mRNA_M-pyrifera_M_contig68779.16539.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68779.16539.1
Unique NamemRNA_M-pyrifera_M_contig68779.16539.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Match: A0A5A8C4R4_CAFRO (PCI domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C4R4_CAFRO)

HSP 1 Score: 101 bits (251), Expect = 2.120e-22
Identity = 50/108 (46.30%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:  118 PGGEFWWDVLRTRVIQHNIRVA-------------------------KVAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSADVTRVLKLVERTAHLVQKERMV 366
            P G  WW VL  RV QHN+RVA                         ++ +LVT KD+WAR+DRP G++ F+  Q PA VL+ W AD++RVL LVERT HL++KERMV
Sbjct:  512 PQGARWWGVLHRRVAQHNLRVAARTFSRIKFDRLCELTALTPAVCEEELRDLVTAKDLWARVDRPAGVVLFRRRQKPAQVLTSWGADLSRVLALVERTTHLIRKERMV 619
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BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Match: A0A813A9Q5_9DINO (Psmd12 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A9Q5_9DINO)

HSP 1 Score: 99.4 bits (246), Expect = 7.300e-22
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:  124 GEFWWDVLRTRVIQHNIRVA-------------------------KVAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSADVTRVLKLVERTAHLVQKERMV 366
            G  WW VL  RV QHN+RVA                         ++ +LVT KD+WAR+DRP G++ F+  Q PA VL+ W AD++RVL LVERT HL++KERMV
Sbjct:  367 GARWWGVLHRRVAQHNLRVAARTFSRIKFDRLCELTALTPAVCEEELRDLVTAKDLWARVDRPAGVVLFRRRQKPAQVLTSWGADLSRVLALVERTTHLIRKERMV 472
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BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Match: A0A3R6Z824_9STRA (RPN5_C domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6Z824_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.270e-18
Identity = 37/84 (44.05%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:  124 GEFWWDVLRTRVIQHNIRVAKVAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSADVTRVLKLVERTAHLVQKERMVHGI 375
            G  W + + TR  +HNIRV++++ LV+   ++A+IDRP  II F   QSP  +L++WS D++ +L+LVE T HL+ KE M+H +
Sbjct:  390 GAQWLEDVHTRTTEHNIRVSRISALVSNGSVYAKIDRPAKIISFHKTQSPEELLTNWSTDISELLRLVETTCHLINKENMIHKV 473
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BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Match: A0A397AHD1_9STRA (RPN5_C domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AHD1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.680e-18
Identity = 37/82 (45.12%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:  124 GEFWWDVLRTRVIQHNIRVAKVAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSADVTRVLKLVERTAHLVQKERMVH 369
            G  W + + TR  +HNIRV++++ LV+   ++A+IDRP  II F   QSP  +L++WS D++ +L+LVE T HL+ KE M+H
Sbjct:  359 GAQWLEDVHTRTTEHNIRVSRISALVSNGSVYAKIDRPAKIISFHKTQSPEELLTNWSTDISELLRLVETTCHLINKENMIH 440
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BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Match: A0A6T1GVK0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A6T1GVK0_9DINO)

HSP 1 Score: 88.2 bits (217), Expect = 7.220e-18
Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:  109 APGPGGEFWWDVLRTRVIQHNIRV-------------------------AKVAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSADVTRVLKLVERTAHLVQKERMVHGIR 378
            AP  G    WDVLR RV+QHNI+V                         A+++ELV +K ++A+IDRP G I+F   Q+    L+DWS  +T++L LVE T HL+QKE+MVH  R
Sbjct:  360 APHEGAAARWDVLRKRVVQHNIKVISEYYEQIHTVRLCELLGLDDKAAEAELSELVCSKFVYAKIDRPAGTIRFGQRQTYTDRLNDWSDGITKMLDLVENTCHLIQKEQMVHAAR 474
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BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Match: A0A812RYR3_9DINO (PsmD12 protein (Fragment) n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RYR3_9DINO)

HSP 1 Score: 83.6 bits (205), Expect = 7.960e-18
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:   94 AKLNSAPGPGGEFWWDVLRTRVIQHNIRVA-------------------------KVAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSADVTRVLKLVERTAHLVQKERMVHGIR 378
            A    +P  G +  W++L+ RV+QHNI+V                          +++ELV +K ++ARIDRP G IKF   Q+    L+ WS ++T++L LVE T+HL+QKE+MVH  R
Sbjct:   31 AVFQDSPHEGAKERWELLKKRVVQHNIKVVSEYYEQIHIKRLCELVGLGDKETEEELSELVCSKFVYARIDRPAGTIKFGKKQTYIDRLNGWSDNITKMLDLVENTSHLIQKEQMVHAAR 150
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BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Match: H3H2P4_PHYRM (PCI domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3H2P4_PHYRM)

