mRNA_M-pyrifera_M_contig6884.16548.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6884.16548.1
Unique NamemRNA_M-pyrifera_M_contig6884.16548.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6884.16548.1 vs. uniprot
Match: D8LH17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH17_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.240e-22
Identity = 69/121 (57.02%), Postives = 86/121 (71.07%), Query Frame = 2 
Query:  395 MAVELSATRDKLTKETEKRLRAEAA-----LRQATDRSYVEQLKDANQALQKARQEGQAATXXVQATLREEKTGWAQERLSLTTRLEEALRSTEAFSTRVAELEGATDQLRKESKEAQAEV 742
            +A ELS TRD+L +ETE RL+AE A     L +  D+ Y EQLK A+ ALQ ARQEGQAA   VQ  L +EK  W  E+ SLTTRLEEALRSTE FS RV  LE +T++LR+ES++++AE 
Sbjct:  447 LAAELSMTRDELARETEMRLKAETAVEELQLAEKADKGYEEQLKKADAALQAARQEGQAAVAEVQTLLEKEKQAWGTEKSSLTTRLEEALRSTEDFSARVVALESSTEKLRQESQQSKAEA 567
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6884.16548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH17_ECTSI1.240e-2257.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6884contigM-pyrifera_M_contig6884:8555..12621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010870.1
Exons6
Model size745
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.5713127-CDS-M-pyrifera_M_contig6884:8554..86561622816580.5713127-CDS-M-pyrifera_M_contig6884:8554..8656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6884 8555..8656 -
1692278058.6870244-CDS-M-pyrifera_M_contig6884:8554..86561692278058.6870244-CDS-M-pyrifera_M_contig6884:8554..8656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6884 8555..8656 -
1622816580.5820715-CDS-M-pyrifera_M_contig6884:9212..93661622816580.5820715-CDS-M-pyrifera_M_contig6884:9212..9366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6884 9213..9366 -
1692278058.6984136-CDS-M-pyrifera_M_contig6884:9212..93661692278058.6984136-CDS-M-pyrifera_M_contig6884:9212..9366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6884 9213..9366 -
1622816580.5951393-CDS-M-pyrifera_M_contig6884:10500..105951622816580.5951393-CDS-M-pyrifera_M_contig6884:10500..10595Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6884 10501..10595 -
1692278058.708758-CDS-M-pyrifera_M_contig6884:10500..105951692278058.708758-CDS-M-pyrifera_M_contig6884:10500..10595Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6884 10501..10595 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.6059027-UTR-M-pyrifera_M_contig6884:10595..106101622816580.6059027-UTR-M-pyrifera_M_contig6884:10595..10610Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6884 10596..10610 -
