mRNA_M-pyrifera_M_contig70952.16934.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A5A8EDF7_CAFRO (40S ribosomal protein S26 n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDF7_CAFRO) HSP 1 Score: 110 bits (274), Expect = 2.570e-28 Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 1
Query: 37 QDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREERKPEEG 279
+DKAV RF+++N+VD+GAMNDLRAA A ENY +PKLYAK +CISCAVH+RIVRVRN +ARR R+PP RFRRR E + +EG
Sbjct: 65 KDKAVHRFNIRNIVDSGAMNDLRAACAIENYVVPKLYAKSYYCISCAVHSRIVRVRNREARRNRDPPVRFRRRPEGERKEG 145
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A2I0WU26_9ASPA (40S ribosomal protein S26 n=5 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0WU26_9ASPA) HSP 1 Score: 105 bits (261), Expect = 8.730e-27 Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = 1
Query: 28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREER-KPEEGG 282
CC +DKA+KRF V+N+V+ A+ D++ A YENY +PKLYAK +C+SCA+H+ +VRVR+ ARR+REPPQRFRRRE+ +P +GG
Sbjct: 46 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYENYTLPKLYAKVQYCVSCAIHSHVVRVRSRTARRVREPPQRFRRREDLGRPGQGG 131
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: UPI0009E1990E (40S ribosomal protein S26-1-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E1990E) HSP 1 Score: 102 bits (255), Expect = 3.150e-26 Identity = 46/76 (60.53%), Postives = 62/76 (81.58%), Query Frame = 1
Query: 28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRR 255
CC +DKA+KRF V+N+V+ A+ D++ A YENY +PKLYAK +C+SCA+H+ +VRVR+ ARR+REPPQRFRRR
Sbjct: 29 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYENYTLPKLYAKVQYCVSCAIHSHVVRVRSRTARRVREPPQRFRRR 104
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A5A8CF71_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CF71_CAFRO) HSP 1 Score: 110 bits (274), Expect = 5.730e-26 Identity = 56/81 (69.14%), Postives = 69/81 (85.19%), Query Frame = 1
Query: 37 QDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREERKPEEG 279
+DKAV RF+++N+VD+GAMNDLRAA A ENY +PKLYAK +CISCAVH+RIVRVRN +ARR R+PP RFRRR E + +EG
Sbjct: 467 KDKAVHRFNIRNIVDSGAMNDLRAACAIENYVVPKLYAKSYYCISCAVHSRIVRVRNREARRNRDPPVRFRRRPEGERKEG 547
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A835V8C6_VANPL (40S ribosomal protein S26 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V8C6_VANPL) HSP 1 Score: 102 bits (253), Expect = 7.710e-26 Identity = 47/78 (60.26%), Postives = 64/78 (82.05%), Query Frame = 1
Query: 28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREE 261
CC +DKA+KRF V+N+V+ A+ D++ A YE+Y +PKLYAK +CISCA+H+ +VRVR+ ARRIREPPQRFRRR++
Sbjct: 29 CCPKDKAIKRFLVRNIVEQAAVRDVQDACVYESYALPKLYAKVQYCISCAIHSHVVRVRSRTARRIREPPQRFRRRDD 106
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A7C9DUP4_OPUST (40S ribosomal protein S26 n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DUP4_OPUST) HSP 1 Score: 102 bits (253), Expect = 8.630e-26 Identity = 46/78 (58.97%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREE 261
CC +DKA+KRF V+N+V+ A+ D++ A Y+ Y +PKLY K +C+SCA+HA +VRVR+ +ARRIREPPQRFRRRE+
Sbjct: 29 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYVLPKLYTKMQYCVSCAIHAHVVRVRSREARRIREPPQRFRRRED 106
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A4Y7JIJ6_PAPSO (40S ribosomal protein S26 n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JIJ6_PAPSO) HSP 1 Score: 101 bits (252), Expect = 1.620e-25 Identity = 50/95 (52.63%), Postives = 72/95 (75.79%), Query Frame = 1
Query: 28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREE-RKPEEGGARXXXRGAA 309
CC +DKA+KRF V+N+V+ A+ D++ A Y+ Y +PKLYAK +C+SCA+H+ +VRVR+ + RR R+PPQRFRRR++ +KP +GG R GAA
Sbjct: 29 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMLYCVSCAIHSHVVRVRSREKRRNRDPPQRFRRRDDTQKPAQGGPRAAGAGAA 123
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A163JXT6_ABSGL (40S ribosomal protein S26 n=6 Tax=Absidia TaxID=4828 RepID=A0A163JXT6_ABSGL) HSP 1 Score: 99.8 bits (247), Expect = 4.230e-25 Identity = 47/80 (58.75%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 10 LRCFRYCCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFR 249
+ C+R CC +DKA+KRF+++NMV+ A+ DL+ AS YE Y IPKLY K +CISCA+HAR+VRVR+ +RR R PP RFR
Sbjct: 24 INCYR-CCPKDKAIKRFTIRNMVEAAAVRDLQEASIYEEYAIPKLYVKLHYCISCAIHARVVRVRSVVSRRNRAPPPRFR 102
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A7I8K7C4_SPIIN (40S ribosomal protein S26 n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K7C4_SPIIN) HSP 1 Score: 100 bits (248), Expect = 4.810e-25 Identity = 48/81 (59.26%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREERKP 270
CC +DKAVKRF V+N+V+ A+ D++ A YE+Y +PKLYAK +CISCA+H+ +VRVR+ RR REPPQRFRRR++ KP
Sbjct: 29 CCPKDKAVKRFLVRNIVEQAAVRDVQEACVYESYTLPKLYAKMHYCISCAIHSHVVRVRSRTNRRNREPPQRFRRRDDTKP 109
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Match: A0A7J6GWW0_CANSA (40S ribosomal protein S26 n=5 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6GWW0_CANSA) HSP 1 Score: 100 bits (248), Expect = 5.380e-25 Identity = 44/78 (56.41%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 28 CCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAKDSFCISCAVHARIVRVRNAQARRIREPPQRFRRREE 261
CC +DKA+KRF V+N+V+ A+ D++ A Y+ Y +PKLYAK +C+SCA+H+ +VRVR+ + RR+REPPQRFRRRE+
Sbjct: 29 CCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHSHVVRVRSRENRRVREPPQRFRRRED 106 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70952.16934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig70952.16934.1 >prot_M-pyrifera_M_contig70952.16934.1 ID=prot_M-pyrifera_M_contig70952.16934.1|Name=mRNA_M-pyrifera_M_contig70952.16934.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp VLVLRCFRYCCVQDKAVKRFSVKNMVDTGAMNDLRAASAYENYQIPKLYAback to top mRNA from alignment at M-pyrifera_M_contig70952:286..594+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig70952.16934.1 ID=mRNA_M-pyrifera_M_contig70952.16934.1|Name=mRNA_M-pyrifera_M_contig70952.16934.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig70952:286..594+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig70952:286..594+ >mRNA_M-pyrifera_M_contig70952.16934.1 ID=mRNA_M-pyrifera_M_contig70952.16934.1|Name=mRNA_M-pyrifera_M_contig70952.16934.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig70952:286..594+ (Macrocystis pyrifera P11B4 male)back to top |