HSP 1 Score: 87.8 bits (216), Expect = 8.580e-18
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:  124 GEFWWDVLRTRVIQHNIRV-------------------------AKVAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSADVTRVLKLVERTAHLVQKERMVHGI 375
            G  WW  L TRV++HNIRV                         + ++ LV+   I+A+IDRP  ++ F  P SP   LSDWSAD++++L+LVE T HLV KE M+H I
Sbjct:  328 GAEWWKTLHTRVVEHNIRVVAEHYERIRLPHLANMIGLAEDLTESSISTLVSDGSIYAKIDRPAKLVSFHRPLSPEEQLSDWSADISQLLRLVETTCHLVNKENMIHKI 436
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BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Match: A0A1Y1YT98_9FUNG (PCI-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YT98_9FUNG)

HSP 1 Score: 86.7 bits (213), Expect = 2.230e-17
Identity = 46/105 (43.81%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  136 WDVLRTRVIQHNIRVAK-------------------------VAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSADVTRVLKLVERTAHLVQKERMVHGI 375
            W+ L  RVI+HNIRV                           +++LV +K I+ARIDRP GII F AP+ P  VL+DWS DV  +L L+E+T HL+ KE MVH I
Sbjct:  329 WNDLHKRVIEHNIRVVAKYYTRITTKRLTQLLDLSDRETEEFLSKLVVSKTIYARIDRPAGIISFSAPKDPNQVLNDWSHDVNSLLGLIEKTTHLINKEEMVHKI 433
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BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Match: A0A812X8D2_SYMPI (Rpn502 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812X8D2_SYMPI)

HSP 1 Score: 85.5 bits (210), Expect = 3.150e-17
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:   94 AKLNSAPGPGGEFWWDVLRTRVIQHNIRVA-------------------------KVAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSADVTRVLKLVERTAHLVQKERMVHGIR 378
            A    +P  G +  W++L+ RV+QHNI+V                          +++ELV +K ++ARIDRP G IKF   Q+    L+ WS ++TR+L LVE T+HL+QKE+MVH  R
Sbjct:  214 AVFQDSPHEGAKERWELLKKRVVQHNIKVVSEYYEQIHTKRLCELVGLGDKETEEELSELVCSKFVYARIDRPAGTIKFGKKQTYTDRLNSWSDNITRMLDLVENTSHLIQKEQMVHAAR 333
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BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Match: M4B3K1_HYAAE (PCI domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B3K1_HYAAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.320e-17
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 1 
Query:  124 GEFWWDVLRTRVIQHNIRV-------------------------AKVAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSADVTRVLKLVERTAHLVQKERMVHGI 375
            G  WW  L TRV+++NIRV                         + ++ LV++  ++A+IDRP  ++ F  P SP   LS+WSAD+T++L+LVE T HLV KE M+H I
Sbjct:  359 GAEWWKTLHTRVVEYNIRVVAEHFDRIRLPHLANMIGLTEDLTESSISTLVSSGSVYAKIDRPAKLVSFHRPLSPEEQLSNWSADITQLLRLVETTCHLVNKENMIHKI 467
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68779.16539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8C4R4_CAFRO2.120e-2246.30PCI domain-containing protein n=2 Tax=Cafeteria ro... [more]
A0A813A9Q5_9DINO7.300e-2246.23Psmd12 protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
A0A3R6Z824_9STRA3.270e-1844.05RPN5_C domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A397AHD1_9STRA5.680e-1845.12RPN5_C domain-containing protein n=4 Tax=Aphanomyc... [more]
A0A6T1GVK0_9DINO7.220e-1841.74Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A812RYR3_9DINO7.960e-1837.50PsmD12 protein (Fragment) n=1 Tax=Symbiodinium nat... [more]
H3H2P4_PHYRM8.580e-1840.37PCI domain-containing protein n=20 Tax=Phytophthor... [more]
A0A1Y1YT98_9FUNG2.230e-1743.81PCI-domain-containing protein n=1 Tax=Basidiobolus... [more]
A0A812X8D2_SYMPI3.150e-1738.33Rpn502 protein n=1 Tax=Symbiodinium pilosum TaxID=... [more]
M4B3K1_HYAAE6.320e-1738.53PCI domain-containing protein n=1 Tax=Hyaloperonos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68779contigM-pyrifera_M_contig68779:732..1190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue3e-15
Seed eggNOG ortholog164328.Phyra84667
Preferred namePSMD12
KEGG koko:K03035
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000338,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007088,GO:0007275,GO:0007346,GO:0008021,GO:0008150,GO:0008152,GO:0008180,GO:0008541,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016192,GO:0016579,GO:0016604,GO:0016607,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030071,GO:0030133,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044456,GO:0044464,GO:0045055,GO:0045202,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070382,GO:0070646,GO:0070647,GO:0071704,GO:0090068,GO:0097458,GO:0097708,GO:0098793,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
EggNOG OGs3Q8FN@4776,COG5071@1,KOG1498@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Exons2
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.0852346-CDS-M-pyrifera_M_contig68779:731..9111622816580.0852346-CDS-M-pyrifera_M_contig68779:731..911Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68779 732..911 +
1692278058.4175131-CDS-M-pyrifera_M_contig68779:731..9111692278058.4175131-CDS-M-pyrifera_M_contig68779:731..911Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68779 732..911 +
1622816580.0968945-CDS-M-pyrifera_M_contig68779:986..11901622816580.0968945-CDS-M-pyrifera_M_contig68779:986..1190Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68779 987..1190 +
1692278058.4296892-CDS-M-pyrifera_M_contig68779:986..11901692278058.4296892-CDS-M-pyrifera_M_contig68779:986..1190Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68779 987..1190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68779.16539.1prot_M-pyrifera_M_contig68779.16539.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68779 732..1190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68779.16539.1

