mRNA_M-pyrifera_M_contig68741.16531.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68741.16531.1
Unique NamemRNA_M-pyrifera_M_contig68741.16531.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Match: I3SFB4_LOTJA (Alpha-galactosidase n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SFB4_LOTJA)

HSP 1 Score: 137 bits (345), Expect = 3.080e-38
Identity = 73/137 (53.28%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    1 GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAINQDSLGVQGRRVWSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITANLTTIGFAAGTSVSVRDLWTHTNNGTVSNTISASVPS 411
            GNGG TT+EY +HFS+W+L KAPLLIGCD+ +   A + +L N EVIA+NQD LGVQG++V SE    D+  EVW+ PLS+   A IL NRS S AT+TA+ + IG  +GTSV  RDLW H+   ++S  +SA + S
Sbjct:   61 GNGGMTTEEYRAHFSIWALAKAPLLIGCDIRSLDHATMELLSNSEVIAVNQDKLGVQGKKVKSES---DL--EVWAGPLSNNRLAVILWNRSSSKATVTASWSDIGLESGTSVDARDLWEHSTKSSISGEMSAELDS 192          
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Match: A0A0C9RJP7_9SPER (Alpha-galactosidase n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RJP7_9SPER)

HSP 1 Score: 139 bits (350), Expect = 2.280e-37
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAINQDSLGVQGRRVWSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITANLTTIGFAAGTSVSVRDLWTHTN 369
            GNGG TT+EY +HFS+W+LMKAPLLIGCD+ + S   + I+ NKEVI +NQD LGVQG+++  +G   D+  EVW+ PLS+K +A IL NRS STA+ITANL  +G ++ T V VRDLW H+N
Sbjct:  211 GNGGMTTEEYRAHFSIWALMKAPLLIGCDVRSASKETLEIVGNKEVINVNQDPLGVQGKKISFQG---DL--EVWAGPLSNKRKAVILWNRSSSTASITANLEDLGLSSNTLVQVRDLWAHSN 328          
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Match: A0A2R6RTC4_ACTCC (Alpha-galactosidase n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RTC4_ACTCC)

HSP 1 Score: 131 bits (329), Expect = 4.850e-36
Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    1 GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAINQDSLGVQGRRVWSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITANLTTIGFAAGTSVSVRDLWTH 363
            GNGG T  EY +HFS+W+LMKAPLL+GCD+ N +     IL NKEVIA+NQD LGVQGR+V+  GT D +  +VW+ PL+    A +L NR    ATITA   T+G  +  SVSVRDLW H
Sbjct:   32 GNGGMTYQEYQAHFSIWALMKAPLLVGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVYVSGTDDCL--QVWAGPLTGHRLAVVLWNRCSKAATITAAWGTLGLESSISVSVRDLWKH 150          
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Match: UPI0011D22AEF (alpha-galactosidase-like n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D22AEF)

HSP 1 Score: 137 bits (344), Expect = 5.270e-36
Identity = 71/137 (51.82%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    1 GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAINQDSLGVQGRRVWSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITANLTTIGFAAGTSVSVRDLWTHTNNGTVSNTISASVPS 411
            GNGG TT+EY SHFS+W+L+KAPLLIGCDL +     + +L NKEVIA+NQD LGVQG++V S+G       +VW+ PLS    A +L NR  STAT+TA+ + IG  + T V  RDLW HT   +++  ISA + S
Sbjct:  274 GNGGMTTEEYRSHFSIWALVKAPLLIGCDLRSMDSTTLELLSNKEVIAVNQDRLGVQGKKVKSDGNL-----QVWAGPLSANKVAVVLWNRGSSTATVTASWSDIGLKSTTVVDARDLWMHTTQSSINGQISADIDS 405          
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Match: S8C309_9LAMI (Alpha-galactosidase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C309_9LAMI)

HSP 1 Score: 135 bits (341), Expect = 6.920e-36
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAINQDSLGVQGRRVWSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITANLTTIGFAAGTSVSVRDLWTH 363
            GNGG + DEY +HFSLW+LMK+PLLIGCD+ N SP    IL N+EVIA+NQDSLGVQGR+V+  G  D  +++VW+ P+S +  A +L NRS  TATIT   + +G  +  +VS+RDLW H
Sbjct:  230 GNGGMSYDEYRAHFSLWALMKSPLLIGCDVRNMSPETFEILSNEEVIAVNQDSLGVQGRKVYLYGPGD--SYQVWAGPISGQRLAVLLWNRSAKTATITVQWSHLGLESSAAVSIRDLWKH 348          
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Match: B9S4D3_RICCO (Alpha-galactosidase n=1 Tax=Ricinus communis TaxID=3988 RepID=B9S4D3_RICCO)

