mRNA_M-pyrifera_M_contig7092.16930.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI) HSP 1 Score: 292 bits (748), Expect = 4.840e-79 Identity = 361/696 (51.87%), Postives = 404/696 (58.05%), Query Frame = 1
Query: 847 REPLSRREGLRNMGNTCYVNACLQGLLSLRGFITDIQSKCWVLAMLTSENSAG----DGVRGASNAGAGAGAASAGIFCRPAGRCRRGRAVSIADDHHSSLCLTKSKAPMGPGLYDALLRLSLEARGSHGLMDATPLKKAMDRQSHRFAGNMQQDAHEFLGDLINVLHEEARPRLEDAAAYLRKTEGKKTLETPPLLASGE-GAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDGAMVDLSS-----DGREK----GEGVGEAATATIVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKRLSGGEENAVLHAKPMNSSLFSLFPSSXXXXXCPRPPIARGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVVAMERLMPTTRHFHAEVEVTLTCTRCSYRRRRREPYRDFSLHIPEXXXXXXXXXXXEENEDGGE--------EGRVSGLGALLDGFFAPAELNLRCERCGHGLVRAEHSLAQLPGALVLHIKRFKPVASSLVPATPAVSLTPSLTPSPAAATSSGGGXXXXXXXXXXXXXXXXXXXDG-EICEDITTPSDEG--------WPRDGKNTNKLGQSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWGVSYVKLTAPVSIPLELDLSRFCSRYTGNPPVDELGQ 2841
REPLSRREG RNMGNTCY+NACLQGLLSL GF+ D++ KCWVLAML A DG R AG G G I R + RAV++ DD P+ P LY+ALLRLSLEARGSHGLMDA+PLK+AMDR S RFAGN+QQDAHEFLGDL+NVLHEE +PRL+ AA Y+ GK + G+ G V XXXXXXXX XXXXXXXXXXXXXXXX MVDLSS +GRE+ G G + +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V S S XXXX XXXXXXXXX + ERLMPTTRHFHAEVE TLTCT+CSY RRRRE YRDFSL +PE XXXXXXX +G VSGLG LLD FF P+EL+LRCERCGH VRAEHSLA+LPGALVLH+KRFKP AS+ + A + G XXXXXXXXXXXX G + +P D+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + GVSYVKL++PVS+PLELDL RFCS YTGN P ++LG+
Sbjct: 250 REPLSRREGFRNMGNTCYLNACLQGLLSLSGFVGDLRRKCWVLAMLKPPPPAATGGVDGDR-VDVAGGGDGGGDDAIDIRDS---PHPRAVAVNDDXXXXXXXXXXX-PLPPILYEALLRLSLEARGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLGDLVNVLHEETQPRLDIAAGYV----GKPLAAAAAVSGGGDKGKKVEVAVGAERSGRTRKTXXXXXXXXDGGFGSXXXXXXXXXXXXXXXXV--------TMVDLSSTDSGDEGREEPDVYGGGWDDGEDFAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFEVFDLDSDGSC------SDDXXXXXXXXXXXXXXXXXXXXXXXXARGETRTEGGDEDGEGPEGGREDEEALRQKERLMPTTRHFHAEVEATLTCTKCSYSRRRRELYRDFSLDVPEPARRXXXXXXXXXXXXXXXXXXXXXXXDGGVSGLGDLLDSFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHVKRFKPAASAXXXXXXXXXXXXXXXXASEATSPVAGSXXXXXXXXXXXXGRSSIAPAGASATAGVPSPEDDAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGGVSYVKLSSPVSVPLELDLERFCSGYTGNAPAEDLGK 922
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE) HSP 1 Score: 287 bits (734), Expect = 1.080e-77 Identity = 372/711 (52.32%), Postives = 408/711 (57.38%), Query Frame = 1
Query: 847 REPLSRREGLRNMGNTCYVNACLQGLLSLRGFITDIQSKCWVLAMLTSENSAG----DGVRGASNAGAGAGAASAGIFCRPAGRCRRGRAVSIADDHHSSLCLTKSKAPMGPGLYDALLRLSLEARGSHGLMDATPLKKAMDRQSHRFAGNMQQDAHEFLGDLINVLHEEARPRLEDAAAYLRKTEGKKTLETPPLLASGEGAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDG----AMVDLSS-----DGREKGEGVGE---------AATATIVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKRLSGGEENAVLHAKPMNSSLFSLFPSSXXXXXCPRPPIARGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVVAMERLMPTTRHFHAEVEVTLTCTRCSYRRRRREPYRDFSLHIPEXXXXXXXXXXXEENEDGGE------EGRVSGLGALLDGFFAPAELNLRCERCGHGLVRAEHSLAQLPGALVLHIKRFKPVASSLVPATPAVSLTPSLTPSPAAATSSGGGXXXXXXXXXXXXXXXXXXXDGEICEDITTPSDE------GWPRDGKNTNKLGQSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASW------------GVSYVKLTAPVSIPLELDLSRFCSRYTGNPPVDELGQ 2841