>prot_M-pyrifera_M_contig68779.16539.1 ID=prot_M-pyrifera_M_contig68779.16539.1|Name=mRNA_M-pyrifera_M_contig68779.16539.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
LPLHSTPFKPIHFIKTPPTPLPLHSTPFKIWAKLNSAPGPGGEFWWDVLR
TRVIQHNIRVAKVAELVTTKDIWARIDRPGGIIKFKAPQSPAAVLSDWSA
DVTRVLKLVERTAHLVQKERMVHGIRE*
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mRNA from alignment at M-pyrifera_M_contig68779:732..1190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68779.16539.1 ID=mRNA_M-pyrifera_M_contig68779.16539.1|Name=mRNA_M-pyrifera_M_contig68779.16539.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig68779:732..1190+ (Macrocystis pyrifera P11B4 male)
CTTCCACTGCATTCTACTCCATTCAAACCCATCCACTTCATCAAAACACC
ACCCACACCACTTCCACTGCATTCTACTCCATTCAAAATTTGGGCCAAGT
TAAATTCAGCTCCAGGTCCCGGGGGTGAATTCTGGTGGGATGTGCTTCGT
ACTCGAGTCATCCAGCACAACATCAGGGTGGTGGCAGAGTACTATGAGCA
GGCGCACCTGGGGTCTTTGGCACGGCTCCTGGCGCTGGAGCAGAGCGAGC
TGGAGGCAAAGGTGGCAGAGCTCGTGACCACGAAGGACATTTGGGCAAGG
ATCGATCGACCAGGAGGCATCATCAAATTCAAAGCGCCGCAATCTCCAGC
CGCCGTTCTCTCTGACTGGTCCGCTGACGTCACTCGGGTGCTCAAACTGG
TGGAACGAACGGCCCACCTCGTCCAAAAGGAGAGAATGGTGCACGGAATC
AGGGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68779:732..1190+

>mRNA_M-pyrifera_M_contig68779.16539.1 ID=mRNA_M-pyrifera_M_contig68779.16539.1|Name=mRNA_M-pyrifera_M_contig68779.16539.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig68779:732..1190+ (Macrocystis pyrifera P11B4 male)
CTTCCACTGCATTCTACTCCATTCAAACCCATCCACTTCATCAAAACACC
ACCCACACCACTTCCACTGCATTCTACTCCATTCAAAATTTGGGCCAAGT
TAAATTCAGCTCCAGGTCCCGGGGGTGAATTCTGGTGGGATGTGCTTCGT
ACTCGAGTCATCCAGCACAACATCAGGGTGCTTCCACTGCATTCTACTCC
ATTCAAACCCATCCACTTCATCAAAACACCACCCACACCACTTCCACTGC
ATTCTACTCCATTCAAAATTTGGGCCAAGTTAAATTCAGCTCCAGGTCCC
GGGGGTGAATTCTGGTGGGATGTGCTTCGTACTCGAGTCATCCAGCACAA
CATCAGGGTGGCAAAGGTGGCAGAGCTCGTGACCACGAAGGACATTTGGG
CAAGGATCGATCGACCAGGAGGCATCATCAAATTCAAAGCGCCGCAATCT
CCAGCCGCCGTTCTCTCTGACTGGTCCGCTGACGTCACTCGGGTGCTCAA
ACTGGTGGAACGAACGGCCCACCTCGTCCAAAAGGAGAGAATGGTGCACG
GAATCAGGGAATAAGCAAAGGTGGCAGAGCTCGTGACCACGAAGGACATT
TGGGCAAGGATCGATCGACCAGGAGGCATCATCAAATTCAAAGCGCCGCA
ATCTCCAGCCGCCGTTCTCTCTGACTGGTCCGCTGACGTCACTCGGGTGC
TCAAACTGGTGGAACGAACGGCCCACCTCGTCCAAAAGGAGAGAATGGTG
CACGGAATCAGGGAATAA
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