1692278058.722877-UTR-M-pyrifera_M_contig6884:10595..106101692278058.722877-UTR-M-pyrifera_M_contig6884:10595..10610Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6884 10596..10610 -
1622816580.6189907-UTR-M-pyrifera_M_contig6884:11140..112761622816580.6189907-UTR-M-pyrifera_M_contig6884:11140..11276Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6884 11141..11276 -
1692278058.731901-UTR-M-pyrifera_M_contig6884:11140..112761692278058.731901-UTR-M-pyrifera_M_contig6884:11140..11276Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6884 11141..11276 -
1622816580.6309462-UTR-M-pyrifera_M_contig6884:11923..120491622816580.6309462-UTR-M-pyrifera_M_contig6884:11923..12049Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6884 11924..12049 -
1692278058.7410114-UTR-M-pyrifera_M_contig6884:11923..120491692278058.7410114-UTR-M-pyrifera_M_contig6884:11923..12049Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6884 11924..12049 -
1622816580.645435-UTR-M-pyrifera_M_contig6884:12504..126211622816580.645435-UTR-M-pyrifera_M_contig6884:12504..12621Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6884 12505..12621 -
1692278058.7578037-UTR-M-pyrifera_M_contig6884:12504..126211692278058.7578037-UTR-M-pyrifera_M_contig6884:12504..12621Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig6884 12505..12621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6884.16548.1prot_M-pyrifera_M_contig6884.16548.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6884 8555..10595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6884.16548.1

>prot_M-pyrifera_M_contig6884.16548.1 ID=prot_M-pyrifera_M_contig6884.16548.1|Name=mRNA_M-pyrifera_M_contig6884.16548.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MAVELSATRDKLTKETEKRLRAEAALRQATDRSYVEQLKDANQALQKARQ
EGQAATEEVQATLREEKTGWAQERLSLTTRLEEALRSTEAFSTRVAELEG
ATDQLRKESKEAQAEV*
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mRNA from alignment at M-pyrifera_M_contig6884:8555..12621-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6884.16548.1 ID=mRNA_M-pyrifera_M_contig6884.16548.1|Name=mRNA_M-pyrifera_M_contig6884.16548.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4067bp|location=Sequence derived from alignment at M-pyrifera_M_contig6884:8555..12621- (Macrocystis pyrifera P11B4 male)
AGAGTGCCGGAGTTGCAGGGCCAAATTGAAGCGGCATCCGAGGAAGTGGG
CAGGGAACGCCAAAGGGCAGACGAGCTCCAAATGGAACAGGACCAAGCAG
CGGCACAGAGCAGCCAGGTGCAGAACGGCAACGGGAATAGGAAGGGGTGG
AGGGAGGGTTATGGTTGTTGCGCGGGTGGTACGTTTCCGCGCGGTAGGTG
