mRNA_M-pyrifera_M_contig687.16520.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig687.16520.1
Unique NamemRNA_M-pyrifera_M_contig687.16520.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig687.16520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig687contigM-pyrifera_M_contig687:2302..2745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig687.16520.1prot_M-pyrifera_M_contig687.16520.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig687 2345..2725 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.1849144-UTR-M-pyrifera_M_contig687:2301..23441622816579.1849144-UTR-M-pyrifera_M_contig687:2301..2344Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig687 2302..2344 +
1692278057.9439034-UTR-M-pyrifera_M_contig687:2301..23441692278057.9439034-UTR-M-pyrifera_M_contig687:2301..2344Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig687 2302..2344 +
1622816579.214695-UTR-M-pyrifera_M_contig687:2725..27451622816579.214695-UTR-M-pyrifera_M_contig687:2725..2745Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig687 2726..2745 +
1692278057.9612591-UTR-M-pyrifera_M_contig687:2725..27451692278057.9612591-UTR-M-pyrifera_M_contig687:2725..2745Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig687 2726..2745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.1986594-CDS-M-pyrifera_M_contig687:2344..27251622816579.1986594-CDS-M-pyrifera_M_contig687:2344..2725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig687 2345..2725 +
1692278057.952623-CDS-M-pyrifera_M_contig687:2344..27251692278057.952623-CDS-M-pyrifera_M_contig687:2344..2725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig687 2345..2725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig687.16520.1

>prot_M-pyrifera_M_contig687.16520.1 ID=prot_M-pyrifera_M_contig687.16520.1|Name=mRNA_M-pyrifera_M_contig687.16520.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
MFEGESKIAVGFACWESLVFCFLRALYSYSLLGERVIILFFVFQGGRDKQ
ESCASAWARDPRVVPLAMPFGARLIRCRGRVEGVWGRLRNLPVLGCALQV
LLAAALVKLLPRTRESIYINNSLLCG*
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mRNA from alignment at M-pyrifera_M_contig687:2302..2745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig687.16520.1 ID=mRNA_M-pyrifera_M_contig687.16520.1|Name=mRNA_M-pyrifera_M_contig687.16520.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig687:2302..2745+ (Macrocystis pyrifera P11B4 male)
TTTCGCTTCTGCTCCGAGCGTTGTTGAGTTTGGCGTGCCCCAAATGTTTG
AAGGTGAAAGCAAAATCGCGGTAGGTTTTGCTTGCTGGGAGAGTCTCGTA
TTTTGTTTTCTACGAGCATTGTACTCGTATTCACTACTCGGCGAACGCGT
GATCATCCTTTTTTTTGTGTTTCAGGGTGGTAGAGACAAGCAGGAATCGT
GCGCGTCTGCCTGGGCCAGAGATCCGCGAGTGGTCCCCTTGGCTATGCCG
TTTGGTGCCAGGTTAATAAGGTGCCGAGGAAGAGTGGAAGGCGTGTGGGG
TCGTCTGAGAAACCTTCCCGTTCTGGGATGTGCGCTTCAAGTTCTTCTGG
CTGCTGCATTGGTCAAGCTGCTCCCTAGGACTCGAGAAAGTATATATATA
AATAACAGCCTCCTCTGTGGATGAAGGCGCCCTATAACCTCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig687:2302..2745+

>mRNA_M-pyrifera_M_contig687.16520.1 ID=mRNA_M-pyrifera_M_contig687.16520.1|Name=mRNA_M-pyrifera_M_contig687.16520.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig687:2302..2745+ (Macrocystis pyrifera P11B4 male)
ATGTTTGAAGGTGAAAGCAAAATCGCGGTAGGTTTTGCTTGCTGGGAGAG
TCTCGTATTTTGTTTTCTACGAGCATTGTACTCGTATTCACTACTCGGCG
AACGCGTGATCATCCTTTTTTTTGTGTTTCAGGGTGGTAGAGACAAGCAG
GAATCGTGCGCGTCTGCCTGGGCCAGAGATCCGCGAGTGGTCCCCTTGGC
TATGCCGTTTGGTGCCAGGTTAATAAGGTGCCGAGGAAGAGTGGAAGGCG
TGTGGGGTCGTCTGAGAAACCTTCCCGTTCTGGGATGTGCGCTTCAAGTT
CTTCTGGCTGCTGCATTGGTCAAGCTGCTCCCTAGGACTCGAGAAAGTAT
ATATATAAATAACAGCCTCCTCTGTGGATGAATGTTTGAAGGTGAAAGCA
AAATCGCGGTAGGTTTTGCTTGCTGGGAGAGTCTCGTATTTTGTTTTCTA
CGAGCATTGTACTCGTATTCACTACTCGGCGAACGCGTGATCATCCTTTT
TTTTGTGTTTCAGGGTGGTAGAGACAAGCAGGAATCGTGCGCGTCTGCCT
GGGCCAGAGATCCGCGAGTGGTCCCCTTGGCTATGCCGTTTGGTGCCAGG
TTAATAAGGTGCCGAGGAAGAGTGGAAGGCGTGTGGGGTCGTCTGAGAAA
CCTTCCCGTTCTGGGATGTGCGCTTCAAGTTCTTCTGGCTGCTGCATTGG
TCAAGCTGCTCCCTAGGACTCGAGAAAGTATATATATAAATAACAGCCTC
CTCTGTGGATGA
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