S ribosomal protein S26 n=5 Tax=Cannabis sativa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70952contigM-pyrifera_M_contig70952:286..594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score102.8
Seed ortholog evalue9.6e-20
Seed eggNOG ortholog3218.PP1S270_77V6.1
Preferred nameRPS26
KEGG koko:K02976
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the eukaryotic ribosomal protein eS26 family
EggNOG OGs37UMY@33090,3GIQF@35493,COG4830@1,KOG1768@2759
COG Functional cat.J
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.8847072-CDS-M-pyrifera_M_contig70952:285..5941622816603.8847072-CDS-M-pyrifera_M_contig70952:285..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70952 286..594 +
1692278072.1884453-CDS-M-pyrifera_M_contig70952:285..5941692278072.1884453-CDS-M-pyrifera_M_contig70952:285..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70952 286..594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70952.16934.1prot_M-pyrifera_M_contig70952.16934.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70952 286..594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70952.16934.1

>prot_M-pyrifera_M_contig70952.16934.1 ID=prot_M-pyrifera_M_contig70952.16934.1|Name=mRNA_M-pyrifera_M_contig70952.16934.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
VLVLRCFRYCCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYA
KDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREERKPEEGGARGGAR
GAA
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mRNA from alignment at M-pyrifera_M_contig70952:286..594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70952.16934.1 ID=mRNA_M-pyrifera_M_contig70952.16934.1|Name=mRNA_M-pyrifera_M_contig70952.16934.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig70952:286..594+ (Macrocystis pyrifera P11B4 male)
GTGCTTGTTTTGCGATGTTTCCGGTATTGTTGTGTGCAGGACAAGGCCGT GAAGCGGTTCAGCGTGAAGAACATGGTGGACACTGGCGCGATGAACGATT TGCGGGCAGCGTCTGCGTACGAAAACTACCAGATCCCAAAGCTCTACGCC AAGGACAGCTTCTGCATCTCCTGCGCCGTGCACGCCCGCATCGTGCGTGT GCGTAACGCGCAGGCGCGTCGCATCCGTGAACCCCCTCAACGATTCCGTC GCCGCGAAGAGCGAAAGCCAGAGGAGGGCGGGGCTCGTGGAGGCGCCAGA GGGGCTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70952:286..594+

>mRNA_M-pyrifera_M_contig70952.16934.1 ID=mRNA_M-pyrifera_M_contig70952.16934.1|Name=mRNA_M-pyrifera_M_contig70952.16934.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig70952:286..594+ (Macrocystis pyrifera P11B4 male)
GTGCTTGTTTTGCGATGTTTCCGGTATTGTTGTGTGCAGGACAAGGCCGT
GAAGCGGTTCAGCGTGAAGAACATGGTGGACACTGGCGCGATGAACGATT
TGCGGGCAGCGTCTGCGTACGAAAACTACCAGATCCCAAAGCTCTACGCC
AAGGACAGCTTCTGCATCTCCTGCGCCGTGCACGCCCGCATCGTGCGTGT
GCGTAACGCGCAGGCGCGTCGCATCCGTGAACCCCCTCAACGATTCCGTC
GCCGCGAAGAGCGAAAGCCAGAGGAGGGCGGGGCTCGTGGAGGCGCCAGA
GGGGCTGCCGTGCTTGTTTTGCGATGTTTCCGGTATTGTTGTGTGCAGGA
CAAGGCCGTGAAGCGGTTCAGCGTGAAGAACATGGTGGACACTGGCGCGA
TGAACGATTTGCGGGCAGCGTCTGCGTACGAAAACTACCAGATCCCAAAG
CTCTACGCCAAGGACAGCTTCTGCATCTCCTGCGCCGTGCACGCCCGCAT
CGTGCGTGTGCGTAACGCGCAGGCGCGTCGCATCCGTGAACCCCCTCAAC
GATTCCGTCGCCGCGAAGAGCGAAAGCCAGAGGAGGGCGGGGCTCGTGGA
GGCGCCAGAGGGGCTGCC
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