mRNA_M-pyrifera_M_contig68733.16524.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68733.16524.1
Unique NamemRNA_M-pyrifera_M_contig68733.16524.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Match: A0A7S0PFY5_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PFY5_CAFRO)

HSP 1 Score: 117 bits (292), Expect = 7.070e-31
Identity = 55/83 (66.27%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 LVRLIPLNCPGLRVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLGRLNFFDPRRADGDYDLDLSVWEDRVLASILAQL 249
            +VR +PL+ PGLRVE+ V+LFP+++DL EFDRVLFAL+GPER+ VVRRLG LN ++P R DGDY LDL VWE+R++A++LAQL
Sbjct:   75 IVRALPLSVPGLRVEVAVSLFPRVLDLAEFDRVLFALSGPERKRVVRRLGWLNLWNPMRPDGDYVLDLRVWEERMMATLLAQL 157          
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Match: A0A7S0PGY1_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PGY1_CAFRO)

HSP 1 Score: 117 bits (292), Expect = 7.440e-30
Identity = 55/83 (66.27%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 LVRLIPLNCPGLRVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLGRLNFFDPRRADGDYDLDLSVWEDRVLASILAQL 249
            +VR +PL+ PGLRVE+ V+LFP+++DL EFDRVLFAL+GPER+ VVRRLG LN ++P R DGDY LDL VWE+R++A++LAQL
Sbjct:  187 IVRALPLSVPGLRVEVAVSLFPRVLDLAEFDRVLFALSGPERKRVVRRLGWLNLWNPMRPDGDYVLDLRVWEERMMATLLAQL 269          
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Match: A0A5A8CDT9_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CDT9_CAFRO)

HSP 1 Score: 117 bits (292), Expect = 1.130e-28
Identity = 55/83 (66.27%), Postives = 72/83 (86.75%), Query Frame = 1
Query:    1 LVRLIPLNCPGLRVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLGRLNFFDPRRADGDYDLDLSVWEDRVLASILAQL 249
            +VR +PL+ PGLRVE+ V+LFP+++DL EFDRVLFAL+GPER+ VVRRLG LN ++P R DGDY LDL VWE+R++A++LAQL
Sbjct:  805 IVRALPLSVPGLRVEVAVSLFPRVLDLAEFDRVLFALSGPERKRVVRRLGWLNLWNPMRPDGDYVLDLRVWEERMMATLLAQL 887          
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Match: A0A7S3HRF6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRF6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.360e-9
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   37 RVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLGRLNFFDPRRADGDYDLDLSVWEDRVLASILAQL 249
            RVELVV LF +I+DL  F  VL  L   E   +  R+G LNFF+P    G   LD+S W++R L  +L  L
Sbjct:   40 RVELVVKLFDRIIDLHNFQFVLMHLNAHEHAAICARIGYLNFFNPSFVTGGIQLDISRWDERQLVKMLIHL 110          
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Match: A0A7S3GN99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN99_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.360e-8
Identity = 30/71 (42.25%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   37 RVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLGRLNFFDPRRADGDYDLDLSVWEDRVLASILAQL 249
            RV+L+VALF ++VDL  F+ V+  L   E   +  RLG LN ++P + +G ++LD+S  E+RV+A  L  L
Sbjct:   34 RVDLIVALFGRVVDLHNFEFVMKVLAPSEVACLYCRLGWLNLYNPCKPEGAWELDMSRREERVIAKTLCVL 104          
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Match: A0A482T4Q9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T4Q9_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 2.890e-8
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   22 NCPGLRVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLGRLNFFDPRRADGDYDLDLSVWEDRVLASILAQL 249
            N    RVELVV +F +I+DL  F+ +L  L   E+  +  R+G LN F+P + +G    DL+ WE+R L  +   +
Sbjct:  105 NIGSYRVELVVMVFDRILDLQNFELILMMLNAEEQAALYARIGVLNVFNPSKPEGARSFDLTRWEERQLVKMFVHM 180          
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Match: A0A7S1XZJ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZJ5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.110e-8
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   37 RVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLGRLNFFDPRRADGDYDLDLSVWEDRVLASILAQL 249
            RV+L++ LF +IVDL  FD ++  L   E R ++ RLG LN  +P + DG Y LDL   E R L  +L +L
Sbjct:  651 RVQLIINLFSRIVDLENFDVIMTTLDDDEERELLHRLGGLNLKNPMKPDGFYFLDLRSREQRELCKMLVRL 721          
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Match: A0A7S3HDS8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDS8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.770e-6
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   37 RVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLGRLNFFDPRRADGDYDLDLSVWEDRVLASILAQL 249
            RVEL+V+L+ ++VD+   D VL  L   E  +++ RLG LN ++P +A+G   LDLS  E+R LA I+  L
Sbjct:  890 RVELIVSLYTRVVDVINMDFVLKELESTEYAMLLFRLGWLNIWNPIKAEGRVCLDLSRREERQLARIMLVL 960          
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Match: A0A329RPJ7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RPJ7_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.540e-6
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1
Query:   22 NCPGLRVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLGRLNFFDPRRADGDYD-LDLSVWEDRVLASILAQL 249
            N    R      +F +I+DL  F ++   L+  ++   V+RLG LN FDP + D  Y  L+LS+++DR +  ILAQL
Sbjct: 1116 NAVRARARAACLVFSRIIDLENFIQIYDGLSLEDQEECVKRLGWLNIFDPLQPDRQYPPLNLSIYDDREIVQILAQL 1192          
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Match: F0YFV2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFV2_AURAN)

