mRNA_M-pyrifera_M_contig6874.16529.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig6874.16529.1
Unique NamemRNA_M-pyrifera_M_contig6874.16529.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig6874.16529.1 vs. uniprot
Match: D8LBD0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBD0_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 9.360e-10
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query: 1525 PAGWQAVPDKSSGDTYYWNKATGQTTWDFP 1614
            P GWQAVPDKSSGDTYYWNKATGQTTWDFP
Sbjct:  276 PPGWQAVPDKSSGDTYYWNKATGQTTWDFP 305
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BLAST of mRNA_M-pyrifera_M_contig6874.16529.1 vs. uniprot
Match: A0A6H5KKE1_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.980e-9
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query: 1525 PAGWQAVPDKSSGDTYYWNKATGQTTWDFP 1614
            P GWQAVPDKSSGDTYYWNKATGQTTWDFP
Sbjct:  860 PPGWQAVPDKSSGDTYYWNKATGQTTWDFP 889
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig6874.16529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBD0_ECTSI9.360e-1096.67WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KKE1_9PHAE3.980e-996.67WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig6874contigM-pyrifera_M_contig6874:5621..8274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-27_004390.1
Exons3
Model size1620
Cds size1620
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig6874.16529.1prot_M-pyrifera_M_contig6874.16529.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig6874 5621..8274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.5220819-CDS-M-pyrifera_M_contig6874:5620..65801622816579.5220819-CDS-M-pyrifera_M_contig6874:5620..6580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6874 5621..6580 -
1692278058.0882497-CDS-M-pyrifera_M_contig6874:5620..65801692278058.0882497-CDS-M-pyrifera_M_contig6874:5620..6580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6874 5621..6580 -
1622816579.5331619-CDS-M-pyrifera_M_contig6874:7035..74551622816579.5331619-CDS-M-pyrifera_M_contig6874:7035..7455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6874 7036..7455 -
1692278058.1000504-CDS-M-pyrifera_M_contig6874:7035..74551692278058.1000504-CDS-M-pyrifera_M_contig6874:7035..7455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6874 7036..7455 -
1622816579.5441177-CDS-M-pyrifera_M_contig6874:8034..82741622816579.5441177-CDS-M-pyrifera_M_contig6874:8034..8274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6874 8035..8274 -
