mRNA_M-pyrifera_M_contig68705.16523.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68705.16523.1
Unique NamemRNA_M-pyrifera_M_contig68705.16523.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68705.16523.1 vs. uniprot
Match: UPI00148895A7 (hypothetical protein n=1 Tax=Alienimonas chondri TaxID=2681879 RepID=UPI00148895A7)

HSP 1 Score: 76.3 bits (186), Expect = 2.100e-12
Identity = 54/170 (31.76%), Postives = 93/170 (54.71%), Query Frame = 1 
Query:  154 GTSITDVGLGELARASALSNLDLYANPYVTDAGLAKLVDLEELSVLILSDLPITGSGISNFSHLSALRVYDCE--NLSNSAIPEICRLPKLAVLDLSDSRVTDEAMTLVDFTSTVEQLHLGSTRITNTSLPVIAERFPNLQNLTLDKLPGITDEGAPYLARMKKLKQLSI 657
            GTS  D  +G + + ++L  LD+   P V++ GLAKL  L  L VL L  + +  + +S    +  +R  D    N+ ++A+  + +LPKLA L L  S VTD+ ++ +     ++ L L +    + +  +IAE+FP+L++L LD+      EG   L R+ +L+ LS+
Sbjct:  137 GTSFDDAAMGVVGQLTSLERLDISGTP-VSNDGLAKLSGLTNLKVLRLKTVSV--NDLSPVEGMQDMRELDLRFSNVGDAAMDSVAKLPKLATLKLERSAVTDDGLSKLSADQPIKALDLDTGF--SEAPAIIAEKFPDLRSLELDRSDVYGAEGFAPLGRLTELRTLSL 301
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68705.16523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00148895A72.100e-1231.76hypothetical protein n=1 Tax=Alienimonas chondri T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68705contigM-pyrifera_M_contig68705:7..705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size699
Cds size699
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.3355923-CDS-M-pyrifera_M_contig68705:6..7051622816579.3355923-CDS-M-pyrifera_M_contig68705:6..705Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68705 7..705 -
1692278058.0114863-CDS-M-pyrifera_M_contig68705:6..7051692278058.0114863-CDS-M-pyrifera_M_contig68705:6..705Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68705 7..705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68705.16523.1prot_M-pyrifera_M_contig68705.16523.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68705 7..705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68705.16523.1

>prot_M-pyrifera_M_contig68705.16523.1 ID=prot_M-pyrifera_M_contig68705.16523.1|Name=mRNA_M-pyrifera_M_contig68705.16523.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=233bp
AEFITRFIKVDHSRLSTDSDVTFVGVELPAIDDDFMSVMSRFDNLSGAKF
SGTSITDVGLGELARASALSNLDLYANPYVTDAGLAKLVDLEELSVLILS
DLPITGSGISNFSHLSALRVYDCENLSNSAIPEICRLPKLAVLDLSDSRV
TDEAMTLVDFTSTVEQLHLGSTRITNTSLPVIAERFPNLQNLTLDKLPGI
TDEGAPYLARMKKLKQLSIYGSGISEQAAASLQ
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mRNA from alignment at M-pyrifera_M_contig68705:7..705-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68705.16523.1 ID=mRNA_M-pyrifera_M_contig68705.16523.1|Name=mRNA_M-pyrifera_M_contig68705.16523.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=699bp|location=Sequence derived from alignment at M-pyrifera_M_contig68705:7..705- (Macrocystis pyrifera P11B4 male)
GCTGAATTCATAACGCGGTTCATCAAGGTTGATCATTCGCGACTTTCCAC
TGACAGCGATGTGACATTCGTTGGTGTCGAGTTGCCTGCAATTGATGACG
ACTTCATGAGTGTCATGAGTAGGTTCGACAACCTGAGTGGCGCTAAATTT
AGTGGCACCAGTATCACTGACGTAGGACTTGGAGAACTTGCACGTGCATC
GGCCTTGTCAAACCTTGACCTGTATGCCAACCCGTATGTTACCGATGCCG
GCTTGGCGAAGCTTGTAGATCTCGAGGAGCTTTCGGTTCTCATTCTGTCA
GATCTACCGATAACCGGCAGCGGTATCTCCAACTTTAGCCACTTGTCGGC
ACTGCGAGTGTACGATTGTGAAAACCTCAGTAACTCTGCGATCCCGGAAA
TTTGCCGCCTCCCCAAGCTGGCTGTTCTTGATCTCTCTGATTCGCGAGTA
ACAGATGAAGCGATGACACTTGTCGACTTCACATCGACAGTTGAACAACT
TCACTTAGGGTCGACGAGGATCACAAATACAAGTCTGCCTGTGATTGCGG
AACGGTTTCCAAACCTTCAGAACCTGACACTGGACAAGCTCCCGGGCATC
ACCGACGAGGGGGCTCCGTACCTCGCAAGAATGAAGAAGCTAAAACAGCT
TTCTATCTATGGTTCCGGCATATCCGAACAGGCTGCCGCCTCACTTCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68705:7..705-