HSP 1 Score: 134 bits (338), Expect = 1.470e-35
Identity = 70/121 (57.85%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAINQDSLGVQGRRVWSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITANLTTIGFAAGTSVSVRDLWTH 363
            GNGG T  EY +HFS+W+LMKAPLLIGCD+ N +     IL NKEVIA+NQDSLGVQGR+V + GT  D   +VW+ PLS    A +L NR    ATITA    +G  +GTSV+VRDLW H
Sbjct:  207 GNGGMTYQEYRAHFSIWALMKAPLLIGCDVRNMTAETYEILTNKEVIAVNQDSLGVQGRKVQASGT--DGCLQVWAGPLSGHRMAVVLWNRCSKAATITARWDALGLESGTSVAVRDLWQH 325          
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Match: A0A804IXT3_MUSAM (Alpha-galactosidase n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804IXT3_MUSAM)

HSP 1 Score: 135 bits (340), Expect = 1.710e-35
Identity = 73/138 (52.90%), Postives = 95/138 (68.84%), Query Frame = 1
Query:    1 GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAINQDSLGVQGRRV-WSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITANLTTIGFAAGTSVSVRDLWTHTNNGTVSNTISASVPS 411
            GNGG TT+EY SHFS+W+L KAPLLIGCD+ + S   + IL N EVIA+NQDSLGVQG++V W  GT      EVW+ PLS  + A +L NR  S ATITA  + IG ++ T V+ RDLW H++  +V   ++A+V S
Sbjct:  264 GNGGMTTEEYRSHFSIWALAKAPLLIGCDVRSISEDALEILSNSEVIAVNQDSLGVQGKKVVWGGGT------EVWAGPLSGGTVAVVLWNRGSSPATITAEWSDIGLSSSTVVNARDLWAHSDTASVQGELTATVDS 395          
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Match: UPI0010368F67 (alpha-galactosidase 3-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010368F67)

HSP 1 Score: 130 bits (328), Expect = 1.850e-35
Identity = 69/121 (57.02%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    1 GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAINQDSLGVQGRRVWSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITANLTTIGFAAGTSVSVRDLWTH 363
            GNGG T  EY +HFS+W+LMKAPLLIGCD+ N +     +L NKEVIA+NQD LGVQGR+V   GT D    +VW+ PL+ +S A  L NR    ATITA   T+G  + TSVSVRDLW H
Sbjct:   68 GNGGMTYLEYRAHFSIWALMKAPLLIGCDVRNMTAETFELLSNKEVIAVNQDPLGVQGRKVHVAGTND--CRQVWAGPLTGQSLAVALWNRCSKAATITAAWGTLGLESSTSVSVRDLWKH 186          
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Match: A0A3N7G7W0_POPTR (Alpha-galactosidase n=1 Tax=Populus trichocarpa TaxID=3694 RepID=A0A3N7G7W0_POPTR)

HSP 1 Score: 133 bits (335), Expect = 1.880e-35
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    1 GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAINQDSLGVQGRRVWSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITANLTTIGFAAGTSVSVRDLWTHTNNGTVSNTISASVPS 411
            GNGG TT+EY SHFS+W+L KAPLLIGCD+   S   I IL N+EVIA+NQD LGVQG++V + G   D+  EVW+ PLS+   A +L NR  S AT+TA  + IG    T+V+ RDLW H+N  +V   ISA + S
Sbjct:  180 GNGGMTTEEYRSHFSIWALAKAPLLIGCDVRTMSDETIEILSNREVIAVNQDKLGVQGKKVKNNG---DL--EVWAGPLSNNKIAVVLWNRGSSRATVTAYWSDIGLDPTTTVNARDLWAHSNQPSVKGQISADLDS 311          
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Match: A0A830BM62_9LAMI (Alpha-galactosidase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BM62_9LAMI)