GCGGGGACTAAAACGTCGCGCACGAGCGTTGCCGCGAGCTTTGGGATGTG
CTTTGGCATCGCGATAGCGGTGGCTGCGACCGCTGCTCGTGTGTATCTGA
TGTGTGGCTGTTTACATATGTGCGGCTGTGTACCTGTGCCTGCCTGTATG
TATGTCTGTGTGTGCCTCACGCGTCCCGCGCTTGACGGCCCGGCCTTCGT
TGATACAATCTCATTACAAGGCACGTTCTGCCGTTCGCGAGGGCGGAATT
GCGTCGAGGACGTCAAGACTGTACGTGCAGCATGACCCTCTCCCCCACCT
TTAACGCCTAGCCCCCGCCGCCCTTAGACGCGACCATTGCATGAAACTGT
TCTATCCTGTCTGGTATTGTAGGTCAAGGACCAGCTGTTCGACCTCGAGC
GGTCCGTGGAAATGTCTGAGTGGAACGGACGCAAGCTGATCCGCGAAAAT
GCGGGCCTGCAGTCCCTGCTCAATCGCAACAGAAAAAGGCGAGAATATGT
GTGTGTGCGCTTGGCTGTGTGTGTCGTGGTTCCGTTTCGCTATGCAAGCG
GTTGAATTGCCCCTTTTGTGCTCTTGCTGTGTTAAACCGGCACCGCTCGA
CGAAGGGTGGGATTAAATTCTGCAGATACAGCCCATCCCAAAGACCGAAT
GTTAGCTTTGGTTATACTGGTGAGGTGGGAGGGGAAGTCTGCTTGCTATC
TAGGGGTCAGAGTATGACATTTGGTATGAATAGCGACTCATAATAGTGTT
GGTGTTAAGACATTGTGTGCCGGACACGTTTGTGCATGCTTGTGAGATAA
CCGTGTACGTACAGCCAAGCAAAGGGGTTCTTGTACGCATGTTTCGTTTT
TTATCGACAAGCGCGCGGGACTTTTTACTCTACTGCTGTATCCCAAAAGG
TTAAAGTTGCCTCGTGCATGCCCCCCCGCCCGCCCCCCTTCCCCCGAAAA
CAAGCGTCTCCTCTTGACGACGATGCTTCTCTGGCGTTGGGTGAGATTTT
AGGCCCCTGTCTGTAGCCAGCCACGTCGAGCGCAATGGTTGACAGCGCAG
GGCCAACTCGCCGCACCGTCAGCCGTCGTGTCGAGTCAAGCACGCTTGCT
CCACCACCCCGCTCCCATCCCCATTCGATATCCCGAAGGTTCCAGAGGGA
GCTGTCGAAGCTCACTGAAGCGTCGACCGACTTGGCGGACAAGACGGTTG
CCCTAGAAGAGTTGGAGGCGGTGGTGGAGAGGGAGCGCGAGAGCGCGAAG
CAGCTCGACAACCAGGCAAGAGGATGCATCTGTATACGTTTCACGCGCTG
CACACGACAGCGTGCGTGTGCGCACGAACAGCCACAAAATTGTGCTTGCC
CTTTTATCAGAGGTTGGCCTCGCTGTTGCATCGTTTTCGTGATATTTTCC
TATAGAGTCCAAATCTGACTTTGCTGCTGCGAGCTGGTGTCGCGACGTAG
GCATCCCCTCCTCCCGATGAAGAAACACATCGCGCGTGTGATGAGCTGAG
CCAGAACATGCACATGTTTAGAGGGAGAAACCTCTCTCCTATTTTTGTTT
TTCAACCGCCCATGAGGGCTCCCAATGAAACGAGTCAAGGCGGTAGGCGG
AGAAACCAAAGTGGAAAAGTAGTGGAGAACAGCTTCAGACTTGCTTGCGT
CTGCCGCACGACTGACTACAAGAGGGCGAACTCGCTTCCTCGCTCCCATC
TGTGTGATGCCTCCCCTGATGTTTCGCGCACCTCACCGATTTTTTTTTTT
TAAACAAAAACAAGAATGACGCCCCCATCCCCTCGAACGGTATCAGGTGA
ACGACCTGAAGGAGAAAACCGCGGCGATGGCGGTCGAGCTCAGCGCCACG
CGAGACAAGCTGACAAAGGAGACGGAGAAGCGTCTTCGCGCGGAGGCTGC
CCTTCGGCAGGCGACAGACAGGTTAGCCTCTCCTCCTTACCACCTCAGGA
AAACGCTCTCCCAGTCAGAGTTTACGAGTGTGCTACGTGGTAGAGCTCGT
GGGTTCGCTGGAGCGAGGGATCGGGGTGGGTGCATGTGAAGCGGAGAAGA
TCAAAGGTGGTGTCGTGCTTGTCATGCTTGACCAGGAGTGGAAGGGAAGA
TGGTTGTTATTGGTCATGGTGAGGACGCTGAGGAAGGGGAGGAGGAGGAA
GAGAAGGAAGAGGAGGAGGAAGAGAAGGAGGAAGAGGAGGAAGAGGAGGA
GAAGGAGGAGAAATAGAACGACGTTCGGCTCAAAAATCAAGGCCGGACTT
GGGTCAAGCTGCCGGTTCGAGAGCACGAATGAAAAGTACACATGTCCGGA
ACACTATAAACGCGGATCGCACGCACGGCAAGGTGTGAAACGTGCACGTT
GCAAGCCAAAAACGTTTCTTCGTGCCAGAAACGAAGCCAAAGCAGAGGCG
ACCTCCAGCCCTGACAGCCCGTCCTCTGCAGGTTTTCATCGTGGTACCAC
