mRNA_M-pyrifera_M_contig68575.16496.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig68575.16496.1
Unique NamemRNA_M-pyrifera_M_contig68575.16496.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig68575.16496.1 vs. uniprot
Match: A0A7Y4SVD4_9BACT (Carboxypeptidase regulatory-like domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4SVD4_9BACT)

HSP 1 Score: 248 bits (633), Expect = 3.790e-74
Identity = 137/344 (39.83%), Postives = 195/344 (56.69%), Query Frame = 1 
Query:    4 EIEKQGFASLREEVAVTASFTTPIDRLKYRLQPGSSLQVLVEGNVGGPGPAEIWL-------SPGVSNRLSNFPYWKLNPVRAIPGQLTTIRDLPSELIRVQVFRPGARAVPESRNVNLRGTQTQSLTVQLQSTPKVTGVVRQDGVPVPGATVRLEAPDQVQAALRHYRQPVQFLESGYHALPPNARQVTTTDERGRFVLNQWTDDTPARYLAAEAPDGTAAALRLIGRDDTDVSLDLEPHAEARGVLTIETNGRFQGLPVEWRVNGAPRADFTADPGEPLTFTGLREGIWRVRATWHAQEVV--DERKVEVTAGGTELQVELPQDAIVGQDREAWTRAGREYP 1008
            E+E +G+A  +E V V        +R+ + L+P   L+V ++GNVGGPGPA++++       +   + +   FP+ ++NP+   PG   TI +L  E++R+ VFR GA A  ++ N+   G     + + LQ  P +TG+V+QDG PV GATVRLEAPD+V+A L ++ +P  FLE+      P   Q T TD++GRFVL  W + +P RYL A  P G + A R +  DD ++ L+L   +     L +E  GR QGLPVE  + GAPR       GE L  + L  G WRV  TWHAQ +   +E  +E  A     +V LP + I GQ  E W RAGREYP
Sbjct:  231 EVEHEGYALYQELVWVAGGAANSAERMTFTLKPAVELRVAIQGNVGGPGPAQLFVLSDRPQYNANSAFKNEGFPWHRINPIEVWPGTPVTIANLRPEVVRLHVFRAGACAPVKAVNL---GANQHDVVIDLQPAPTLTGIVQQDGAPVLGATVRLEAPDRVRATLNYFSEPSYFLETAVMPNLPPGLQETKTDKQGRFVLTAWAEASPVRYLEARGPGGGSWAGRFVKPDDNEIVLELGEVSLGDSTLLVEFPGRHQGLPVELWIGGAPRPQQILAAGEDLEVSNLVAGKWRVTVTWHAQPIKPGEELLIEDVA---RYEVALPPECIDGQSEEQWKRAGREYP 568
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BLAST of mRNA_M-pyrifera_M_contig68575.16496.1 vs. uniprot
Match: A0A7C2B788_9BACT (Carboxypeptidase regulatory-like domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2B788_9BACT)

HSP 1 Score: 251 bits (641), Expect = 5.490e-74
Identity = 145/345 (42.03%), Postives = 199/345 (57.68%), Query Frame = 1 
Query:    1 IEIEKQGFASLREEVAVTASFTTPIDRLKYRLQPGSSLQVLVEGNVGGPGPAEIWLSPG--------VSNRLSNFPYWKLNPVRAIPGQLTTIRDLPSELIRVQVFRPGARAVPESRNVNLRGTQTQSLTVQLQSTPKVTGVVRQDGVPVPGATVRLEAPDQVQAALRHYRQPVQFLESGYHALPPNARQVTTTDERGRFVLNQWTDDTPARYLAAEAPDGTAAALRLIGRDDTDVSLDLEPHAEARGVLTIETNGRFQGLPVEWRVNGAPRADFTADPGEPLTFTGLREGIWRVRATWHAQEVVDERKVEVTAGGTELQ-VELPQDAIVGQDREAWTRAGREYP 1008
            +EIE   +A+ +E V V ++   P   L + L+ G+SL++ +  +VGGPGP E+ L PG         S R S FP+ +LNP+   PG    I  LP E+++V  FRPGA+A  +   VNLRG +   L ++++    ++G V +DGVPVPGA+V LEAPD V+A L   RQ   +LE+    + P ARQ   TDE+GR+ L  W + TP RYL A  P GT  A RL+ R D +V L+LE      G+++ +  GR+QGLPVE  V+GAP   +   P E L    L EG W  R +WH + + D   VE++      + VELP   I GQD EAW RAGR YP