REPLSRREG RNMGNTCY+NACLQGLLSL F+ D++ KCWVLAML A DG R AG G G I R + RR AV+ D + LY+ALLRLSLEARGSHGLMDA+PLK+AMDR S RFAGN+QQDAHEFLGDL+N LHEE +PRL+ AA Y+ K PL A+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MVDLSS +GRE+ + G AA XXXXXXXXXXXXXXXXXXXXX S S N A + XXXXX G E XXXX ERLMPTTRHFHAEVE TLTCT+CSY RRRRE YRDFSL +PE XXXXXXX +G VS LG LLD FF P+EL+LRCERCGH VRAEHSLA+LPGALVLHIKRFKPVAS+ P P P SS XXXX + T P+ P D ++G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVSYVKL +PVS+PLELDL RFCS YTGN P ++LG+
Sbjct: 355 REPLSRREGFRNMGNTCYLNACLQGLLSLSDFVGDLRRKCWVLAMLKPPPPAATGGIDGDR-VDVAGDGNGGGDHAIDIRDSPH-RRAVAVNGDDXXXXXXXXXXXXXXI---LYEALLRLSLEARGSHGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLGDLVNALHEETQPRLDIAAGYVGK----------PLAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMVDLSSTDSGDEGREEPDVYGSGWDDGEDFAAAAEXXXXXXXXXXXXXXXXXXXXXXXXXGGVVEVLDLDSDGSYSDDYRNGATAAASSPPTXXXXXXXXXXXXXXXXXXXEGGDEDGEXXXXGREDEEALRQK---------------------ERLMPTTRHFHAEVEATLTCTKCSYSRRRRELYRDFSLDVPEPARRXXXXXXXXXXXXXXXXXXXXXDGGVSELGDLLDNFFQPSELSLRCERCGHDRVRAEHSLAELPGALVLHIKRFKPVASAPPPQLPP--------PKAKVVDSSSEAKLPVAGSAESPLSLPXXXXXXXVGRPSTAPAGAFAIAGVASPEDDAGCATAVEAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGGVSYVKLASPVSVPLELDLERFCSGYTGNAPAEDLGK 1021
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.430e-18 Identity = 70/189 (37.04%), Postives = 85/189 (44.97%), Query Frame = 1
Query: 829 AMEVVGREPLSRREGLRNMGNTCYVNACLQGLLSLRGFITDIQSKCWVLAMLTSENSAGDGVRGASNAGAGAGAASAGIFCRPAGRCRRGRAVSIADDHHSSLCLTKS----KAPMGPGLYDALLRLSLEARGS-HGLMDATPLKKAMDRQSHRFAGNMQQDAHEFLGDLINVLHEEARPRLEDAAAYL 1380
A V R EG RN+GNTCY+NA LQ LL L+ F+ D+Q+ W A+L E + G+S+ K P LY ALL+L+L A G HG++ LK AMD S RFAGN+QQDAHEF GDLIN L EE P A L
Sbjct: 318 AASAVNAAAAPRSEGFRNLGNTCYLNATLQALLGLKEFVDDLQASVWARAILAREGAPAQCAAGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQPGDAALYRALLQLALVAHGGRHGVLTPHRLKAAMDAHSDRFAGNLQQDAHEFFGDLINALQEEMEPYAPAVAQLL 506
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Match: A0A1V9Y9L8_9STRA (Ubiquitin-specific protease n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9L8_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 6.700e-8 Identity = 49/162 (30.25%), Postives = 74/162 (45.68%), Query Frame = 1
Query: 856 LSRREGLRNMGNTCYVNACLQGLLSLRGFITDIQSKCWVLAMLTSENSAGDGVRGASNAGAGAGAASAGIFCRPAGRCRRGRAVSIADDHHSSLCLTKSKAPMGPGLYDALLRLSLEARGSHGLMDATPLKKAMDRQSHRFAGNMQQDAHEFLGDLINVLHE 1341
L++ +GL N+GNTCY+NA LQ LLSL+GF+ ++ WV A++T P + G+ S+ D + LC + ++ G +D P+K + +++ FA N QQDAHEFL +NVLHE