HSP 1 Score: 135 bits (339), Expect = 2.970e-35
Identity = 67/121 (55.37%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAINQDSLGVQGRRVWSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITANLTTIGFAAGTSVSVRDLWTH 363
            GNGG T++EY +HFS+W+LMKAPLLIGCD+ N +   + IL N+EVIA+NQD LGVQGR+V++ G PD   ++VW+ PLS++  A +L NR   T TITA  + +G  +  SVSVRDLW H
Sbjct:  266 GNGGMTSEEYRAHFSIWALMKAPLLIGCDVRNITAETLEILSNEEVIAVNQDPLGVQGRKVYASG-PDG-CYQVWAGPLSEQRLAVVLWNRCSKTGTITAKWSVLGLESSISVSVRDLWKH 384          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68741.16531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I3SFB4_LOTJA3.080e-3853.28Alpha-galactosidase n=1 Tax=Lotus japonicus TaxID=... [more]
A0A0C9RJP7_9SPER2.280e-3757.72Alpha-galactosidase n=1 Tax=Wollemia nobilis TaxID... [more]
A0A2R6RTC4_ACTCC4.850e-3655.37Alpha-galactosidase n=1 Tax=Actinidia chinensis va... [more]
UPI0011D22AEF5.270e-3651.82alpha-galactosidase-like n=1 Tax=Syzygium oleosum ... [more]
S8C309_9LAMI6.920e-3655.37Alpha-galactosidase (Fragment) n=1 Tax=Genlisea au... [more]
B9S4D3_RICCO1.470e-3557.85Alpha-galactosidase n=1 Tax=Ricinus communis TaxID... [more]
A0A804IXT3_MUSAM1.710e-3552.90Alpha-galactosidase n=1 Tax=Musa acuminata subsp. ... [more]
UPI0010368F671.850e-3557.02alpha-galactosidase 3-like n=1 Tax=Camellia sinens... [more]
A0A3N7G7W0_POPTR1.880e-3553.28Alpha-galactosidase n=1 Tax=Populus trichocarpa Ta... [more]
A0A830BM62_9LAMI2.970e-3555.37Alpha-galactosidase n=1 Tax=Phtheirospermum japoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68741contigM-pyrifera_M_contig68741:3..986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score136.7
Seed ortholog evalue8e-30
Seed eggNOG ortholog4641.GSMUA_Achr4P29920_001
KEGG rclassRC00049,RC00059,RC00451
KEGG koko:K07407
KEGG ReactionR01101,R01103,R01104,R01194,R01329,R02926,R03634,R04019,R04470,R05549,R05961,R06091
KEGG Pathwayko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004557,GO:0005575,GO:0005576,GO:0005618,GO:0005623,GO:0007275,GO:0008150,GO:0009505,GO:0009605,GO:0009607,GO:0009620,GO:0009653,GO:0009909,GO:0009911,GO:0009965,GO:0010016,GO:0015925,GO:0016787,GO:0016798,GO:0030312,GO:0032501,GO:0032502,GO:0043207,GO:0044464,GO:0048046,GO:0048366,GO:0048367,GO:0048518,GO:0048580,GO:0048582,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0065007,GO:0071944,GO:0099402,GO:1905392,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.Alpha galactosidase A
EggNOG OGs37MJ5@33090,3GCPI@35493,3KX5K@4447,KOG2366@1,KOG2366@2759
EC3.2.1.22
COG Functional cat.G
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.7086983-CDS-M-pyrifera_M_contig68741:2..2021622816579.7086983-CDS-M-pyrifera_M_contig68741:2..202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68741 3..202 -
1692278058.2131646-CDS-M-pyrifera_M_contig68741:2..2021692278058.2131646-CDS-M-pyrifera_M_contig68741:2..202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68741 3..202 -
1622816579.721273-CDS-M-pyrifera_M_contig68741:775..9861622816579.721273-CDS-M-pyrifera_M_contig68741:775..986Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68741 776..986 -
1692278058.2269657-CDS-M-pyrifera_M_contig68741:775..9861692278058.2269657-CDS-M-pyrifera_M_contig68741:775..986Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68741 776..986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68741.16531.1prot_M-pyrifera_M_contig68741.16531.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68741 3..986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68741.16531.1