1692278058.1103635-CDS-M-pyrifera_M_contig6874:8034..82741692278058.1103635-CDS-M-pyrifera_M_contig6874:8034..8274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig6874 8035..8274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig6874.16529.1

>prot_M-pyrifera_M_contig6874.16529.1 ID=prot_M-pyrifera_M_contig6874.16529.1|Name=mRNA_M-pyrifera_M_contig6874.16529.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=540bp
RQPPAAPPSSQPPPQAPSSRFGAPLPAPPQNGSSTTASPSFKPDGRTQAP
PSGPPAYQSRFGPPTTNQQFSPQQAAPRQQQQQQGQQQQPGQQQPGQQQQ
QQQQQQQQPGQQQQPGQQPGRTSQTNTFASRPPSGYGAPTAQPGFGAALP
SASRSAPPGFAPPSLPPQVSAGVSPSSPQFAPQQSQGYQPPQQPGQQPGQ
QPGQQPGQQPGQQPGQQPPQPPQQQPQAQQPQHTQQRDQFPPRQQPPSLQ
ARPTAGLPQQPPVQPQPGQQIMGGQGGPGQFGGPYAAPPMVGGVAPPAQY
GGRAGGATVPATAPKPAVAPPLLDPYGRPIPQAKPPQQQAPSQPQPSASL
PFNTPSGPPQQPQQQQQQKQQEQQPRQPKPQQFDAYGRPIPHEHQQPPQQ
QPPQQLPPQLDPYGRPIAQSQQQQQQQQQQQQQQQRQQPQQSQQTQQPQQ
PQQPQPQQQQQTSAAAAFGQYATQQRTQAPAPAPTPAPTPAPAPIPAPAP
AVPATPALPAGWQAVPDKSSGDTYYWNKATGQTTWDFPK*
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mRNA from alignment at M-pyrifera_M_contig6874:5621..8274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig6874.16529.1 ID=mRNA_M-pyrifera_M_contig6874.16529.1|Name=mRNA_M-pyrifera_M_contig6874.16529.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2654bp|location=Sequence derived from alignment at M-pyrifera_M_contig6874:5621..8274- (Macrocystis pyrifera P11B4 male)
AGGCAGCCCCCCGCAGCGCCTCCTTCTTCCCAGCCCCCCCCCCAGGCCCC
GTCGTCCCGGTTCGGTGCGCCGCTGCCAGCCCCCCCCCAGAACGGCTCCT
CTACGACGGCGTCTCCGAGCTTCAAACCGGACGGGAGGACACAGGCACCG
CCGAGCGGACCGCCCGCTTACCAGTCGCGCTTTGGACCGCCGACGACCAA
TCAGCAGTTCTCGCCCCAGCAAGCGGCTCCGCGCCAGCAGGTGGCCCCTT
CTCATGGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGATAAC
CGATCAGACCGTCAGGTGGGTGCTCGCAGTGTTTGTTCTGTTGCGATATT
TTTTGGTTCTGCTTGCATTGGTCCCAAGAAAGGCAGGCGAGACCGGGGGG
GAATCATGTTGAAGGTAAATCTGGCGCGGCGCGTTTTCGCATTCTGCAAC
CCCTACAGTGAAATAGTTTTAGAGACAGGAAATCTGCTATGGCCGGCGAG
AAGTGGCGCAATGTTCTGCTCGGGTGGGCTGCCAAGGCCCGGACTGTCAC
CCTCTACCTGGACAATTATTTCGTTTCGTCTGTTCACATGACTACTCGCC
ACTTCAAGACGCCATGCTGGCCACCAAGCCGTCTCAAACCAACGCGCAAA
GCTCGGTGTTTTCGTCGCTTGATGCCTTCAGGTGATATCTGGGCAGCAGC
AGCAACACGGGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACAAGGACAGCAGCAACAGCACGTTCAGCAGCAGCAGCAAGGACA
GCAGCAACAGCACGGTCAGCAGCAGCAGCAAGGACAGCAGCAGCAGCCAG
GACAGCAGCAGCCAGGACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAG
CAGCCAGGACAGCAGCAGCAACCAGGGCAGCAGCCAGGCAGGACTTCTCA
GACGAACACGTTTGCGAGCCGACCGCCCTCTGGGTACGGTGCTCCTACTG
CTCAGCCAGGGTTCGGCGCCGCCTTGCCCTCGGCATCCCGAAGCGCCCCG
CCTGGCTTCGCCCCCCCGTCGTTGCCTCCTCAAGTTAGCGCCGGTGTTTC
ACCGTCTTCACCTCAGTTCGCCCCGCAGCAGAGCCAGGGATACCAGCCTC
CACAGCAGCCCGGCCAGCAGCCCGGCCAGCAACCCGGCCAGCAGCCCGGC
CAGCAACCCGGCCAGCAGCCCGGCCAGCAGCCTCCTCAGGTGGGTTGGAG