Sbjct:  378 VEIEHPDYAAYQELVWVASAQVAPRTELSFTLREGASLRIAIGNDVGGPGPVEVVLLPGNAGHRPPQASYRNSRFPFHRLNPIEVWPGTPKEITGLPVEVVQVFAFRPGAKA--KQAVVNLRGGRPYDLKLRMKPAATISGKVLRDGVPVPGASVTLEAPDMVRATLSFLRQGSLYLETADMPVFPMARQEVFTDEQGRYRLTAWEEITPTRYLEARGPGGTGWAGRLVHRGDHEVDLELERAEFGGGLVSFDFPGRWQGLPVEVFVDGAPLEPWILPPHEDLVVRDLLEGRWHARLSWHGEPIDD---VELSLRPEAYRRVELPAACIDGQDEEAWKRAGRSYP 717
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BLAST of mRNA_M-pyrifera_M_contig68575.16496.1 vs. uniprot
Match: A0A2D5AXK2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AXK2_9BACT)

HSP 1 Score: 221 bits (562), Expect = 1.340e-63
Identity = 131/346 (37.86%), Postives = 186/346 (53.76%), Query Frame = 1 
Query:    4 EIEKQGFASLREEVAVTASFTTPI-DRLKYRLQPGSSLQVLVEGNVGGPGPAEIWLSPGVSN---------RLSNFPYWKLNPVRAIPGQLTTIRDLP-SELIRVQVFRPGARAVPESRNVNLRGTQTQSLTVQLQSTPKVTGVVRQDGVPVPGATVRLEAPDQVQAALRHYRQPVQFLESGYHALPPNARQVTTTDERGRFVLNQWTDDTPARYLAAEAPDGTAAALRLIGRDDTDVSLDLEPHAEARGVLTIETNGRFQGLPVEWRVNGAPRADFTADPGEPLTFTGLREGIWRVRATWHAQEVVDERKVEVTAGGTELQVELPQDAIVGQDREAWTRAGREYP 1008
            EIEK+G+AS +E V V A  T    +RL + L    SL+V + GNVGGPGPA++ + PG            R S FP+   NP+   PG+   I  LP ++++++  FR GA A  +  N++ R  + Q   + L+  PK+ G V  DG PV GA VRLEA D+ +A L  +R+   +LE+      P A Q T T   GRF L+ W D++  RY+ A   DG   A R I        L L         L +   GR+QGLPV+  +NGAPR      P E L    +  G+WR+R TWH + V    ++E++   + + V+LP++ I GQD E+W RAGRE+P
Sbjct:  238 EIEKEGYASYQELVWVQAGVTNANRERLVFTLDKEVSLEVALRGNVGGPGPAQLIVLPGQHGYRSTADSAYRNSRFPFHTKNPIEVWPGRPVRIDGLPPNQVVKLYTFRQGAEAKLKVVNLSAREQRVQ---IDLEPAPKIVGQVTLDGEPVSGAHVRLEAADRPRATLSFFREASYYLETAIIPDIPPAVQETQTGANGRFFLSAWPDESAVRYIEARGKDGKTWAGRFIRAGTEVCDLQLSEVDTGDAALKLAFPGRYQGLPVDLVLNGAPRDLAVLKPSESLEIHDIPSGVWRLRITWHGEPVYKNEELEISGSDSRV-VKLPEECIEGQDEESWRRAGREFP 579
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig68575.16496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7Y4SVD4_9BACT3.790e-7439.83Carboxypeptidase regulatory-like domain-containing... [more]
A0A7C2B788_9BACT5.490e-7442.03Carboxypeptidase regulatory-like domain-containing... [more]
A0A2D5AXK2_9BACT1.340e-6337.86Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig68575contigM-pyrifera_M_contig68575:212..1225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1014
Cds size1014