>prot_M-pyrifera_M_contig68741.16531.1 ID=prot_M-pyrifera_M_contig68741.16531.1|Name=mRNA_M-pyrifera_M_contig68741.16531.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
GNGGCTTDEYTSHFSLWSLMKAPLLIGCDLTNTSPADIAILQNKEVIAIN
QDSLGVQGRRVWSEGTPDDIAHEVWSIPLSDKSRAAILLNRSPSTATITA
NLTTIGFAAGTSVSVRDLWTHTNNGTVSNTISASVPS
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mRNA from alignment at M-pyrifera_M_contig68741:3..986-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68741.16531.1 ID=mRNA_M-pyrifera_M_contig68741.16531.1|Name=mRNA_M-pyrifera_M_contig68741.16531.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig68741:3..986- (Macrocystis pyrifera P11B4 male)
GGGAATGGGGGGTGCACGACAGATGAGTACACAAGCCACTTCAGTTTGTG GTCGTTGATGAAGGCTCCTCTCCTCATTGGTTGTGATTTGACGAACACAA GCCCCGCAGATATTGCAATTTTGCAAAACAAAGAGGTCATTGCCATCAAC CAAGACTCCTTGGGCGTGCAAGGGCGACGTGTATGGAGCGAAGGAACACC CGATGACATCGGTACAGAAAAGAAACCAGAGAGCCACCCTGGATACCTCA CAAGGGACATTGATCTCTTGATGTCTCTGTCAGCTCTTGGAGCAACAAAC CTGGTCGCAGAATCATGTGATGGGTCTGGTTGGCAGAAGTGGTCCATGGA TTCGGAGGGCAACATTCGTGAAGCACAGGATGGACGCTGCGTTGACATTG ATTGCTGTAACGAGAGCAAAGACGACCCAAACAACGTGAGCGTCTTCCCT TGTCATGATGGTAGCGACGAAAAAGTAGAGGAAGACGCAGAGGAAAACAA GTTCACATGTGGGTCGTGTGGAGACACAAACCAACATTGGAAGTATGACA ATTCCACATCAGCGTTTGTATCTGCGCTATCTGGTCAGTGTCTCACTGCT GTGGAAACGTTTTCTTCACGCAATGCTGGCGCACGTGAAGTTGGAGCAGC GGTTTGGAACGTGGCAACTGTTCCATGTTATGGCTCTGCGTCCCAAAAGT GGATCATGAATCATGATGGTACCATTTCAAGCGGCATAGGCAGTGATGTA TGCCTTGGCGTGTTCAATGATGTTCCAGCTGGAGCGCATGAGGTTTGGTC CATCCCTTTGAGCGACAAGTCCCGAGCAGCTATTCTGTTGAACCGTTCGC CTTCCACTGCCACCATCACTGCAAACCTCACCACAATTGGCTTTGCTGCA GGTACATCTGTGTCTGTGCGTGATCTTTGGACGCACACGAACAATGGCAC TGTGTCGAACACAATCTCAGCATCAGTGCCTTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68741:3..986-

>mRNA_M-pyrifera_M_contig68741.16531.1 ID=mRNA_M-pyrifera_M_contig68741.16531.1|Name=mRNA_M-pyrifera_M_contig68741.16531.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig68741:3..986- (Macrocystis pyrifera P11B4 male)
GGGAATGGGGGGTGCACGACAGATGAGTACACAAGCCACTTCAGTTTGTG
GTCGTTGATGAAGGCTCCTCTCCTCATTGGTTGTGATTTGACGAACACAA
GCCCCGCAGATATTGCAATTTTGCAAAACAAAGAGGTCATTGCCATCAAC
CAAGACTCCTTGGGCGTGCAAGGGCGACGTGTATGGAGCGAAGGAACACC
CGATGACATCGGGGAATGGGGGGTGCACGACAGATGAGTACACAAGCCAC
TTCAGTTTGTGGTCGTTGATGAAGGCTCCTCTCCTCATTGGTTGTGATTT
GACGAACACAAGCCCCGCAGATATTGCAATTTTGCAAAACAAAGAGGTCA
TTGCCATCAACCAAGACTCCTTGGGCGTGCAAGGGCGACGTGTATGGAGC
GAAGGAACACCCGATGACATCGCGCATGAGGTTTGGTCCATCCCTTTGAG
CGACAAGTCCCGAGCAGCTATTCTGTTGAACCGTTCGCCTTCCACTGCCA
CCATCACTGCAAACCTCACCACAATTGGCTTTGCTGCAGGTACATCTGTG
TCTGTGCGTGATCTTTGGACGCACACGAACAATGGCACTGTGTCGAACAC
AATCTCAGCATCAGTGCCTTCTCGCATGAGGTTTGGTCCATCCCTTTGAG
CGACAAGTCCCGAGCAGCTATTCTGTTGAACCGTTCGCCTTCCACTGCCA
CCATCACTGCAAACCTCACCACAATTGGCTTTGCTGCAGGTACATCTGTG
TCTGTGCGTGATCTTTGGACGCACACGAACAATGGCACTGTGTCGAACAC
AATCTCAGCATCAGTGCCTTCT
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