Sbjct: 394 LAKSQGLVNLGNTCYMNAVLQALLSLQGFVQVLRDDAWV-AIVTKH---------------------------PLPKGHWGQ-KSVKDAYELYLCFKEM----------------IKGHGESSHLDPGPMKAVVGKRAQAFANNAQQDAHEFL---MNVLHE 507
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Match: L8HG84_ACACA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HG84_ACACA) HSP 1 Score: 67.4 bits (163), Expect = 8.760e-8 Identity = 53/201 (26.37%), Postives = 83/201 (41.29%), Query Frame = 1
Query: 838 VVGREPLSRREGLRNMGNTCYVNACLQGLLSLRGFITDIQSKCWVLAMLTSENSAGDGVRGASNAGAGAGAASAGIFCRPAGRCRRGRAVSIADDHHSSLCLTKSKAPMGPGLYDALLRLSLEARGS-HGLMDATPLKKAMDRQSHRFAGNMQQDAHEFLGDLINVLHEEARPRLEDAAAYLRKTEGKKTLETPPLLASGE 1437
V+ P +REGL+N+GNTCY+NA LQ LLSL F++D+ D+ +L T Y ALL++++E R HG+++ P+K A+ R + +F+ MQQDAHEFL ++ L E +D+ + G + ++ S E
Sbjct: 81 VLSSRPAFKREGLQNLGNTCYMNAVLQSLLSLETFVSDMNR----------------------------------------------------DEFIQALPYTS--------FYQALLQIAVEMRREKHGIINPWPVKDAVARMAKQFSDWMQQDAHEFLVSCLDQLEGEIDKIGQDSREKAKAEVGASSXXXXXVILSEE 221
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Match: L8HIP5_ACACA (Ubiquitin interaction motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HIP5_ACACA) HSP 1 Score: 67.4 bits (163), Expect = 1.170e-7 Identity = 53/201 (26.37%), Postives = 83/201 (41.29%), Query Frame = 1
Query: 838 VVGREPLSRREGLRNMGNTCYVNACLQGLLSLRGFITDIQSKCWVLAMLTSENSAGDGVRGASNAGAGAGAASAGIFCRPAGRCRRGRAVSIADDHHSSLCLTKSKAPMGPGLYDALLRLSLEARGS-HGLMDATPLKKAMDRQSHRFAGNMQQDAHEFLGDLINVLHEEARPRLEDAAAYLRKTEGKKTLETPPLLASGE 1437
V+ P +REGL+N+GNTCY+NA LQ LLSL F++D+ D+ +L T Y ALL++++E R HG+++ P+K A+ R + +F+ MQQDAHEFL ++ L E +D+ + G + ++ S E
Sbjct: 81 VLSSRPAFKREGLQNLGNTCYMNAVLQSLLSLETFVSDMNR----------------------------------------------------DEFIQALPYTS--------FYQALLQIAVEMRREKHGIINPWPVKDAVARMAKQFSDWMQQDAHEFLVSCLDQLEGEIDKIGQDSREKAKAEVGASSXXXXXVILSEE 221
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Match: A0A024G0B6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G0B6_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 2.470e-6 Identity = 51/200 (25.50%), Postives = 85/200 (42.50%), Query Frame = 1
Query: 835 EVVGREPLSRREGLRNMGNTCYVNACLQGLLSLRGFITDIQSKCWVLA----MLTSENSAGDGVRGASNAGAGAGAASAGIFCRPAGRCRRGRAVSIADDHHSSLCLTKSKAPMGP--GLYDALLRLSLE-ARGSHGLMDATPLKKAMDRQSHRFAGNMQQDAHEFLGDLINVLHEEARPRLEDAAAYLRKTEGKKTLET 1413
+V+ E +S GL NMGN CY+NA LQ L SL F+ D++ W+++ L + + S F R V HH + ++ + LYDAL + G + +K M ++ FA + QQDAHEFL ++++ L +++ + D A +R ++ L +
Sbjct: 328 QVLDTETISLMHGLLNMGNNCYMNAILQALASLSDFVRDLRQDNWLISAVQTQLATPRQEDVSIETPSE-----------DFIRTF--------VHDTQAHHREITNSRREVVENTKFALYDALDDILCSIVNGEESPISPERIKWVMGQRKFIFANHSQQDAHEFLVNVLDELEKDSEEMVNDMCARIRNEMNERNLSS 508
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Match: A0A067C580_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C580_SAPPC) HSP 1 Score: 62.0 bits (149), Expect = 6.340e-6 Identity = 43/157 (27.39%), Postives = 69/157 (43.95%), Query Frame = 1