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.8123608-CDS-M-pyrifera_M_contig68575:211..12251622816577.8123608-CDS-M-pyrifera_M_contig68575:211..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68575 212..1225 -
1692278057.3736126-CDS-M-pyrifera_M_contig68575:211..12251692278057.3736126-CDS-M-pyrifera_M_contig68575:211..1225Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig68575 212..1225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig68575.16496.1prot_M-pyrifera_M_contig68575.16496.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig68575 212..1225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig68575.16496.1

>prot_M-pyrifera_M_contig68575.16496.1 ID=prot_M-pyrifera_M_contig68575.16496.1|Name=mRNA_M-pyrifera_M_contig68575.16496.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=338bp
IEIEKQGFASLREEVAVTASFTTPIDRLKYRLQPGSSLQVLVEGNVGGPG
PAEIWLSPGVSNRLSNFPYWKLNPVRAIPGQLTTIRDLPSELIRVQVFRP
GARAVPESRNVNLRGTQTQSLTVQLQSTPKVTGVVRQDGVPVPGATVRLE
APDQVQAALRHYRQPVQFLESGYHALPPNARQVTTTDERGRFVLNQWTDD
TPARYLAAEAPDGTAAALRLIGRDDTDVSLDLEPHAEARGVLTIETNGRF
QGLPVEWRVNGAPRADFTADPGEPLTFTGLREGIWRVRATWHAQEVVDER
KVEVTAGGTELQVELPQDAIVGQDREAWTRAGREYPF*
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mRNA from alignment at M-pyrifera_M_contig68575:212..1225-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig68575.16496.1 ID=mRNA_M-pyrifera_M_contig68575.16496.1|Name=mRNA_M-pyrifera_M_contig68575.16496.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig68575:212..1225- (Macrocystis pyrifera P11B4 male)
ATCGAGATCGAGAAGCAGGGCTTTGCGAGCCTGCGCGAGGAGGTCGCGGT
GACCGCGTCCTTCACGACGCCGATCGACCGCTTGAAGTACCGCCTGCAGC
CGGGCTCGAGCCTGCAGGTCCTGGTCGAGGGCAACGTCGGCGGGCCGGGG
CCGGCCGAGATCTGGCTGAGCCCGGGCGTGTCGAACCGGCTGAGCAACTT
CCCGTACTGGAAGCTCAACCCCGTGCGCGCGATCCCCGGCCAACTGACGA
CCATCCGCGACCTGCCGAGCGAGCTGATCCGGGTGCAGGTCTTCCGTCCC
GGCGCACGCGCCGTGCCCGAGTCGCGCAACGTCAACCTGCGCGGCACCCA
GACCCAGAGCCTGACCGTGCAGCTCCAGAGCACGCCCAAGGTCACCGGCG
TCGTGCGCCAGGACGGCGTGCCGGTGCCGGGTGCGACCGTGCGCCTCGAG
GCGCCGGACCAGGTCCAGGCCGCGCTGCGCCACTACCGCCAGCCGGTGCA
GTTCCTCGAGTCGGGTTACCACGCGCTGCCGCCGAACGCGCGCCAGGTGA
CGACGACCGACGAGCGCGGGCGCTTCGTGTTGAACCAATGGACCGACGAC
ACGCCGGCGCGCTACCTGGCGGCCGAGGCGCCCGATGGGACCGCCGCCGC
GCTGCGCCTGATCGGCCGCGACGACACCGACGTGAGCCTGGACCTCGAGC
CGCACGCCGAGGCCCGCGGCGTGCTGACCATCGAGACCAACGGGCGCTTC
CAGGGGCTGCCGGTCGAGTGGCGCGTGAACGGGGCGCCGCGGGCGGACTT
CACGGCGGATCCGGGCGAGCCGCTGACCTTCACCGGCCTGCGCGAGGGCA
TCTGGCGCGTGCGCGCGACGTGGCACGCGCAAGAGGTCGTGGACGAGCGC
AAGGTCGAGGTGACCGCCGGCGGCACCGAGCTCCAGGTCGAGCTGCCCCA
GGACGCGATCGTGGGCCAGGACCGCGAGGCCTGGACCCGGGCGGGGCGCG
AGTACCCGTTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig68575:212..1225-

>mRNA_M-pyrifera_M_contig68575.16496.1 ID=mRNA_M-pyrifera_M_contig68575.16496.1|Name=mRNA_M-pyrifera_M_contig68575.16496.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2028bp|location=Sequence derived from alignment at M-pyrifera_M_contig68575:212..1225- (Macrocystis pyrifera P11B4 male)
ATCGAGATCGAGAAGCAGGGCTTTGCGAGCCTGCGCGAGGAGGTCGCGGT
GACCGCGTCCTTCACGACGCCGATCGACCGCTTGAAGTACCGCCTGCAGC
CGGGCTCGAGCCTGCAGGTCCTGGTCGAGGGCAACGTCGGCGGGCCGGGG
CCGGCCGAGATCTGGCTGAGCCCGGGCGTGTCGAACCGGCTGAGCAACTT
CCCGTACTGGAAGCTCAACCCCGTGCGCGCGATCCCCGGCCAACTGACGA
CCATCCGCGACCTGCCGAGCGAGCTGATCCGGGTGCAGGTCTTCCGTCCC
GGCGCACGCGCCGTGCCCGAGTCGCGCAACGTCAACCTGCGCGGCACCCA
GACCCAGAGCCTGACCGTGCAGCTCCAGAGCACGCCCAAGGTCACCGGCG
TCGTGCGCCAGGACGGCGTGCCGGTGCCGGGTGCGACCGTGCGCCTCGAG
GCGCCGGACCAGGTCCAGGCCGCGCTGCGCCACTACCGCCAGCCGGTGCA
GTTCCTCGAGTCGGGTTACCACGCGCTGCCGCCGAACGCGCGCCAGGTGA
CGACGACCGACGAGCGCGGGCGCTTCGTGTTGAACCAATGGACCGACGAC
ACGCCGGCGCGCTACCTGGCGGCCGAGGCGCCCGATGGGACCGCCGCCGC
GCTGCGCCTGATCGGCCGCGACGACACCGACGTGAGCCTGGACCTCGAGC
CGCACGCCGAGGCCCGCGGCGTGCTGACCATCGAGACCAACGGGCGCTTC
CAGGGGCTGCCGGTCGAGTGGCGCGTGAACGGGGCGCCGCGGGCGGACTT
CACGGCGGATCCGGGCGAGCCGCTGACCTTCACCGGCCTGCGCGAGGGCA
TCTGGCGCGTGCGCGCGACGTGGCACGCGCAAGAGGTCGTGGACGAGCGC
AAGGTCGAGGTGACCGCCGGCGGCACCGAGCTCCAGGTCGAGCTGCCCCA
GGACGCGATCGTGGGCCAGGACCGCGAGGCCTGGACCCGGGCGGGGCGCG
AGTACCCGTTCTGAATCGAGATCGAGAAGCAGGGCTTTGCGAGCCTGCGC
GAGGAGGTCGCGGTGACCGCGTCCTTCACGACGCCGATCGACCGCTTGAA
GTACCGCCTGCAGCCGGGCTCGAGCCTGCAGGTCCTGGTCGAGGGCAACG
TCGGCGGGCCGGGGCCGGCCGAGATCTGGCTGAGCCCGGGCGTGTCGAAC
CGGCTGAGCAACTTCCCGTACTGGAAGCTCAACCCCGTGCGCGCGATCCC
CGGCCAACTGACGACCATCCGCGACCTGCCGAGCGAGCTGATCCGGGTGC
AGGTCTTCCGTCCCGGCGCACGCGCCGTGCCCGAGTCGCGCAACGTCAAC
CTGCGCGGCACCCAGACCCAGAGCCTGACCGTGCAGCTCCAGAGCACGCC
CAAGGTCACCGGCGTCGTGCGCCAGGACGGCGTGCCGGTGCCGGGTGCGA
CCGTGCGCCTCGAGGCGCCGGACCAGGTCCAGGCCGCGCTGCGCCACTAC
CGCCAGCCGGTGCAGTTCCTCGAGTCGGGTTACCACGCGCTGCCGCCGAA
CGCGCGCCAGGTGACGACGACCGACGAGCGCGGGCGCTTCGTGTTGAACC
AATGGACCGACGACACGCCGGCGCGCTACCTGGCGGCCGAGGCGCCCGAT
GGGACCGCCGCCGCGCTGCGCCTGATCGGCCGCGACGACACCGACGTGAG
CCTGGACCTCGAGCCGCACGCCGAGGCCCGCGGCGTGCTGACCATCGAGA
CCAACGGGCGCTTCCAGGGGCTGCCGGTCGAGTGGCGCGTGAACGGGGCG
CCGCGGGCGGACTTCACGGCGGATCCGGGCGAGCCGCTGACCTTCACCGG
CCTGCGCGAGGGCATCTGGCGCGTGCGCGCGACGTGGCACGCGCAAGAGG
TCGTGGACGAGCGCAAGGTCGAGGTGACCGCCGGCGGCACCGAGCTCCAG
GTCGAGCTGCCCCAGGACGCGATCGTGGGCCAGGACCGCGAGGCCTGGAC
CCGGGCGGGGCGCGAGTACCCGTTCTGA
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