mRNA_M-pyrifera_M_contig68587.16503.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68587.16503.1
Unique NamemRNA_M-pyrifera_M_contig68587.16503.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68587.16503.1 vs. uniprot
Match: A0A1G2ZP60_9BACT (FtsX domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_13_63_9 TaxID=1801965 RepID=A0A1G2ZP60_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 3.570e-6
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:   10 MNIFKLLLDEIRYRKINFVLMLIGVTVAVSLFVAGAAVVNGYHSESIEHYEVMQQETADALAEVEDE 210
            MNI KLLL EI YRK++F+  L+ +T+AV+LFV G  +V+GY  E+      ++ ETA  L  + DE
Sbjct:    1 MNILKLLLAEIAYRKLSFLFSLMAITIAVTLFVVGPVLVDGYARETESQVAKLEAETAATLDRLSDE 67
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BLAST of mRNA_M-pyrifera_M_contig68587.16503.1 vs. uniprot
Match: A0A1G3ANS4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium RBG_16_64_12 TaxID=1801971 RepID=A0A1G3ANS4_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 3.580e-6
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   10 MNIFKLLLDEIRYRKINFVLMLIGVTVAVSLFVAGAAVVNGYHSES 147
            M+ FKLLL EI YRK+NFVL L  +T+AV+LFVAG  +V+GY  E+
Sbjct:    1 MSTFKLLLAEICYRKVNFVLSLFAITIAVTLFVAGPVLVDGYGRET 46
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BLAST of mRNA_M-pyrifera_M_contig68587.16503.1 vs. uniprot
Match: A0A7C7VHV8_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7VHV8_9PLAN)

HSP 1 Score: 49.7 bits (117), Expect = 1.710e-5
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   10 MNIFKLLLDEIRYRKINFVLMLIGVTVAVSLFVAGAAVVNGYHSES 147
            M +FKLL+ EI YRK+NFVL L+ VTVA +LFVAG  +V+GY  ++
Sbjct:    1 MAMFKLLVAEILYRKLNFVLSLLAVTVAATLFVAGPLLVDGYSHQT 46
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68587.16503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1G2ZP60_9BACT3.570e-646.27FtsX domain-containing protein n=1 Tax=Planctomyce... [more]
A0A1G3ANS4_9BACT3.580e-660.87Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C7VHV8_9PLAN1.710e-558.70Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68587contigM-pyrifera_M_contig68587:1022..1231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size210
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816578.0944817-UTR-M-pyrifera_M_contig68587:1021..10301622816578.0944817-UTR-M-pyrifera_M_contig68587:1021..1030Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68587 1022..1030 +
1692278057.518216-UTR-M-pyrifera_M_contig68587:1021..10301692278057.518216-UTR-M-pyrifera_M_contig68587:1021..1030Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig68587 1022..1030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816578.1086578-CDS-M-pyrifera_M_contig68587:1030..12311622816578.1086578-CDS-M-pyrifera_M_contig68587:1030..1231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68587 1031..1231 +
1692278057.5291462-CDS-M-pyrifera_M_contig68587:1030..12311692278057.5291462-CDS-M-pyrifera_M_contig68587:1030..1231Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68587 1031..1231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68587.16503.1prot_M-pyrifera_M_contig68587.16503.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68587 1031..1231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68587.16503.1

>prot_M-pyrifera_M_contig68587.16503.1 ID=prot_M-pyrifera_M_contig68587.16503.1|Name=mRNA_M-pyrifera_M_contig68587.16503.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MNIFKLLLDEIRYRKINFVLMLIGVTVAVSLFVAGAAVVNGYHSESIEHY
EVMQQETADALAEVEDE
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mRNA from alignment at M-pyrifera_M_contig68587:1022..1231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68587.16503.1 ID=mRNA_M-pyrifera_M_contig68587.16503.1|Name=mRNA_M-pyrifera_M_contig68587.16503.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig68587:1022..1231+ (Macrocystis pyrifera P11B4 male)
GAGACCAAGATGAACATCTTCAAGCTACTGCTTGACGAAATTCGGTACCG
CAAAATCAATTTCGTGTTGATGCTGATCGGAGTCACGGTCGCAGTCAGCC
TGTTTGTGGCGGGGGCCGCCGTCGTGAATGGGTATCACTCTGAGAGCATC
GAGCACTATGAGGTGATGCAACAAGAAACAGCAGATGCCCTGGCCGAAGT
GGAGGACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68587:1022..1231+

>mRNA_M-pyrifera_M_contig68587.16503.1 ID=mRNA_M-pyrifera_M_contig68587.16503.1|Name=mRNA_M-pyrifera_M_contig68587.16503.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig68587:1022..1231+ (Macrocystis pyrifera P11B4 male)
ATGAACATCTTCAAGCTACTGCTTGACGAAATTCGGTACCGCAAAATCAA
TTTCGTGTTGATGCTGATCGGAGTCACGGTCGCAGTCAGCCTGTTTGTGG
CGGGGGCCGCCGTCGTGAATGGGTATCACTCTGAGAGCATCGAGCACTAT
GAGGTGATGCAACAAGAAACAGCAGATGCCCTGGCCGAAGTGGAGGACGA
GATGAACATCTTCAAGCTACTGCTTGACGAAATTCGGTACCGCAAAATCA
ATTTCGTGTTGATGCTGATCGGAGTCACGGTCGCAGTCAGCCTGTTTGTG
GCGGGGGCCGCCGTCGTGAATGGGTATCACTCTGAGAGCATCGAGCACTA
TGAGGTGATGCAACAAGAAACAGCAGATGCCCTGGCCGAAGTGGAGGACG
AG
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