Query: 865 REGLRNMGNTCYVNACLQGLLSLRGFITDIQSKCWVLAMLTSENSAGDGVRGASNAGAGAGAASAGIFCRPAGRCRRGRAVSIADDHHSSLCLTKSKAPMGPGLYDALLRLSLEARGSHGLMDATPLKKAMDRQSHRFAGNMQQDAHEFLGDLINVL 1335
++GL N+GNTCY+NA LQ LLSL+ F+T ++ WV A+ P G + +AV A D + + + ++ +D +P+K + +++ FA N QQDAHEFL +++N L
Sbjct: 1026 QQGLVNLGNTCYMNAVLQALLSLQAFVTTLRDDAWVTALTK--------------------------MPLPKGHWQA-KAVKDAYDFY------------------LVFKTMIKGHVQSAHLDPSPMKAVVGKRAQVFANNAQQDAHEFLMNVLNEL 1137
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Match: A0A448ZTF6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZTF6_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 7.310e-6 Identity = 38/121 (31.40%), Postives = 52/121 (42.98%), Query Frame = 1
Query: 2038 ERLMPTTRHFHAEVEVTLTCTRCSYRRRRREPYRDFSLHIPEXXXXXXXXXXXEENEDGGEEGRVSGLGALLDG--------FFAPAELNLRCERCGHGLVRAEHSLAQLPGALVLHIKRF 2376
E P T +F +V V LTC C +RR E Y SL I + D ++ + G G L G FFAP + ++CE+C H + QLP L+ H+KRF
Sbjct: 645 EAFSPVTSNFTTKVRVCLTCESCKFRRSHIETYLHLSLEI---------------SNDSSDDDGIGGFGPLSTGSIDDGLRKFFAPEKREIKCEKCFHTSAIQTTEITQLPRNLLFHLKRF 750
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Match: A0A7S1FU46_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FU46_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.100e-5 Identity = 52/164 (31.71%), Postives = 62/164 (37.80%), Query Frame = 1
Query: 865 REGLRNMGNTCYVNACLQGLLSLRGFITDIQSKCWVLAMLTSENSAGDGVRGASNAGAGAGAASAGIFCRPAGRCRRGRAVSIADDHHSSLCLTKSKAPMGP-GLYDALLRLSLEARGSH-GLMDATP--LKKAMDRQSHRFAGNMQQDAHEFLGDLINVLHEE 1344
R GLRN+GNTCYVNA LQ LSL F+ D+ L L P P LY AL L+ R G + P +K+AMDR FAG+ QQDAHEF L++ LHEE
Sbjct: 27 RRGLRNLGNTCYVNASLQLFLSLPAFVADL------------------------------------------------------------LSLQPRPDPSSPRSLYHALASLARSHRAEEAGDCNLAPEEVKEAMDRVVVGFAGSRQQDAHEFTASLLDALHEE 130 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7092.16930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7092.16930.1 >prot_M-pyrifera_M_contig7092.16930.1 ID=prot_M-pyrifera_M_contig7092.16930.1|Name=mRNA_M-pyrifera_M_contig7092.16930.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=947bp LQLADLQETPRDWRGKVSLVSPKLRVITPSTAESRDLISLVAAAWEGNGGback to top mRNA from alignment at M-pyrifera_M_contig7092:1368..10251- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7092.16930.1 ID=mRNA_M-pyrifera_M_contig7092.16930.1|Name=mRNA_M-pyrifera_M_contig7092.16930.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8884bp|location=Sequence derived from alignment at M-pyrifera_M_contig7092:1368..10251- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7092:1368..10251- >mRNA_M-pyrifera_M_contig7092.16930.1 ID=mRNA_M-pyrifera_M_contig7092.16930.1|Name=mRNA_M-pyrifera_M_contig7092.16930.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=5682bp|location=Sequence derived from alignment at M-pyrifera_M_contig7092:1368..10251- (Macrocystis pyrifera P11B4 male)back to top |