TATTGTCCTTCCTGTGCTTACTCTATGTCTTGGTACCCTGATATAACTGT
GCCTCGCTCCTACTAGAATGATATGTTGTGAGCGCAATGAGTGTTTGCGG
AGATCGGGAATATATTTGGCCCGCTCTTGCGTGTAGCGACCTAAACAAAC
AGTTTCCGGCTTTCTTCCGCATAATATTTCCGACGCCGTTCGTAGCACAG
CTACCCTCCCTCCGCATTGTCCATAGATGCCCATGATTGAGCTGAGCGTG
TGTAACCTCGTTTTTGGTTTGCGTTTCCCACTGCTTTACAGGTACCGCCG
CTCGGTTTCGGAGGGCCACCGGTGTCCGCCCCAGGAGGTCCGCCAGCGGG
CCTGCCGGGGGCCCTGCCGGGGGCCCCGCCGGGGGCCCCGCCAGGGGTGC
CCCCTGGACTGCCGCCTGGACTGCCCCAGTTCCAACCGCAACAGCCGCCA
CAGCAGCAACCCCAGGCGCAGCAACCGCAACACACGCAGCAGCGTGACCA
ATTCCCTCCTCGGCAACAACCGCCTTCGCTGCAGGCCCGTCCGACGGCGG
GTTTGCCGCAGCAACCTCCCGTGCAGCCGCAGCCGGGGCAGCAGATCATG
GGAGGACAGGGAGGACCCGGGCAGTTCGGCGGGCCGTACGCCGCTCCGCC
GATGGTAGGGGGAGTTGCCCCGCCTGCGCAATATGGAGGGCGTGCAGGGG
GCGCGACGGTGCCCGCAACCGCGCCCAAGCCAGCGGTAGCACCACCGCTT
TTGGACCCGTACGGTCGACCGATTCCGCAGGCTAAGCCGCCGCAGCAGCA
AGCCCCGTCCCAGCCTCAACCGTCTGCGTCGTTACCGTTTAATACCCCTA
GCGGACCCCCTCAACAGCCGCAGCAGCAACAGCAACAGAAGCAGCAGGAA
CAACAACCGCGTCAGCCCAAGCCTCAGCAGTTTGACGCCTACGGCCGTCC
AATCCCCCATGAGCATCAACAGCCTCCGCAACAGCAGCCGCCCCAACAGC
TCCCACCTCAGCTGGACCCGTACGGCCGACCTATCGCCCAGAGCCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACGACAACAGCC
GCAGCAGTCGCAACAGACGCAGCAGCCCCAGCAGCCCCAGCAGCCCCAGC
CCCAGCAGCAACAGCAAACGAGCGCGGCAGCGGCGTTTGGCCAGTACGCG
ACGCAACAGCGTACCCAAGCGCCGGCCCCCGCCCCCACGCCGGCTCCAAC
TCCGGCCCCAGCCCCTATACCAGCTCCGGCACCGGCCGTCCCGGCTACCC
CTGCGTTGCCTGCTGGCTGGCAGGCGGTCCCGGACAAGAGCAGCGGGGAC
ACATACTACTGGAACAAGGCTACGGGACAGACAACCTGGGATTTTCCGAA
GTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig6874:5621..8274-

>mRNA_M-pyrifera_M_contig6874.16529.1 ID=mRNA_M-pyrifera_M_contig6874.16529.1|Name=mRNA_M-pyrifera_M_contig6874.16529.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3240bp|location=Sequence derived from alignment at M-pyrifera_M_contig6874:5621..8274- (Macrocystis pyrifera P11B4 male)
AGGCAGCCCCCCGCAGCGCCTCCTTCTTCCCAGCCCCCCCCCCAGGCCCC
GTCGTCCCGGTTCGGTGCGCCGCTGCCAGCCCCCCCCCAGAACGGCTCCT
CTACGACGGCGTCTCCGAGCTTCAAACCGGACGGGAGGACACAGGCACCG
CCGAGCGGACCGCCCGCTTACCAGTCGCGCTTTGGACCGCCGACGACCAA
TCAGCAGTTCTCGCCCCAGCAAGCGGCTCCGCGCCAGCAGAGGCAGCCCC
CCGCAGCGCCTCCTTCTTCCCAGCCCCCCCCCCAGGCCCCGTCGTCCCGG
TTCGGTGCGCCGCTGCCAGCCCCCCCCCAGAACGGCTCCTCTACGACGGC
GTCTCCGAGCTTCAAACCGGACGGGAGGACACAGGCACCGCCGAGCGGAC
CGCCCGCTTACCAGTCGCGCTTTGGACCGCCGACGACCAATCAGCAGTTC
TCGCCCCAGCAAGCGGCTCCGCGCCAGCAGCAGCAGCAGCAAGGACAGCA
GCAGCAGCCAGGACAGCAGCAGCCAGGACAGCAGCAACAGCAGCAGCAGC
AGCAGCAGCAGCAGCCAGGACAGCAGCAGCAACCAGGGCAGCAGCCAGGC
AGGACTTCTCAGACGAACACGTTTGCGAGCCGACCGCCCTCTGGGTACGG
TGCTCCTACTGCTCAGCCAGGGTTCGGCGCCGCCTTGCCCTCGGCATCCC
GAAGCGCCCCGCCTGGCTTCGCCCCCCCGTCGTTGCCTCCTCAAGTTAGC