CGCTCAATCAGTGAGCTAAAATGGCGCGCTAAAGAGGCAAAATATATTTT
TTTTTCCGAGAGACAAGAAACCGACCGTTCGTGTGACAACGCTGCAAACA
CTTATGTTGGCGCCTTTTGCCATTAACGCCACCGCCACCGCCGCCGCTGC
CGCTGCTGAGGCTAAACATGTTTTGGGGATTCGTGTCGCTGCACCCCTCC
TCCCCCCGCCCCCGCCCCCAACATGAAACGGTCAAACCCTCAATAAAATG
GACAATTATTAATCAGACAGATCAGATAGATCATCTAACAGATAACGATC
TACTGTAGATCTTCCAGGGGAGATAGGTTCCTGATCTGTATGGTCCTGCT
TATGTTGCCGAGTGGGAGTCGTACAATATTCATGAGCTATTATTGTTGGT
AGCAAATGTTTCCTCTGGGTGTGATCTATCTGCCCTATAAGGCAGATCCA
GCACATACATCCTCTCACAACGCCAGATGAGGAACTAGATCATTTATCTG
TAGATTGATCATCTACAGATCGCGTTGTGTCCCGAGATGCGCTATAGCCG
TACTTATAAAACGATATGGCGACGATCAAACCTGCGTGTGCCCTCGGCTT
GGCAGGAGCTACGTGGAGCAGTTGAAGGACGCCAATCAGGCCCTGCAAAA
GGCGAGGCAAGAGGGCCAGGCGGCGACGGAAGAAGTACAGGCGACGCTAA
GGGAGGAGAAGACCGGCTGGGCCCAGGAGAGGTTATCCCTCACTACCCGC
CTGGAAGAGGTGATGACGGTGGTGGTTGTAGTGGTGTGGTAGTCGTGGTG
GTGCTGGTGGCGTTGTTGATTAGTGATGGTAGTGGTGTGATGGCGATGGT
GGTAGTGGTGTTGGTGCGCGGTGAATGTTAGTGGTGGGGTTGATGTTGTT
GGTAGTTGGTGGTGGTGGCTACAGGTGGTGATGATGTTTCATTTTTGCTT
TTGTAATCGTCTCTTAAGTCGAATTCCCTCAGGCCTGTTCCGTTGGTCGT
GCTTGACGATTGATGGCGGCAGCGCTTCAGAGTTCCATCGGTTCGAGGTA
AGTTTTTTTCTGGTTTTGATTGACTTTTTGGCGGTCGCTCATATGGCGGC
GTTGGCTCGTTGCTTGGCAACGATGGAACTACTTGTTAACCGATCGATCT
ATTGGTTGGTTGATCGATCGGCAGACTTGCCGCGTTATTTAAGTACAGTA
TGGTAGCTGATTCTGGAATCGGACGTAAGTACATGCTGCCCATATCTACG
GTAAGGAAGTGCCGCTTTTGCACGTGCCTCGCGTGCCCGAATCCCTCCTC
TATCGCGCCCCCCAGGCGTTGCGTTCGACGGAGGCATTTTCCACACGGGT
TGCGGAGCTAGAAGGGGCCACGGACCAGCTGCGGAAGGAGTCGAAGGAGG
CCCAAGCAGAGGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6884:8555..12621-

>mRNA_M-pyrifera_M_contig6884.16548.1 ID=mRNA_M-pyrifera_M_contig6884.16548.1|Name=mRNA_M-pyrifera_M_contig6884.16548.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig6884:8555..12621- (Macrocystis pyrifera P11B4 male)
ATGGCGGTCGAGCTCAGCGCCACGCGAGACAAGCTGACAAAGGAGACGGA
GAAGCGTCTTCGCGCGGAGGCTGCCCTTCGGCAGGCGACAGACAGATGGC
GGTCGAGCTCAGCGCCACGCGAGACAAGCTGACAAAGGAGACGGAGAAGC
GTCTTCGCGCGGAGGCTGCCCTTCGGCAGGCGACAGACAGGAGCTACGTG
GAGCAGTTGAAGGACGCCAATCAGGCCCTGCAAAAGGCGAGGCAAGAGGG
CCAGGCGGCGACGGAAGAAGTACAGGCGACGCTAAGGGAGGAGAAGACCG
GCTGGGCCCAGGAGAGGTTATCCCTCACTACCCGCCTGGAAGAGGAGCTA
CGTGGAGCAGTTGAAGGACGCCAATCAGGCCCTGCAAAAGGCGAGGCAAG
AGGGCCAGGCGGCGACGGAAGAAGTACAGGCGACGCTAAGGGAGGAGAAG
ACCGGCTGGGCCCAGGAGAGGTTATCCCTCACTACCCGCCTGGAAGAGGC
GTTGCGTTCGACGGAGGCATTTTCCACACGGGTTGCGGAGCTAGAAGGGG
CCACGGACCAGCTGCGGAAGGAGTCGAAGGAGGCCCAAGCAGAGGTGTGA
GCGTTGCGTTCGACGGAGGCATTTTCCACACGGGTTGCGGAGCTAGAAGG
GGCCACGGACCAGCTGCGGAAGGAGTCGAAGGAGGCCCAAGCAGAGGTGT
GA
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