HSP 1 Score: 52.4 bits (124), Expect = 6.240e-6
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    1 LVRLIPLNCPGLRVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLGRLNFFDPRRADGDYDLDLSVWEDRVLASILAQL 249
            LV   P N   LRVE+++A+F ++VDL  F  V+  L   E   +V RLG +N ++P  AD  Y L L V ++R +A +L +L
Sbjct: 1403 LVARFPRNAQQLRVEVLMAVFGRVVDLDNFYTVVDELDEEEIDELVFRLGYMNVYNPVFADRMYKLCLKVPDERQMAIVLVRL 1485          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68733.16524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7S0PFY5_CAFRO7.070e-3166.27Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A7S0PGY1_CAFRO7.440e-3066.27Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A5A8CDT9_CAFRO1.130e-2866.27Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S3HRF6_9STRA2.360e-945.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3GN99_9STRA2.360e-842.25Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A482T4Q9_9ARCH2.890e-836.84Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1XZJ5_9STRA4.110e-843.66Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HDS8_9STRA1.770e-643.66Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A329RPJ7_9STRA4.540e-637.66Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
F0YFV2_AURAN6.240e-639.76Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68733contigM-pyrifera_M_contig68733:67..315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.3708415-CDS-M-pyrifera_M_contig68733:66..3151622816579.3708415-CDS-M-pyrifera_M_contig68733:66..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68733 67..315 -
1692278058.021739-CDS-M-pyrifera_M_contig68733:66..3151692278058.021739-CDS-M-pyrifera_M_contig68733:66..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68733 67..315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68733.16524.1prot_M-pyrifera_M_contig68733.16524.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68733 67..315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68733.16524.1

>prot_M-pyrifera_M_contig68733.16524.1 ID=prot_M-pyrifera_M_contig68733.16524.1|Name=mRNA_M-pyrifera_M_contig68733.16524.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
LVRLIPLNCPGLRVELVVALFPKIVDLPEFDRVLFALTGPERRIVVRRLG
RLNFFDPRRADGDYDLDLSVWEDRVLASILAQL
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mRNA from alignment at M-pyrifera_M_contig68733:67..315-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68733.16524.1 ID=mRNA_M-pyrifera_M_contig68733.16524.1|Name=mRNA_M-pyrifera_M_contig68733.16524.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig68733:67..315- (Macrocystis pyrifera P11B4 male)
CTTGTGCGTCTGATCCCTCTCAACTGCCCTGGTCTTCGAGTCGAGCTTGT GGTTGCTCTTTTTCCTAAGATCGTTGATCTCCCAGAATTCGACCGCGTGC TCTTTGCTCTTACAGGTCCAGAGCGTCGTATTGTTGTACGGCGTCTTGGC CGCTTGAACTTCTTCGACCCCAGACGAGCTGACGGAGACTATGACCTTGA TTTGAGTGTTTGGGAAGACCGTGTTCTTGCATCCATCTTGGCACAACTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68733:67..315-

>mRNA_M-pyrifera_M_contig68733.16524.1 ID=mRNA_M-pyrifera_M_contig68733.16524.1|Name=mRNA_M-pyrifera_M_contig68733.16524.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig68733:67..315- (Macrocystis pyrifera P11B4 male)
CTTGTGCGTCTGATCCCTCTCAACTGCCCTGGTCTTCGAGTCGAGCTTGT
GGTTGCTCTTTTTCCTAAGATCGTTGATCTCCCAGAATTCGACCGCGTGC
TCTTTGCTCTTACAGGTCCAGAGCGTCGTATTGTTGTACGGCGTCTTGGC
CGCTTGAACTTCTTCGACCCCAGACGAGCTGACGGAGACTATGACCTTGA
TTTGAGTGTTTGGGAAGACCGTGTTCTTGCATCCATCTTGGCACAACTTC
TTGTGCGTCTGATCCCTCTCAACTGCCCTGGTCTTCGAGTCGAGCTTGTG
GTTGCTCTTTTTCCTAAGATCGTTGATCTCCCAGAATTCGACCGCGTGCT
CTTTGCTCTTACAGGTCCAGAGCGTCGTATTGTTGTACGGCGTCTTGGCC
GCTTGAACTTCTTCGACCCCAGACGAGCTGACGGAGACTATGACCTTGAT
TTGAGTGTTTGGGAAGACCGTGTTCTTGCATCCATCTTGGCACAACTT
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