GCCGGTGTTTCACCGTCTTCACCTCAGTTCGCCCCGCAGCAGAGCCAGGG
ATACCAGCCTCCACAGCAGCCCGGCCAGCAGCCCGGCCAGCAACCCGGCC
AGCAGCCCGGCCAGCAACCCGGCCAGCAGCCCGGCCAGCAGCCTCCTCAG
CAGCAGCAGCAAGGACAGCAGCAGCAGCCAGGACAGCAGCAGCCAGGACA
GCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGGACAGCAGCAGC
AACCAGGGCAGCAGCCAGGCAGGACTTCTCAGACGAACACGTTTGCGAGC
CGACCGCCCTCTGGGTACGGTGCTCCTACTGCTCAGCCAGGGTTCGGCGC
CGCCTTGCCCTCGGCATCCCGAAGCGCCCCGCCTGGCTTCGCCCCCCCGT
CGTTGCCTCCTCAAGTTAGCGCCGGTGTTTCACCGTCTTCACCTCAGTTC
GCCCCGCAGCAGAGCCAGGGATACCAGCCTCCACAGCAGCCCGGCCAGCA
GCCCGGCCAGCAACCCGGCCAGCAGCCCGGCCAGCAACCCGGCCAGCAGC
CCGGCCAGCAGCCTCCTCAGCCGCCACAGCAGCAACCCCAGGCGCAGCAA
CCGCAACACACGCAGCAGCGTGACCAATTCCCTCCTCGGCAACAACCGCC
TTCGCTGCAGGCCCGTCCGACGGCGGGTTTGCCGCAGCAACCTCCCGTGC
AGCCGCAGCCGGGGCAGCAGATCATGGGAGGACAGGGAGGACCCGGGCAG
TTCGGCGGGCCGTACGCCGCTCCGCCGATGGTAGGGGGAGTTGCCCCGCC
TGCGCAATATGGAGGGCGTGCAGGGGGCGCGACGGTGCCCGCAACCGCGC
CCAAGCCAGCGGTAGCACCACCGCTTTTGGACCCGTACGGTCGACCGATT
CCGCAGGCTAAGCCGCCGCAGCAGCAAGCCCCGTCCCAGCCTCAACCGTC
TGCGTCGTTACCGTTTAATACCCCTAGCGGACCCCCTCAACAGCCGCAGC
AGCAACAGCAACAGAAGCAGCAGGAACAACAACCGCGTCAGCCCAAGCCT
CAGCAGTTTGACGCCTACGGCCGTCCAATCCCCCATGAGCATCAACAGCC
TCCGCAACAGCAGCCGCCCCAACAGCTCCCACCTCAGCTGGACCCGTACG
GCCGACCTATCGCCCAGAGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACGACAACAGCCGCAGCAGTCGCAACAGACGCAGCA
GCCCCAGCAGCCCCAGCAGCCCCAGCCCCAGCAGCAACAGCAAACGAGCG
CGGCAGCGGCGTTTGGCCAGTACGCGACGCAACAGCGTACCCAAGCGCCG
GCCCCCGCCCCCACGCCGGCTCCAACTCCGGCCCCAGCCCCTATACCAGC
TCCGGCACCGGCCGTCCCGGCTACCCCTGCGTTGCCTGCTGGCTGGCAGG
CGGTCCCGGACAAGAGCAGCGGGGACACATACTACTGGAACAAGGCTACG
GGACAGACAACCTGGGATTTTCCGAAGTAGCCGCCACAGCAGCAACCCCA
GGCGCAGCAACCGCAACACACGCAGCAGCGTGACCAATTCCCTCCTCGGC
AACAACCGCCTTCGCTGCAGGCCCGTCCGACGGCGGGTTTGCCGCAGCAA
CCTCCCGTGCAGCCGCAGCCGGGGCAGCAGATCATGGGAGGACAGGGAGG
ACCCGGGCAGTTCGGCGGGCCGTACGCCGCTCCGCCGATGGTAGGGGGAG
TTGCCCCGCCTGCGCAATATGGAGGGCGTGCAGGGGGCGCGACGGTGCCC
GCAACCGCGCCCAAGCCAGCGGTAGCACCACCGCTTTTGGACCCGTACGG
TCGACCGATTCCGCAGGCTAAGCCGCCGCAGCAGCAAGCCCCGTCCCAGC
CTCAACCGTCTGCGTCGTTACCGTTTAATACCCCTAGCGGACCCCCTCAA
CAGCCGCAGCAGCAACAGCAACAGAAGCAGCAGGAACAACAACCGCGTCA
GCCCAAGCCTCAGCAGTTTGACGCCTACGGCCGTCCAATCCCCCATGAGC
ATCAACAGCCTCCGCAACAGCAGCCGCCCCAACAGCTCCCACCTCAGCTG
GACCCGTACGGCCGACCTATCGCCCAGAGCCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAACGACAACAGCCGCAGCAGTCGCAAC
AGACGCAGCAGCCCCAGCAGCCCCAGCAGCCCCAGCCCCAGCAGCAACAG
CAAACGAGCGCGGCAGCGGCGTTTGGCCAGTACGCGACGCAACAGCGTAC
CCAAGCGCCGGCCCCCGCCCCCACGCCGGCTCCAACTCCGGCCCCAGCCC
CTATACCAGCTCCGGCACCGGCCGTCCCGGCTACCCCTGCGTTGCCTGCT
GGCTGGCAGGCGGTCCCGGACAAGAGCAGCGGGGACACATACTACTGGAA
CAAGGCTACGGGACAGACAACCTGGGATTTTCCGAAGTAG
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