>mRNA_M-pyrifera_M_contig68705.16523.1 ID=mRNA_M-pyrifera_M_contig68705.16523.1|Name=mRNA_M-pyrifera_M_contig68705.16523.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1398bp|location=Sequence derived from alignment at M-pyrifera_M_contig68705:7..705- (Macrocystis pyrifera P11B4 male)
GCTGAATTCATAACGCGGTTCATCAAGGTTGATCATTCGCGACTTTCCAC
TGACAGCGATGTGACATTCGTTGGTGTCGAGTTGCCTGCAATTGATGACG
ACTTCATGAGTGTCATGAGTAGGTTCGACAACCTGAGTGGCGCTAAATTT
AGTGGCACCAGTATCACTGACGTAGGACTTGGAGAACTTGCACGTGCATC
GGCCTTGTCAAACCTTGACCTGTATGCCAACCCGTATGTTACCGATGCCG
GCTTGGCGAAGCTTGTAGATCTCGAGGAGCTTTCGGTTCTCATTCTGTCA
GATCTACCGATAACCGGCAGCGGTATCTCCAACTTTAGCCACTTGTCGGC
ACTGCGAGTGTACGATTGTGAAAACCTCAGTAACTCTGCGATCCCGGAAA
TTTGCCGCCTCCCCAAGCTGGCTGTTCTTGATCTCTCTGATTCGCGAGTA
ACAGATGAAGCGATGACACTTGTCGACTTCACATCGACAGTTGAACAACT
TCACTTAGGGTCGACGAGGATCACAAATACAAGTCTGCCTGTGATTGCGG
AACGGTTTCCAAACCTTCAGAACCTGACACTGGACAAGCTCCCGGGCATC
ACCGACGAGGGGGCTCCGTACCTCGCAAGAATGAAGAAGCTAAAACAGCT
TTCTATCTATGGTTCCGGCATATCCGAACAGGCTGCCGCCTCACTTCAAG
CTGAATTCATAACGCGGTTCATCAAGGTTGATCATTCGCGACTTTCCACT
GACAGCGATGTGACATTCGTTGGTGTCGAGTTGCCTGCAATTGATGACGA
CTTCATGAGTGTCATGAGTAGGTTCGACAACCTGAGTGGCGCTAAATTTA
GTGGCACCAGTATCACTGACGTAGGACTTGGAGAACTTGCACGTGCATCG
GCCTTGTCAAACCTTGACCTGTATGCCAACCCGTATGTTACCGATGCCGG
CTTGGCGAAGCTTGTAGATCTCGAGGAGCTTTCGGTTCTCATTCTGTCAG
ATCTACCGATAACCGGCAGCGGTATCTCCAACTTTAGCCACTTGTCGGCA
CTGCGAGTGTACGATTGTGAAAACCTCAGTAACTCTGCGATCCCGGAAAT
TTGCCGCCTCCCCAAGCTGGCTGTTCTTGATCTCTCTGATTCGCGAGTAA
CAGATGAAGCGATGACACTTGTCGACTTCACATCGACAGTTGAACAACTT
CACTTAGGGTCGACGAGGATCACAAATACAAGTCTGCCTGTGATTGCGGA
ACGGTTTCCAAACCTTCAGAACCTGACACTGGACAAGCTCCCGGGCATCA
CCGACGAGGGGGCTCCGTACCTCGCAAGAATGAAGAAGCTAAAACAGCTT
TCTATCTATGGTTCCGGCATATCCGAACAGGCTGCCGCCTCACTTCAA
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